HEADER HYDROLASE/TOXIN 21-JAN-02 1KU6 TITLE FASCICULIN 2-MOUSE ACETYLCHOLINESTERASE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLCHOLINESTERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACHE; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FASCICULIN 2; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: FAS-II SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 ORGAN: BRAIN; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 10 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: LAMBDA-ZAP AND LAMBDA-FIX CDNA; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: DENDROASPIS ANGUSTICEPS; SOURCE 14 ORGANISM_COMMON: EASTERN GREEN MAMBA; SOURCE 15 ORGANISM_TAXID: 8618; SOURCE 16 SECRETION: VENOM KEYWDS HYDROLASE, SERINE ESTERASE, SYNAPSE, VENOM, TOXIN, HYDROLASE-TOXIN KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.BOURNE,W.BURMEISTER,P.TAYLOR,P.MARCHOT REVDAT 5 29-JUL-20 1KU6 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 13-JUL-11 1KU6 1 VERSN REVDAT 3 24-FEB-09 1KU6 1 VERSN REVDAT 2 05-APR-05 1KU6 1 JRNL REVDAT 1 23-DEC-03 1KU6 0 JRNL AUTH Y.BOURNE,P.TAYLOR,Z.RADIC,P.MARCHOT JRNL TITL STRUCTURAL INSIGHTS INTO LIGAND INTERACTIONS AT THE JRNL TITL 2 ACETYLCHOLINESTERASE PERIPHERAL ANIONIC SITE. JRNL REF EMBO J. V. 22 1 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 12505979 JRNL DOI 10.1093/EMBOJ/CDG005 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3747291.810 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.4 REMARK 3 NUMBER OF REFLECTIONS : 27361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.900 REMARK 3 FREE R VALUE TEST SET COUNT : 803 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 51.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2617 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 77 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.041 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4616 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 19.95000 REMARK 3 B22 (A**2) : 19.95000 REMARK 3 B33 (A**2) : -39.90000 REMARK 3 B12 (A**2) : 4.30000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.43 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.46 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.350 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.300 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.220 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.880 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.850 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.28 REMARK 3 BSOL : 37.60 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : EDO.PAR REMARK 3 PARAMETER FILE 4 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : EDO.TOP REMARK 3 TOPOLOGY FILE 4 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KU6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1000015349. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.947 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : FILM REMARK 200 DETECTOR MANUFACTURER : LARGE IMAGE PLATE SCANNER REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27485 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.5 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 2K, 50 MM NAAC, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 365.74667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 182.87333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 274.31000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 91.43667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 457.18333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 365.74667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 182.87333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 91.43667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 274.31000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 457.18333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS THE COMPLEX GENERATED FROM REMARK 300 CHAINS A & B REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 36.90000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 63.91267 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 91.43667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 GLY A 2 REMARK 465 PRO A 259 REMARK 465 GLY A 260 REMARK 465 GLY A 261 REMARK 465 ALA A 262 REMARK 465 ALA A 542 REMARK 465 THR A 543 REMARK 465 ASP A 544 REMARK 465 THR A 545 REMARK 465 LEU A 546 REMARK 465 ASP A 547 REMARK 465 GLU A 548 REMARK 465 ALA A 549 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 3 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 493 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 496 CG CD CE NZ REMARK 470 LYS B 51 CG CD CE NZ REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 PRO A 492 REMARK 475 ARG A 493 REMARK 475 ASP A 494 REMARK 475 SER A 495 REMARK 475 LYS A 496 REMARK 475 SER A 497 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 732 O HOH A 732 8675 1.82 REMARK 500 O HOH A 738 O HOH A 738 10665 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 446 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 ASN A 490 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 -157.15 -78.27 REMARK 500 PHE A 47 -7.23 78.43 REMARK 500 PRO A 106 -173.48 -64.88 REMARK 500 PRO A 111 106.27 -40.83 REMARK 500 PRO A 162 129.57 -36.43 REMARK 500 ALA A 167 56.42 -160.56 REMARK 500 GLN A 184 -73.63 -62.97 REMARK 500 SER A 203 -123.05 49.45 REMARK 500 SER A 293 -178.82 -170.03 REMARK 500 ASP A 306 -71.26 -116.64 REMARK 500 ASP A 333 65.38 -114.60 REMARK 500 SER A 336 -74.58 -34.66 REMARK 500 HIS A 387 72.98 -119.85 REMARK 500 VAL A 407 -58.23 -127.16 REMARK 500 ALA A 420 1.26 -64.51 REMARK 500 ASN A 490 -88.16 -85.40 REMARK 500 ASP A 491 119.40 -178.92 REMARK 500 PRO A 492 23.03 -70.57 REMARK 500 ARG A 493 -100.44 -172.05 REMARK 500 ASP A 494 100.10 -35.76 REMARK 500 SER A 495 84.86 -54.91 REMARK 500 ARG A 525 44.51 35.53 REMARK 500 HIS B 6 163.97 176.82 REMARK 500 THR B 7 -168.42 -113.20 REMARK 500 GLU B 19 76.36 -112.69 REMARK 500 ASP B 46 -21.23 66.89 REMARK 500 SER B 55 160.17 176.86 REMARK 500 ASP B 57 147.06 -38.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 449 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MAH RELATED DB: PDB DBREF 1KU6 A 1 549 UNP P21836 ACES_MOUSE 32 580 DBREF 1KU6 B 1 61 UNP P01403 TXF7_DENAN 1 61 SEQADV 1KU6 ASN B 47 UNP P01403 TYR 47 SEE REMARK 999 SEQRES 1 A 549 GLU GLY ARG GLU ASP PRO GLN LEU LEU VAL ARG VAL ARG SEQRES 2 A 549 GLY GLY GLN LEU ARG GLY ILE ARG LEU LYS ALA PRO GLY SEQRES 3 A 549 GLY PRO VAL SER ALA PHE LEU GLY ILE PRO PHE ALA GLU SEQRES 4 A 549 PRO PRO VAL GLY SER ARG ARG PHE MET PRO PRO GLU PRO SEQRES 5 A 549 LYS ARG PRO TRP SER GLY VAL LEU ASP ALA THR THR PHE SEQRES 6 A 549 GLN ASN VAL CYS TYR GLN TYR VAL ASP THR LEU TYR PRO SEQRES 7 A 549 GLY PHE GLU GLY THR GLU MET TRP ASN PRO ASN ARG GLU SEQRES 8 A 549 LEU SER GLU ASP CYS LEU TYR LEU ASN VAL TRP THR PRO SEQRES 9 A 549 TYR PRO ARG PRO ALA SER PRO THR PRO VAL LEU ILE TRP SEQRES 10 A 549 ILE TYR GLY GLY GLY PHE TYR SER GLY ALA ALA SER LEU SEQRES 11 A 549 ASP VAL TYR ASP GLY ARG PHE LEU ALA GLN VAL GLU GLY SEQRES 12 A 549 ALA VAL LEU VAL SER MET ASN TYR ARG VAL GLY THR PHE SEQRES 13 A 549 GLY PHE LEU ALA LEU PRO GLY SER ARG GLU ALA PRO GLY SEQRES 14 A 549 ASN VAL GLY LEU LEU ASP GLN ARG LEU ALA LEU GLN TRP SEQRES 15 A 549 VAL GLN GLU ASN ILE ALA ALA PHE GLY GLY ASP PRO MET SEQRES 16 A 549 SER VAL THR LEU PHE GLY GLU SER ALA GLY ALA ALA SER SEQRES 17 A 549 VAL GLY MET HIS ILE LEU SER LEU PRO SER ARG SER LEU SEQRES 18 A 549 PHE HIS ARG ALA VAL LEU GLN SER GLY THR PRO ASN GLY SEQRES 19 A 549 PRO TRP ALA THR VAL SER ALA GLY GLU ALA ARG ARG ARG SEQRES 20 A 549 ALA THR LEU LEU ALA ARG LEU VAL GLY CYS PRO PRO GLY SEQRES 21 A 549 GLY ALA GLY GLY ASN ASP THR GLU LEU ILE ALA CYS LEU SEQRES 22 A 549 ARG THR ARG PRO ALA GLN ASP LEU VAL ASP HIS GLU TRP SEQRES 23 A 549 HIS VAL LEU PRO GLN GLU SER ILE PHE ARG PHE SER PHE SEQRES 24 A 549 VAL PRO VAL VAL ASP GLY ASP PHE LEU SER ASP THR PRO SEQRES 25 A 549 GLU ALA LEU ILE ASN THR GLY ASP PHE GLN ASP LEU GLN SEQRES 26 A 549 VAL LEU VAL GLY VAL VAL LYS ASP GLU GLY SER TYR PHE SEQRES 27 A 549 LEU VAL TYR GLY VAL PRO GLY PHE SER LYS ASP ASN GLU SEQRES 28 A 549 SER LEU ILE SER ARG ALA GLN PHE LEU ALA GLY VAL ARG SEQRES 29 A 549 ILE GLY VAL PRO GLN ALA SER ASP LEU ALA ALA GLU ALA SEQRES 30 A 549 VAL VAL LEU HIS TYR THR ASP TRP LEU HIS PRO GLU ASP SEQRES 31 A 549 PRO THR HIS LEU ARG ASP ALA MET SER ALA VAL VAL GLY SEQRES 32 A 549 ASP HIS ASN VAL VAL CYS PRO VAL ALA GLN LEU ALA GLY SEQRES 33 A 549 ARG LEU ALA ALA GLN GLY ALA ARG VAL TYR ALA TYR ILE SEQRES 34 A 549 PHE GLU HIS ARG ALA SER THR LEU THR TRP PRO LEU TRP SEQRES 35 A 549 MET GLY VAL PRO HIS GLY TYR GLU ILE GLU PHE ILE PHE SEQRES 36 A 549 GLY LEU PRO LEU ASP PRO SER LEU ASN TYR THR THR GLU SEQRES 37 A 549 GLU ARG ILE PHE ALA GLN ARG LEU MET LYS TYR TRP THR SEQRES 38 A 549 ASN PHE ALA ARG THR GLY ASP PRO ASN ASP PRO ARG ASP SEQRES 39 A 549 SER LYS SER PRO GLN TRP PRO PRO TYR THR THR ALA ALA SEQRES 40 A 549 GLN GLN TYR VAL SER LEU ASN LEU LYS PRO LEU GLU VAL SEQRES 41 A 549 ARG ARG GLY LEU ARG ALA GLN THR CYS ALA PHE TRP ASN SEQRES 42 A 549 ARG PHE LEU PRO LYS LEU LEU SER ALA THR ASP THR LEU SEQRES 43 A 549 ASP GLU ALA SEQRES 1 B 61 THR MET CYS TYR SER HIS THR THR THR SER ARG ALA ILE SEQRES 2 B 61 LEU THR ASN CYS GLY GLU ASN SER CYS TYR ARG LYS SER SEQRES 3 B 61 ARG ARG HIS PRO PRO LYS MET VAL LEU GLY ARG GLY CYS SEQRES 4 B 61 GLY CYS PRO PRO GLY ASP ASP ASN LEU GLU VAL LYS CYS SEQRES 5 B 61 CYS THR SER PRO ASP LYS CYS ASN TYR MODRES 1KU6 ASN A 350 ASN GLYCOSYLATION SITE HET NAG A1509 14 HET EDO A 701 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG C8 H15 N O6 FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *190(H2 O) HELIX 1 1 VAL A 42 ARG A 46 5 5 HELIX 2 2 PHE A 80 MET A 85 1 6 HELIX 3 3 LEU A 130 ASP A 134 5 5 HELIX 4 4 GLY A 135 GLY A 143 1 9 HELIX 5 5 VAL A 153 LEU A 159 1 7 HELIX 6 6 ASN A 170 ALA A 188 1 19 HELIX 7 7 SER A 203 SER A 215 1 13 HELIX 8 8 SER A 215 SER A 220 1 6 HELIX 9 9 ALA A 241 VAL A 255 1 15 HELIX 10 10 ASN A 265 ARG A 274 1 10 HELIX 11 11 PRO A 277 TRP A 286 1 10 HELIX 12 12 THR A 311 GLY A 319 1 9 HELIX 13 13 GLY A 335 GLY A 342 5 8 HELIX 14 14 SER A 355 VAL A 367 1 13 HELIX 15 15 SER A 371 THR A 383 1 13 HELIX 16 16 ASP A 390 VAL A 407 1 18 HELIX 17 17 VAL A 407 ALA A 420 1 14 HELIX 18 18 PRO A 440 GLY A 444 5 5 HELIX 19 19 GLU A 450 GLY A 456 1 7 HELIX 20 20 LEU A 457 ASP A 460 5 4 HELIX 21 21 THR A 466 GLY A 487 1 22 HELIX 22 22 ARG A 525 ARG A 534 1 10 SHEET 1 A 3 LEU A 9 ARG A 11 0 SHEET 2 A 3 GLN A 16 ARG A 18 -1 O LEU A 17 N VAL A 10 SHEET 3 A 3 VAL A 59 ASP A 61 1 O LEU A 60 N GLN A 16 SHEET 1 B11 ILE A 20 LYS A 23 0 SHEET 2 B11 PRO A 28 PRO A 36 -1 O ALA A 31 N ILE A 20 SHEET 3 B11 TYR A 98 PRO A 104 -1 O VAL A 101 N PHE A 32 SHEET 4 B11 VAL A 145 MET A 149 -1 O SER A 148 N ASN A 100 SHEET 5 B11 THR A 112 ILE A 118 1 N TRP A 117 O VAL A 147 SHEET 6 B11 GLY A 192 GLU A 202 1 O ASP A 193 N THR A 112 SHEET 7 B11 ARG A 224 GLN A 228 1 O GLN A 228 N GLY A 201 SHEET 8 B11 GLN A 325 VAL A 331 1 O LEU A 327 N LEU A 227 SHEET 9 B11 ARG A 424 PHE A 430 1 O TYR A 426 N VAL A 328 SHEET 10 B11 GLN A 509 LEU A 513 1 O LEU A 513 N ILE A 429 SHEET 11 B11 VAL A 520 ARG A 522 -1 O ARG A 521 N TYR A 510 SHEET 1 C 2 VAL A 68 CYS A 69 0 SHEET 2 C 2 LEU A 92 SER A 93 1 O SER A 93 N VAL A 68 SHEET 1 D 2 VAL A 239 SER A 240 0 SHEET 2 D 2 VAL A 302 VAL A 303 1 O VAL A 303 N VAL A 239 SHEET 1 E 2 MET B 2 SER B 5 0 SHEET 2 E 2 ILE B 13 ASN B 16 -1 O THR B 15 N CYS B 3 SHEET 1 F 3 VAL B 34 CYS B 39 0 SHEET 2 F 3 CYS B 22 ARG B 27 -1 N LYS B 25 O GLY B 36 SHEET 3 F 3 LEU B 48 CYS B 53 -1 O GLU B 49 N SER B 26 SSBOND 1 CYS A 69 CYS A 96 1555 1555 2.05 SSBOND 2 CYS A 257 CYS A 272 1555 1555 2.05 SSBOND 3 CYS A 409 CYS A 529 1555 1555 2.05 SSBOND 4 CYS B 3 CYS B 22 1555 1555 2.02 SSBOND 5 CYS B 17 CYS B 39 1555 1555 2.04 SSBOND 6 CYS B 41 CYS B 52 1555 1555 2.04 SSBOND 7 CYS B 53 CYS B 59 1555 1555 2.04 LINK ND2 ASN A 350 C1 NAG A1509 1555 1555 1.46 CISPEP 1 TYR A 105 PRO A 106 0 0.18 CISPEP 2 CYS A 257 PRO A 258 0 0.25 CISPEP 3 PRO B 30 PRO B 31 0 -0.09 CISPEP 4 SER B 55 PRO B 56 0 -0.17 CRYST1 73.800 73.800 548.620 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013550 0.007823 0.000000 0.00000 SCALE2 0.000000 0.015646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001823 0.00000 MASTER 418 0 2 22 23 0 0 6 0 0 0 48 END