HEADER OXIDOREDUCTASE 21-DEC-01 1KOL TITLE CRYSTAL STRUCTURE OF FORMALDEHYDE DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUTATHIONE-INDEPENDENT FORMALDEHYDE DEHYDROGENASE; COMPND 5 EC: 1.2.1.46; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.TANAKA,Y.KUSAKABE,K.ITO,T.YOSHIMOTO,K.T.NAKAMURA REVDAT 3 13-JUL-11 1KOL 1 VERSN REVDAT 2 24-FEB-09 1KOL 1 VERSN REVDAT 1 11-DEC-02 1KOL 0 JRNL AUTH N.TANAKA,Y.KUSAKABE,K.ITO,T.YOSHIMOTO,K.T.NAKAMURA JRNL TITL CRYSTAL STRUCTURE OF FORMALDEHYDE DEHYDROGENASE FROM JRNL TITL 2 PSEUDOMONAS PUTIDA: THE STRUCTURAL ORIGIN OF THE TIGHTLY JRNL TITL 3 BOUND COFACTOR IN NICOTINOPROTEIN DEHYDROGENASES JRNL REF J.MOL.BIOL. V. 324 519 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12445786 JRNL DOI 10.1016/S0022-2836(02)01066-5 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 89312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.280 REMARK 3 FREE R VALUE TEST SET COUNT : 4714 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5868 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 967 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.009 ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KOL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-01. REMARK 100 THE RCSB ID CODE IS RCSB015175. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94085 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 10.000 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.27300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, AMMONIUM SULFATE, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.58400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 127.16800 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 127.16800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.58400 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER. TWO SUBUNITS (1/2 REMARK 300 TETRAMER) EXIST IN AN ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -279.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -42.84300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 74.20625 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 190.75200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ALA A 398 REMARK 465 SER B 1 REMARK 465 ALA B 398 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1524 O HOH A 1630 4555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 162 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 267 CD - NE - CZ ANGL. DEV. = 18.1 DEGREES REMARK 500 ARG A 267 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 291 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 345 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 374 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 101 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 PHE B 146 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG B 291 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 355 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 79 40.51 -109.73 REMARK 500 ARG A 99 31.21 -140.55 REMARK 500 ARG A 154 -61.72 -27.67 REMARK 500 ASP A 169 -69.05 -161.15 REMARK 500 ALA A 278 89.39 -152.90 REMARK 500 ASN A 357 64.73 -116.41 REMARK 500 ASP B 153 134.41 -37.63 REMARK 500 ARG B 154 -63.93 -26.32 REMARK 500 ASP B 169 -66.88 -160.38 REMARK 500 ASN B 357 68.42 -110.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1596 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH A1646 DISTANCE = 5.26 ANGSTROMS REMARK 525 HOH A1698 DISTANCE = 5.15 ANGSTROMS REMARK 525 HOH A1790 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH A1811 DISTANCE = 5.60 ANGSTROMS REMARK 525 HOH A1823 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A1841 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH A1870 DISTANCE = 5.15 ANGSTROMS REMARK 525 HOH B2891 DISTANCE = 5.35 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 67 NE2 REMARK 620 2 ASP A 169 OD1 97.0 REMARK 620 3 CYS A 46 SG 114.0 118.1 REMARK 620 4 HOH A1404 O 98.0 115.8 111.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 67 NE2 REMARK 620 2 ASP B 169 OD1 98.5 REMARK 620 3 CYS B 46 SG 114.7 116.9 REMARK 620 4 HOH B2404 O 98.2 111.3 114.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 103 SG 120.9 REMARK 620 3 CYS A 111 SG 99.4 106.8 REMARK 620 4 CYS A 100 SG 108.5 105.0 117.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 111 SG REMARK 620 2 CYS B 97 SG 98.8 REMARK 620 3 CYS B 100 SG 116.8 109.5 REMARK 620 4 CYS B 103 SG 106.0 120.4 105.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 2403 DBREF 1KOL A 1 398 UNP P46154 FADH_PSEPU 1 398 DBREF 1KOL B 1 398 UNP P46154 FADH_PSEPU 1 398 SEQADV 1KOL VAL A 139 UNP P46154 LEU 139 SEE REMARK 999 SEQADV 1KOL VAL B 139 UNP P46154 LEU 139 SEE REMARK 999 SEQRES 1 A 398 SER GLY ASN ARG GLY VAL VAL TYR LEU GLY SER GLY LYS SEQRES 2 A 398 VAL GLU VAL GLN LYS ILE ASP TYR PRO LYS MET GLN ASP SEQRES 3 A 398 PRO ARG GLY LYS LYS ILE GLU HIS GLY VAL ILE LEU LYS SEQRES 4 A 398 VAL VAL SER THR ASN ILE CYS GLY SER ASP GLN HIS MET SEQRES 5 A 398 VAL ARG GLY ARG THR THR ALA GLN VAL GLY LEU VAL LEU SEQRES 6 A 398 GLY HIS GLU ILE THR GLY GLU VAL ILE GLU LYS GLY ARG SEQRES 7 A 398 ASP VAL GLU ASN LEU GLN ILE GLY ASP LEU VAL SER VAL SEQRES 8 A 398 PRO PHE ASN VAL ALA CYS GLY ARG CYS ARG SER CYS LYS SEQRES 9 A 398 GLU MET HIS THR GLY VAL CYS LEU THR VAL ASN PRO ALA SEQRES 10 A 398 ARG ALA GLY GLY ALA TYR GLY TYR VAL ASP MET GLY ASP SEQRES 11 A 398 TRP THR GLY GLY GLN ALA GLU TYR VAL LEU VAL PRO TYR SEQRES 12 A 398 ALA ASP PHE ASN LEU LEU LYS LEU PRO ASP ARG ASP LYS SEQRES 13 A 398 ALA MET GLU LYS ILE ARG ASP LEU THR CYS LEU SER ASP SEQRES 14 A 398 ILE LEU PRO THR GLY TYR HIS GLY ALA VAL THR ALA GLY SEQRES 15 A 398 VAL GLY PRO GLY SER THR VAL TYR VAL ALA GLY ALA GLY SEQRES 16 A 398 PRO VAL GLY LEU ALA ALA ALA ALA SER ALA ARG LEU LEU SEQRES 17 A 398 GLY ALA ALA VAL VAL ILE VAL GLY ASP LEU ASN PRO ALA SEQRES 18 A 398 ARG LEU ALA HIS ALA LYS ALA GLN GLY PHE GLU ILE ALA SEQRES 19 A 398 ASP LEU SER LEU ASP THR PRO LEU HIS GLU GLN ILE ALA SEQRES 20 A 398 ALA LEU LEU GLY GLU PRO GLU VAL ASP CYS ALA VAL ASP SEQRES 21 A 398 ALA VAL GLY PHE GLU ALA ARG GLY HIS GLY HIS GLU GLY SEQRES 22 A 398 ALA LYS HIS GLU ALA PRO ALA THR VAL LEU ASN SER LEU SEQRES 23 A 398 MET GLN VAL THR ARG VAL ALA GLY LYS ILE GLY ILE PRO SEQRES 24 A 398 GLY LEU TYR VAL THR GLU ASP PRO GLY ALA VAL ASP ALA SEQRES 25 A 398 ALA ALA LYS ILE GLY SER LEU SER ILE ARG PHE GLY LEU SEQRES 26 A 398 GLY TRP ALA LYS SER HIS SER PHE HIS THR GLY GLN THR SEQRES 27 A 398 PRO VAL MET LYS TYR ASN ARG ALA LEU MET GLN ALA ILE SEQRES 28 A 398 MET TRP ASP ARG ILE ASN ILE ALA GLU VAL VAL GLY VAL SEQRES 29 A 398 GLN VAL ILE SER LEU ASP ASP ALA PRO ARG GLY TYR GLY SEQRES 30 A 398 GLU PHE ASP ALA GLY VAL PRO LYS LYS PHE VAL ILE ASP SEQRES 31 A 398 PRO HIS LYS THR PHE SER ALA ALA SEQRES 1 B 398 SER GLY ASN ARG GLY VAL VAL TYR LEU GLY SER GLY LYS SEQRES 2 B 398 VAL GLU VAL GLN LYS ILE ASP TYR PRO LYS MET GLN ASP SEQRES 3 B 398 PRO ARG GLY LYS LYS ILE GLU HIS GLY VAL ILE LEU LYS SEQRES 4 B 398 VAL VAL SER THR ASN ILE CYS GLY SER ASP GLN HIS MET SEQRES 5 B 398 VAL ARG GLY ARG THR THR ALA GLN VAL GLY LEU VAL LEU SEQRES 6 B 398 GLY HIS GLU ILE THR GLY GLU VAL ILE GLU LYS GLY ARG SEQRES 7 B 398 ASP VAL GLU ASN LEU GLN ILE GLY ASP LEU VAL SER VAL SEQRES 8 B 398 PRO PHE ASN VAL ALA CYS GLY ARG CYS ARG SER CYS LYS SEQRES 9 B 398 GLU MET HIS THR GLY VAL CYS LEU THR VAL ASN PRO ALA SEQRES 10 B 398 ARG ALA GLY GLY ALA TYR GLY TYR VAL ASP MET GLY ASP SEQRES 11 B 398 TRP THR GLY GLY GLN ALA GLU TYR VAL LEU VAL PRO TYR SEQRES 12 B 398 ALA ASP PHE ASN LEU LEU LYS LEU PRO ASP ARG ASP LYS SEQRES 13 B 398 ALA MET GLU LYS ILE ARG ASP LEU THR CYS LEU SER ASP SEQRES 14 B 398 ILE LEU PRO THR GLY TYR HIS GLY ALA VAL THR ALA GLY SEQRES 15 B 398 VAL GLY PRO GLY SER THR VAL TYR VAL ALA GLY ALA GLY SEQRES 16 B 398 PRO VAL GLY LEU ALA ALA ALA ALA SER ALA ARG LEU LEU SEQRES 17 B 398 GLY ALA ALA VAL VAL ILE VAL GLY ASP LEU ASN PRO ALA SEQRES 18 B 398 ARG LEU ALA HIS ALA LYS ALA GLN GLY PHE GLU ILE ALA SEQRES 19 B 398 ASP LEU SER LEU ASP THR PRO LEU HIS GLU GLN ILE ALA SEQRES 20 B 398 ALA LEU LEU GLY GLU PRO GLU VAL ASP CYS ALA VAL ASP SEQRES 21 B 398 ALA VAL GLY PHE GLU ALA ARG GLY HIS GLY HIS GLU GLY SEQRES 22 B 398 ALA LYS HIS GLU ALA PRO ALA THR VAL LEU ASN SER LEU SEQRES 23 B 398 MET GLN VAL THR ARG VAL ALA GLY LYS ILE GLY ILE PRO SEQRES 24 B 398 GLY LEU TYR VAL THR GLU ASP PRO GLY ALA VAL ASP ALA SEQRES 25 B 398 ALA ALA LYS ILE GLY SER LEU SER ILE ARG PHE GLY LEU SEQRES 26 B 398 GLY TRP ALA LYS SER HIS SER PHE HIS THR GLY GLN THR SEQRES 27 B 398 PRO VAL MET LYS TYR ASN ARG ALA LEU MET GLN ALA ILE SEQRES 28 B 398 MET TRP ASP ARG ILE ASN ILE ALA GLU VAL VAL GLY VAL SEQRES 29 B 398 GLN VAL ILE SER LEU ASP ASP ALA PRO ARG GLY TYR GLY SEQRES 30 B 398 GLU PHE ASP ALA GLY VAL PRO LYS LYS PHE VAL ILE ASP SEQRES 31 B 398 PRO HIS LYS THR PHE SER ALA ALA HET ZN A1001 1 HET ZN A1002 1 HET ZN B1003 1 HET ZN B1004 1 HET SO4 A1003 5 HET SO4 B1002 5 HET NAD A1403 44 HET NAD B2403 44 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 ZN 4(ZN 2+) FORMUL 7 SO4 2(O4 S 2-) FORMUL 9 NAD 2(C21 H27 N7 O14 P2) FORMUL 11 HOH *967(H2 O) HELIX 1 1 CYS A 46 ARG A 54 1 9 HELIX 2 2 CYS A 100 GLU A 105 1 6 HELIX 3 3 HIS A 107 CYS A 111 5 5 HELIX 4 4 TYR A 143 LEU A 148 1 6 HELIX 5 5 ASP A 153 LYS A 160 1 8 HELIX 6 6 LYS A 160 THR A 165 1 6 HELIX 7 7 CYS A 166 SER A 168 5 3 HELIX 8 8 ASP A 169 ALA A 181 1 13 HELIX 9 9 GLY A 195 LEU A 208 1 14 HELIX 10 10 ASN A 219 GLN A 229 1 11 HELIX 11 11 PRO A 241 GLY A 251 1 11 HELIX 12 12 GLU A 272 HIS A 276 5 5 HELIX 13 13 ALA A 280 THR A 290 1 11 HELIX 14 14 ASP A 311 ILE A 316 1 6 HELIX 15 15 ARG A 322 LYS A 329 1 8 HELIX 16 16 PRO A 339 TRP A 353 1 15 HELIX 17 17 ASN A 357 GLY A 363 1 7 HELIX 18 18 SER A 368 ASP A 370 5 3 HELIX 19 19 ASP A 371 GLY A 382 1 12 HELIX 20 20 CYS B 46 ARG B 54 1 9 HELIX 21 21 CYS B 100 GLU B 105 1 6 HELIX 22 22 HIS B 107 CYS B 111 5 5 HELIX 23 23 TYR B 143 LEU B 148 1 6 HELIX 24 24 ASP B 153 LYS B 160 1 8 HELIX 25 25 LYS B 160 THR B 165 1 6 HELIX 26 26 CYS B 166 SER B 168 5 3 HELIX 27 27 ASP B 169 ALA B 181 1 13 HELIX 28 28 GLY B 195 LEU B 208 1 14 HELIX 29 29 ASN B 219 GLN B 229 1 11 HELIX 30 30 PRO B 241 GLY B 251 1 11 HELIX 31 31 GLU B 272 HIS B 276 5 5 HELIX 32 32 ALA B 280 THR B 290 1 11 HELIX 33 33 ALA B 313 GLY B 317 5 5 HELIX 34 34 ARG B 322 LYS B 329 1 8 HELIX 35 35 PRO B 339 LYS B 342 5 4 HELIX 36 36 TYR B 343 TRP B 353 1 11 HELIX 37 37 ASN B 357 GLY B 363 1 7 HELIX 38 38 SER B 368 ASP B 370 5 3 HELIX 39 39 ASP B 371 ALA B 381 1 11 SHEET 1 A 2 ASN A 3 GLY A 10 0 SHEET 2 A 2 LYS A 13 ILE A 19 -1 O GLU A 15 N VAL A 7 SHEET 1 B 5 LEU A 149 LYS A 150 0 SHEET 2 B 5 LEU A 88 SER A 90 -1 N SER A 90 O LEU A 149 SHEET 3 B 5 ILE A 69 LYS A 76 -1 N GLY A 71 O VAL A 89 SHEET 4 B 5 VAL A 36 ASN A 44 -1 N LYS A 39 O GLU A 72 SHEET 5 B 5 TYR A 138 VAL A 141 -1 O VAL A 139 N LEU A 38 SHEET 1 C 6 LEU A 149 LYS A 150 0 SHEET 2 C 6 LEU A 88 SER A 90 -1 N SER A 90 O LEU A 149 SHEET 3 C 6 ILE A 69 LYS A 76 -1 N GLY A 71 O VAL A 89 SHEET 4 C 6 VAL A 36 ASN A 44 -1 N LYS A 39 O GLU A 72 SHEET 5 C 6 LYS A 386 ILE A 389 -1 O ILE A 389 N THR A 43 SHEET 6 C 6 VAL A 364 ILE A 367 1 N GLN A 365 O VAL A 388 SHEET 1 D 2 ASN A 94 VAL A 95 0 SHEET 2 D 2 GLY A 121 ALA A 122 -1 O GLY A 121 N VAL A 95 SHEET 1 E 6 GLU A 232 ASP A 235 0 SHEET 2 E 6 VAL A 212 ASP A 217 1 N VAL A 215 O GLU A 232 SHEET 3 E 6 THR A 188 ALA A 192 1 N VAL A 191 O ILE A 214 SHEET 4 E 6 CYS A 257 ASP A 260 1 O VAL A 259 N ALA A 192 SHEET 5 E 6 LYS A 295 ILE A 298 1 O GLY A 297 N ALA A 258 SHEET 6 E 6 SER A 332 THR A 335 1 O HIS A 334 N ILE A 298 SHEET 1 F 2 ASN B 3 GLY B 10 0 SHEET 2 F 2 LYS B 13 ILE B 19 -1 O GLU B 15 N VAL B 7 SHEET 1 G 5 LEU B 149 LYS B 150 0 SHEET 2 G 5 LEU B 88 SER B 90 -1 N SER B 90 O LEU B 149 SHEET 3 G 5 ILE B 69 LYS B 76 -1 N GLY B 71 O VAL B 89 SHEET 4 G 5 VAL B 36 ASN B 44 -1 N LYS B 39 O GLU B 72 SHEET 5 G 5 TYR B 138 VAL B 141 -1 O VAL B 139 N LEU B 38 SHEET 1 H 6 LEU B 149 LYS B 150 0 SHEET 2 H 6 LEU B 88 SER B 90 -1 N SER B 90 O LEU B 149 SHEET 3 H 6 ILE B 69 LYS B 76 -1 N GLY B 71 O VAL B 89 SHEET 4 H 6 VAL B 36 ASN B 44 -1 N LYS B 39 O GLU B 72 SHEET 5 H 6 LYS B 386 ILE B 389 -1 O ILE B 389 N THR B 43 SHEET 6 H 6 VAL B 364 ILE B 367 1 N ILE B 367 O VAL B 388 SHEET 1 I 2 ASN B 94 VAL B 95 0 SHEET 2 I 2 GLY B 121 ALA B 122 -1 O GLY B 121 N VAL B 95 SHEET 1 J 6 GLU B 232 ASP B 235 0 SHEET 2 J 6 VAL B 212 ASP B 217 1 N VAL B 215 O GLU B 232 SHEET 3 J 6 THR B 188 ALA B 192 1 N VAL B 191 O GLY B 216 SHEET 4 J 6 CYS B 257 ASP B 260 1 O VAL B 259 N ALA B 192 SHEET 5 J 6 LYS B 295 ILE B 298 1 O GLY B 297 N ALA B 258 SHEET 6 J 6 SER B 332 THR B 335 1 O SER B 332 N ILE B 296 LINK ZN ZN A1001 NE2 HIS A 67 1555 1555 2.01 LINK ZN ZN A1001 OD1 ASP A 169 1555 1555 1.92 LINK ZN ZN B1003 NE2 HIS B 67 1555 1555 2.06 LINK ZN ZN B1003 OD1 ASP B 169 1555 1555 1.92 LINK ZN ZN A1001 SG CYS A 46 1555 1555 2.29 LINK ZN ZN A1001 O HOH A1404 1555 1555 1.96 LINK ZN ZN A1002 SG CYS A 97 1555 1555 2.33 LINK ZN ZN A1002 SG CYS A 103 1555 1555 2.27 LINK ZN ZN A1002 SG CYS A 111 1555 1555 2.31 LINK ZN ZN A1002 SG CYS A 100 1555 1555 2.31 LINK ZN ZN B1003 SG CYS B 46 1555 1555 2.27 LINK ZN ZN B1003 O HOH B2404 1555 1555 2.00 LINK ZN ZN B1004 SG CYS B 111 1555 1555 2.37 LINK ZN ZN B1004 SG CYS B 97 1555 1555 2.32 LINK ZN ZN B1004 SG CYS B 100 1555 1555 2.28 LINK ZN ZN B1004 SG CYS B 103 1555 1555 2.32 SITE 1 AC1 5 CYS A 46 HIS A 67 ASP A 169 NAD A1403 SITE 2 AC1 5 HOH A1404 SITE 1 AC2 4 CYS A 97 CYS A 100 CYS A 103 CYS A 111 SITE 1 AC3 5 CYS B 46 HIS B 67 ASP B 169 NAD B2403 SITE 2 AC3 5 HOH B2404 SITE 1 AC4 4 CYS B 97 CYS B 100 CYS B 103 CYS B 111 SITE 1 AC5 8 PRO A 241 LEU A 242 HIS A 269 HOH A1548 SITE 2 AC5 8 HOH A1618 HOH A1634 HOH A1735 HOH A1836 SITE 1 AC6 7 PRO B 241 LEU B 242 HIS B 269 HOH B2656 SITE 2 AC6 7 HOH B2667 HOH B2718 HOH B2846 SITE 1 AC7 35 GLY A 47 SER A 48 GLN A 50 HIS A 51 SITE 2 AC7 35 PHE A 93 ASP A 169 THR A 173 GLY A 193 SITE 3 AC7 35 GLY A 195 PRO A 196 VAL A 197 GLY A 216 SITE 4 AC7 35 ASP A 217 LEU A 218 ARG A 222 ALA A 261 SITE 5 AC7 35 VAL A 262 ALA A 266 ARG A 267 HIS A 269 SITE 6 AC7 35 VAL A 282 PRO A 299 LEU A 301 TRP A 327 SITE 7 AC7 35 GLY A 336 GLN A 337 THR A 338 PHE A 379 SITE 8 AC7 35 ZN A1001 HOH A1409 HOH A1415 HOH A1426 SITE 9 AC7 35 HOH A1450 HOH A1467 HOH A1579 SITE 1 AC8 40 GLY B 47 SER B 48 GLN B 50 HIS B 51 SITE 2 AC8 40 PHE B 93 ASP B 169 THR B 173 GLY B 193 SITE 3 AC8 40 GLY B 195 PRO B 196 VAL B 197 GLY B 216 SITE 4 AC8 40 ASP B 217 LEU B 218 ARG B 222 LEU B 236 SITE 5 AC8 40 ALA B 261 VAL B 262 ALA B 266 ARG B 267 SITE 6 AC8 40 HIS B 269 VAL B 282 PRO B 299 LEU B 301 SITE 7 AC8 40 TRP B 327 GLY B 336 GLN B 337 THR B 338 SITE 8 AC8 40 PHE B 379 ZN B1003 HOH B2404 HOH B2422 SITE 9 AC8 40 HOH B2425 HOH B2427 HOH B2482 HOH B2490 SITE 10 AC8 40 HOH B2503 HOH B2602 HOH B2670 HOH B2691 CRYST1 85.686 85.686 190.752 90.00 90.00 120.00 P 31 1 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011670 0.006740 0.000000 0.00000 SCALE2 0.000000 0.013480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005240 0.00000 MASTER 384 0 8 39 42 0 29 6 0 0 0 62 END