HEADER TRANSFERASE 20-DEC-01 1KOF TITLE CRYSTAL STRUCTURE OF GLUCONATE KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCONATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THERMORESISTANT GLUCONOKINASE; COMPND 5 EC: 2.7.1.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GNTK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJF119EH KEYWDS ALFA/BETA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.KRAFT,G.A.SPRENGER,Y.LINDQVIST REVDAT 4 16-MAY-18 1KOF 1 REMARK REVDAT 3 24-FEB-09 1KOF 1 VERSN REVDAT 2 04-DEC-02 1KOF 1 REMARK REVDAT 1 29-MAY-02 1KOF 0 JRNL AUTH L.KRAFT,G.A.SPRENGER,Y.LINDQVIST JRNL TITL CONFORMATIONAL CHANGES DURING THE CATALYTIC CYCLE OF JRNL TITL 2 GLUCONATE KINASE AS REVEALED BY X-RAY CRYSTALLOGRAPHY. JRNL REF J.MOL.BIOL. V. 318 1057 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12054802 JRNL DOI 10.1016/S0022-2836(02)00215-2 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 10542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 575 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 598 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4290 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.4510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2694 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.09000 REMARK 3 B22 (A**2) : 1.97000 REMARK 3 B33 (A**2) : -5.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.435 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.443 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.208 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2812 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3814 ; 2.164 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 4.349 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 506 ;18.527 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 432 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2090 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1398 ; 0.299 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 211 ; 0.259 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 90 ; 0.526 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.586 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1700 ; 0.835 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2738 ; 1.504 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1112 ; 2.433 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1076 ; 3.775 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-02. REMARK 100 THE DEPOSITION ID IS D_1000015169. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.093 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 1000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9047 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, PH 7.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.20500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 174 REMARK 465 LYS A 175 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 174 REMARK 465 LYS B 175 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 55 O HOH B 1018 1.87 REMARK 500 O ALA B 123 O HOH B 1009 1.97 REMARK 500 NE2 GLN A 67 O HOH A 1030 2.03 REMARK 500 NH2 ARG A 78 O HOH A 1033 2.04 REMARK 500 OE2 GLU B 27 NE2 GLN B 31 2.04 REMARK 500 OD1 ASP A 59 OH TYR A 94 2.07 REMARK 500 N PHE B 128 O HOH B 1033 2.12 REMARK 500 NH1 ARG B 46 O HOH B 1022 2.17 REMARK 500 O HOH A 1007 O HOH A 1008 2.18 REMARK 500 O GLY A 162 OG SER A 166 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CA GLN A 142 O HOH B 1019 2546 0.69 REMARK 500 C GLN A 142 O HOH B 1019 2546 1.34 REMARK 500 N GLN A 142 O HOH B 1019 2546 1.81 REMARK 500 O HOH A 1022 O HOH B 1020 2545 1.81 REMARK 500 N GLU A 143 O HOH B 1019 2546 1.95 REMARK 500 CE LYS A 125 O HOH B 1020 2545 2.06 REMARK 500 CB GLN A 142 O HOH B 1019 2546 2.10 REMARK 500 NZ LYS A 125 O HOH B 1020 2545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 7 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 59 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 60 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 62 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 150 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP B 38 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 40 CB - CG - OD2 ANGL. DEV. = 9.3 DEGREES REMARK 500 ASP B 59 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 150 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 155 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 45 -32.06 -32.54 REMARK 500 CYS A 87 118.51 178.25 REMARK 500 ASN A 102 69.09 -101.10 REMARK 500 ASN A 104 40.91 -94.19 REMARK 500 LEU A 110 82.39 -67.05 REMARK 500 GLN A 142 72.64 -118.73 REMARK 500 GLU A 143 115.81 -27.78 REMARK 500 PRO A 144 105.70 -46.30 REMARK 500 ASP A 157 71.95 -67.85 REMARK 500 ASN B 5 88.15 -67.89 REMARK 500 HIS B 6 29.95 -64.73 REMARK 500 VAL B 16 177.60 -51.97 REMARK 500 ARG B 45 -36.74 -37.50 REMARK 500 CYS B 87 107.69 -164.44 REMARK 500 ALA B 89 70.66 22.46 REMARK 500 LEU B 160 -57.15 -21.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 22 OG REMARK 620 2 ACP B 501 O2G 118.3 REMARK 620 3 ACP B 501 O1B 85.4 58.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ACP A 500 O1B REMARK 620 2 SER A 22 OG 98.3 REMARK 620 3 HOH A1023 O 123.3 78.4 REMARK 620 4 ACP A 500 O2G 90.9 170.7 97.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KNQ RELATED DB: PDB REMARK 900 1KNQ CONTAINS THE SAME PROTEIN, SPACE GROUP P212121. REMARK 900 RELATED ID: 1KO1 RELATED DB: PDB REMARK 900 1KO1 CONTAINS THE SAME PROTEIN, SPACE GROUP C2. REMARK 900 RELATED ID: 1KO4 RELATED DB: PDB REMARK 900 1KO4 CONTAINS THE SAME PROTEIN, SPACE GROUP P21212. REMARK 900 RELATED ID: 1KO5 RELATED DB: PDB REMARK 900 1KO5 CONTAINS THE SAME PROTEIN COMPLEXED WITH ATP. REMARK 900 RELATED ID: 1KO8 RELATED DB: PDB REMARK 900 1KO8 CONTAINS THE SAME PROTEIN COMPLEXED WITH GLUCONATE-6-PHOSPHATE. DBREF 1KOF A 1 175 UNP P46859 GNTK_ECOLI 0 174 DBREF 1KOF B 1 175 UNP P46859 GNTK_ECOLI 0 174 SEQRES 1 A 175 MET SER THR THR ASN HIS ASP HIS HIS ILE TYR VAL LEU SEQRES 2 A 175 MET GLY VAL SER GLY SER GLY LYS SER ALA VAL ALA SER SEQRES 3 A 175 GLU VAL ALA HIS GLN LEU HIS ALA ALA PHE LEU ASP GLY SEQRES 4 A 175 ASP PHE LEU HIS PRO ARG ARG ASN ILE GLU LYS MET ALA SEQRES 5 A 175 SER GLY GLU PRO LEU ASN ASP ASP ASP ARG LYS PRO TRP SEQRES 6 A 175 LEU GLN ALA LEU ASN ASP ALA ALA PHE ALA MET GLN ARG SEQRES 7 A 175 THR ASN LYS VAL SER LEU ILE VAL CYS SER ALA LEU LYS SEQRES 8 A 175 LYS HIS TYR ARG ASP LEU LEU ARG GLU GLY ASN PRO ASN SEQRES 9 A 175 LEU SER PHE ILE TYR LEU LYS GLY ASP PHE ASP VAL ILE SEQRES 10 A 175 GLU SER ARG LEU LYS ALA ARG LYS GLY HIS PHE PHE LYS SEQRES 11 A 175 THR GLN MET LEU VAL THR GLN PHE GLU THR LEU GLN GLU SEQRES 12 A 175 PRO GLY ALA ASP GLU THR ASP VAL LEU VAL VAL ASP ILE SEQRES 13 A 175 ASP GLN PRO LEU GLU GLY VAL VAL ALA SER THR ILE GLU SEQRES 14 A 175 VAL ILE LYS LYS GLY LYS SEQRES 1 B 175 MET SER THR THR ASN HIS ASP HIS HIS ILE TYR VAL LEU SEQRES 2 B 175 MET GLY VAL SER GLY SER GLY LYS SER ALA VAL ALA SER SEQRES 3 B 175 GLU VAL ALA HIS GLN LEU HIS ALA ALA PHE LEU ASP GLY SEQRES 4 B 175 ASP PHE LEU HIS PRO ARG ARG ASN ILE GLU LYS MET ALA SEQRES 5 B 175 SER GLY GLU PRO LEU ASN ASP ASP ASP ARG LYS PRO TRP SEQRES 6 B 175 LEU GLN ALA LEU ASN ASP ALA ALA PHE ALA MET GLN ARG SEQRES 7 B 175 THR ASN LYS VAL SER LEU ILE VAL CYS SER ALA LEU LYS SEQRES 8 B 175 LYS HIS TYR ARG ASP LEU LEU ARG GLU GLY ASN PRO ASN SEQRES 9 B 175 LEU SER PHE ILE TYR LEU LYS GLY ASP PHE ASP VAL ILE SEQRES 10 B 175 GLU SER ARG LEU LYS ALA ARG LYS GLY HIS PHE PHE LYS SEQRES 11 B 175 THR GLN MET LEU VAL THR GLN PHE GLU THR LEU GLN GLU SEQRES 12 B 175 PRO GLY ALA ASP GLU THR ASP VAL LEU VAL VAL ASP ILE SEQRES 13 B 175 ASP GLN PRO LEU GLU GLY VAL VAL ALA SER THR ILE GLU SEQRES 14 B 175 VAL ILE LYS LYS GLY LYS HET MG A1001 1 HET ACP A 500 31 HET MG B1002 1 HET ACP B 501 31 HETNAM MG MAGNESIUM ION HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 ACP 2(C11 H18 N5 O12 P3) FORMUL 7 HOH *67(H2 O) HELIX 1 1 GLY A 20 HIS A 33 1 14 HELIX 2 2 ASP A 40 HIS A 43 5 4 HELIX 3 3 PRO A 44 SER A 53 1 10 HELIX 4 4 ARG A 62 GLN A 77 1 16 HELIX 5 5 LYS A 91 GLU A 100 1 10 HELIX 6 6 ASP A 113 ARG A 124 1 12 HELIX 7 7 LYS A 130 LEU A 141 1 12 HELIX 8 8 PRO A 159 LYS A 173 1 15 HELIX 9 9 GLY B 20 HIS B 33 1 14 HELIX 10 10 ASP B 40 HIS B 43 5 4 HELIX 11 11 PRO B 44 SER B 53 1 10 HELIX 12 12 ARG B 62 GLN B 77 1 16 HELIX 13 13 LYS B 91 GLU B 100 1 10 HELIX 14 14 ASP B 113 ALA B 123 1 11 HELIX 15 15 LYS B 130 LEU B 141 1 12 HELIX 16 16 PRO B 159 LYS B 173 1 15 SHEET 1 A 5 ALA A 35 ASP A 38 0 SHEET 2 A 5 VAL A 82 VAL A 86 1 O LEU A 84 N ALA A 35 SHEET 3 A 5 HIS A 9 MET A 14 1 N TYR A 11 O SER A 83 SHEET 4 A 5 LEU A 105 LYS A 111 1 O SER A 106 N VAL A 12 SHEET 5 A 5 VAL A 151 ASP A 155 1 O LEU A 152 N TYR A 109 SHEET 1 B 5 ALA B 35 ASP B 38 0 SHEET 2 B 5 VAL B 82 VAL B 86 1 O LEU B 84 N ALA B 35 SHEET 3 B 5 HIS B 9 MET B 14 1 N TYR B 11 O SER B 83 SHEET 4 B 5 LEU B 105 LYS B 111 1 O LEU B 110 N MET B 14 SHEET 5 B 5 VAL B 151 ASP B 155 1 O VAL B 154 N TYR B 109 LINK MG MG B1002 OG SER B 22 1555 1555 2.16 LINK MG MG A1001 O1B ACP A 500 1555 1555 2.63 LINK MG MG A1001 OG SER A 22 1555 1555 2.79 LINK MG MG A1001 O HOH A1023 1555 1555 2.25 LINK MG MG A1001 O2G ACP A 500 1555 1555 2.21 LINK MG MG B1002 O2G ACP B 501 1555 1555 2.24 LINK MG MG B1002 O1B ACP B 501 1555 1555 2.44 SITE 1 AC1 3 SER A 22 ACP A 500 HOH A1023 SITE 1 AC2 2 SER B 22 ACP B 501 SITE 1 AC3 14 VAL A 16 SER A 17 GLY A 18 SER A 19 SITE 2 AC3 14 GLY A 20 LYS A 21 SER A 22 ALA A 23 SITE 3 AC3 14 ARG A 120 GLN A 158 PRO A 159 LEU A 160 SITE 4 AC3 14 VAL A 163 MG A1001 SITE 1 AC4 13 SER B 17 GLY B 18 GLY B 20 LYS B 21 SITE 2 AC4 13 SER B 22 ALA B 23 ARG B 120 ARG B 124 SITE 3 AC4 13 GLN B 158 PRO B 159 LEU B 160 VAL B 163 SITE 4 AC4 13 MG B1002 CRYST1 42.740 88.410 51.480 90.00 105.76 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023397 0.000000 0.006603 0.00000 SCALE2 0.000000 0.011311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020184 0.00000 MASTER 402 0 4 16 10 0 10 6 0 0 0 28 END