HEADER RNA 10-DEC-01 1KKS TITLE STRUCTURE OF THE HISTONE MRNA HAIRPIN REQUIRED FOR CELL CYCLE TITLE 2 REGULATION OF HISTONE GENE EXPRESSION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*GP*GP*AP*AP*GP*GP*CP*CP*CP*UP*UP*UP*UP*CP*AP*GP*GP*GP COMPND 3 *CP*CP*AP*CP*CP*C)-3'; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: HISTONE MRNA 3'END HAIRPIN SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE COMES FROM THE HISTONE H4-12 GENE OF SOURCE 4 MUS MUSCULUS. IN VITRO TRANSCRIPTION USING T7 RNA POLYMERASE. KEYWDS RNA HAIRPIN, HISTONE MRNA, RNA PROCESSING, RNA EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR K.ZANIER,I.LUYTEN,C.CROMBIE,B.MULLER,D.SCHUEMPERLI,J.P.LINGE, AUTHOR 2 M.NILGES,M.SATTLER REVDAT 5 24-JAN-18 1KKS 1 AUTHOR REVDAT 4 01-FEB-17 1KKS 1 AUTHOR VERSN REVDAT 3 24-FEB-09 1KKS 1 VERSN REVDAT 2 01-APR-03 1KKS 1 JRNL REVDAT 1 13-MAR-02 1KKS 0 JRNL AUTH K.ZANIER,I.LUYTEN,C.CROMBIE,B.MULLER,D.SCHUMPERLI,J.P.LINGE, JRNL AUTH 2 M.NILGES,M.SATTLER JRNL TITL STRUCTURE OF THE HISTONE MRNA HAIRPIN REQUIRED FOR CELL JRNL TITL 2 CYCLE REGULATION OF HISTONE GENE EXPRESSION. JRNL REF RNA V. 8 29 2002 JRNL REFN ISSN 1355-8382 JRNL PMID 11871659 JRNL DOI 10.1017/S1355838202014061 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, AMBER 6.0 REMARK 3 AUTHORS : BRUKER, GERMANY (XWINNMR), CASE ET AL. (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE CALCULATED WITH 451 DISTANCE RESTRAINTS, 23 REMARK 3 HYDROGEN BOND RESTRAINTS AND 158 TORSION ANGLE RESTRAINTS. REMARK 3 THE STRUCTURES WERE CALCULATED IN ARIA/CNS AND REFINED USING AMBER. REMARK 4 REMARK 4 1KKS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-01. REMARK 100 THE DEPOSITION ID IS D_1000015059. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 285 REMARK 210 PH : 6.0; 6.0 REMARK 210 IONIC STRENGTH : 10 MM SODIUM PHOSPHATE, 0.1 MM REMARK 210 EDTA; 10 MM SODIUM PHOSPHATE, REMARK 210 0.1 MM EDTA REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM U-15N/13C 24MER RNA; 1 MM U REMARK 210 -15N 24MER RNA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C_HMQC-NOESY; 3D_HCCH REMARK 210 -E.COSY; 3D_HCC-TOCSY-CCH-E.COSY; REMARK 210 SPIN_ECHO_DIFFERENCE_CT-HSQC; REMARK 210 HNN-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.8, XEASY 1.2, ARIA/CNS REMARK 210 1.0 REMARK 210 METHOD USED : MOLECULAR DYNAMICS/SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM, REMARK 210 STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS, STRUCTURES WITH THE REMARK 210 LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 8 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING STANDARD HETERONUCLEAR REMARK 210 TRIPLE RESONANCE EXPERIMENTS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 A A 3 C4 - C5 - C6 ANGL. DEV. = -3.2 DEGREES REMARK 500 1 A A 3 C5 - C6 - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 A A 3 N1 - C6 - N6 ANGL. DEV. = -5.4 DEGREES REMARK 500 1 A A 4 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 A A 4 N1 - C6 - N6 ANGL. DEV. = -5.3 DEGREES REMARK 500 1 C A 7 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 C A 7 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 C A 8 C5' - C4' - O4' ANGL. DEV. = 6.9 DEGREES REMARK 500 1 C A 8 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 1 C A 9 C5' - C4' - O4' ANGL. DEV. = 5.9 DEGREES REMARK 500 1 C A 9 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 1 U A 10 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 U A 11 C3' - C2' - C1' ANGL. DEV. = 5.6 DEGREES REMARK 500 1 U A 12 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 U A 13 O4' - C1' - N1 ANGL. DEV. = 6.3 DEGREES REMARK 500 1 A A 15 C4 - C5 - C6 ANGL. DEV. = -3.1 DEGREES REMARK 500 1 A A 15 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 A A 15 N1 - C6 - N6 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 C A 19 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 C A 20 N3 - C2 - O2 ANGL. DEV. = -4.9 DEGREES REMARK 500 1 A A 21 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 A A 21 N1 - C6 - N6 ANGL. DEV. = -5.1 DEGREES REMARK 500 1 C A 22 N3 - C2 - O2 ANGL. DEV. = -4.4 DEGREES REMARK 500 1 C A 23 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 2 A A 3 C4 - C5 - C6 ANGL. DEV. = -3.1 DEGREES REMARK 500 2 A A 3 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 A A 3 N1 - C6 - N6 ANGL. DEV. = -5.5 DEGREES REMARK 500 2 A A 4 C5 - C6 - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 2 A A 4 N1 - C6 - N6 ANGL. DEV. = -4.9 DEGREES REMARK 500 2 C A 7 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 C A 7 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 2 C A 8 C5' - C4' - O4' ANGL. DEV. = 7.2 DEGREES REMARK 500 2 C A 8 N3 - C2 - O2 ANGL. DEV. = -4.2 DEGREES REMARK 500 2 C A 9 C5' - C4' - O4' ANGL. DEV. = 5.5 DEGREES REMARK 500 2 C A 9 N3 - C2 - O2 ANGL. DEV. = -4.4 DEGREES REMARK 500 2 U A 11 C3' - C2' - C1' ANGL. DEV. = 5.5 DEGREES REMARK 500 2 U A 12 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 2 C A 14 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 2 C A 14 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 2 A A 15 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 A A 15 N1 - C6 - N6 ANGL. DEV. = -4.5 DEGREES REMARK 500 2 C A 19 N3 - C2 - O2 ANGL. DEV. = -4.7 DEGREES REMARK 500 2 C A 20 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 2 A A 21 C4 - C5 - C6 ANGL. DEV. = -3.0 DEGREES REMARK 500 2 A A 21 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 A A 21 N1 - C6 - N6 ANGL. DEV. = -5.0 DEGREES REMARK 500 2 C A 23 N3 - C2 - O2 ANGL. DEV. = -4.9 DEGREES REMARK 500 3 A A 3 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 3 A A 3 C5 - C6 - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 3 A A 3 N1 - C6 - N6 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 365 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 U A 12 0.10 SIDE CHAIN REMARK 500 1 U A 13 0.08 SIDE CHAIN REMARK 500 1 A A 15 0.07 SIDE CHAIN REMARK 500 2 U A 12 0.08 SIDE CHAIN REMARK 500 3 U A 12 0.10 SIDE CHAIN REMARK 500 4 G A 1 0.07 SIDE CHAIN REMARK 500 4 G A 2 0.06 SIDE CHAIN REMARK 500 4 U A 12 0.10 SIDE CHAIN REMARK 500 4 U A 13 0.07 SIDE CHAIN REMARK 500 4 C A 14 0.07 SIDE CHAIN REMARK 500 4 A A 21 0.06 SIDE CHAIN REMARK 500 4 C A 24 0.07 SIDE CHAIN REMARK 500 5 G A 1 0.07 SIDE CHAIN REMARK 500 5 A A 4 0.08 SIDE CHAIN REMARK 500 5 U A 12 0.15 SIDE CHAIN REMARK 500 6 U A 12 0.09 SIDE CHAIN REMARK 500 6 U A 13 0.07 SIDE CHAIN REMARK 500 7 U A 12 0.08 SIDE CHAIN REMARK 500 7 U A 13 0.07 SIDE CHAIN REMARK 500 7 C A 22 0.06 SIDE CHAIN REMARK 500 8 U A 12 0.10 SIDE CHAIN REMARK 500 8 U A 13 0.07 SIDE CHAIN REMARK 500 8 C A 22 0.12 SIDE CHAIN REMARK 500 9 U A 12 0.15 SIDE CHAIN REMARK 500 9 C A 23 0.07 SIDE CHAIN REMARK 500 10 A A 4 0.09 SIDE CHAIN REMARK 500 10 U A 10 0.07 SIDE CHAIN REMARK 500 10 U A 12 0.09 SIDE CHAIN REMARK 500 10 U A 13 0.08 SIDE CHAIN REMARK 500 10 C A 24 0.07 SIDE CHAIN REMARK 500 11 G A 2 0.06 SIDE CHAIN REMARK 500 11 U A 12 0.09 SIDE CHAIN REMARK 500 11 C A 20 0.06 SIDE CHAIN REMARK 500 11 C A 22 0.08 SIDE CHAIN REMARK 500 12 C A 8 0.06 SIDE CHAIN REMARK 500 12 U A 12 0.09 SIDE CHAIN REMARK 500 12 U A 13 0.08 SIDE CHAIN REMARK 500 12 C A 23 0.08 SIDE CHAIN REMARK 500 13 U A 10 0.09 SIDE CHAIN REMARK 500 13 U A 12 0.11 SIDE CHAIN REMARK 500 13 C A 14 0.09 SIDE CHAIN REMARK 500 13 C A 24 0.07 SIDE CHAIN REMARK 500 14 U A 12 0.09 SIDE CHAIN REMARK 500 14 U A 13 0.06 SIDE CHAIN REMARK 500 14 C A 14 0.06 SIDE CHAIN REMARK 500 14 A A 15 0.07 SIDE CHAIN REMARK 500 14 C A 23 0.09 SIDE CHAIN REMARK 500 15 U A 12 0.10 SIDE CHAIN REMARK 500 15 U A 13 0.08 SIDE CHAIN REMARK 500 15 C A 14 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1KKS A 1 24 PDB 1KKS 1KKS 1 24 SEQRES 1 A 24 G G A A G G C C C U U U U SEQRES 2 A 24 C A G G G C C A C C C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 216 0 0 0 0 0 0 6 0 0 0 2 END