HEADER ANTIBIOTIC 04-DEC-01 1KJ5 TITLE SOLUTION STRUCTURE OF HUMAN BETA-DEFENSIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-DEFENSIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HBD-1, DEFENSIN, BETA 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEFENSIN, ANTIMICROBIAL PROTEIN, HUMAN BETA-DEFENSIN 1, KEYWDS 2 BETA-DEFENSIN, HBD1, ANTIBIOTIC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.J.SCHIBLI,H.N.HUNTER,V.ASEYEV,T.D.STARNER,J.M.WIENCEK, AUTHOR 2 P.B.MCCRAY JR.,B.F.TACK,H.J.VOGEL REVDAT 2 24-FEB-09 1KJ5 1 VERSN REVDAT 1 20-MAR-02 1KJ5 0 JRNL AUTH D.J.SCHIBLI,H.N.HUNTER,V.ASEYEV,T.D.STARNER, JRNL AUTH 2 J.M.WIENCEK,P.B.MCCRAY JR.,B.F.TACK,H.J.VOGEL JRNL TITL THE SOLUTION STRUCTURES OF THE HUMAN JRNL TITL 2 BETA-DEFENSINS LEAD TO A BETTER UNDERSTANDING OF JRNL TITL 3 THE POTENT BACTERICIDAL ACTIVITY OF HBD3 AGAINST JRNL TITL 4 STAPHYLOCOCCUS AUREUS. JRNL REF J.BIOL.CHEM. V. 277 8279 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11741980 JRNL DOI 10.1074/JBC.M108830200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0, ARIA 1.0 REMARK 3 AUTHORS : A.T.BRUNGER, P.D.ADAMS, G.M.CLORE, W.L.DELANO, REMARK 3 P.GROS, R.W.GROSSE-KUNSTLEVE, J.-S.JIANG, REMARK 3 J.KUSZEWSKI, M.NILGES, N.S.PANNU, R.J.READ, REMARK 3 L.M.RICE, T.SIMONSON, G.L.WARREN (CNS), J.LINGE, REMARK 3 S.O'DONOGHUE, M.NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KJ5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-01. REMARK 100 THE RCSB ID CODE IS RCSB015007. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.79 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM HBD1; 0.5 MM HBD1 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, 2D COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE, INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE 1.8, REMARK 210 NMRVIEW 4.1.3 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 4 86.08 -66.57 REMARK 500 1 CYS A 5 -74.32 -106.86 REMARK 500 1 PRO A 18 -78.94 -77.06 REMARK 500 1 ILE A 19 -172.10 -56.63 REMARK 500 1 PHE A 20 41.41 -77.94 REMARK 500 1 CYS A 27 -95.39 -83.87 REMARK 500 1 TYR A 28 -156.61 -61.51 REMARK 500 2 CYS A 5 -70.00 -98.30 REMARK 500 2 PRO A 18 -75.39 -91.01 REMARK 500 2 ILE A 19 -176.47 -56.02 REMARK 500 2 PHE A 20 32.15 -74.88 REMARK 500 2 THR A 21 -152.82 -78.86 REMARK 500 2 LYS A 22 94.07 -165.17 REMARK 500 2 CYS A 27 -85.48 -89.64 REMARK 500 2 TYR A 28 -158.23 -61.37 REMARK 500 3 ASN A 4 84.36 -66.11 REMARK 500 3 CYS A 5 -69.21 -102.26 REMARK 500 3 PRO A 18 -70.04 -81.49 REMARK 500 3 ILE A 19 -173.24 -56.59 REMARK 500 3 PHE A 20 25.91 -74.51 REMARK 500 3 THR A 21 -163.04 -76.74 REMARK 500 3 LYS A 22 108.23 -163.60 REMARK 500 3 CYS A 27 -91.30 -83.44 REMARK 500 3 TYR A 28 -156.18 -61.49 REMARK 500 4 ASN A 4 85.63 -68.91 REMARK 500 4 CYS A 5 -79.05 -109.53 REMARK 500 4 PRO A 18 -79.98 -90.80 REMARK 500 4 ILE A 19 -168.30 -56.60 REMARK 500 4 PHE A 20 33.97 -75.69 REMARK 500 4 CYS A 27 -78.06 -95.27 REMARK 500 4 TYR A 28 -164.65 -60.94 REMARK 500 5 PRO A 18 -83.30 -76.43 REMARK 500 5 ILE A 19 -171.18 -56.53 REMARK 500 5 PHE A 20 15.48 -69.96 REMARK 500 5 THR A 21 -172.71 -63.15 REMARK 500 5 CYS A 27 -78.47 -94.37 REMARK 500 5 TYR A 28 -176.92 -60.12 REMARK 500 6 CYS A 5 -72.43 -102.54 REMARK 500 6 PRO A 18 -73.34 -89.75 REMARK 500 6 ILE A 19 -173.45 -56.47 REMARK 500 6 PHE A 20 40.03 -78.10 REMARK 500 6 CYS A 27 -92.71 -93.18 REMARK 500 6 TYR A 28 -160.49 -61.24 REMARK 500 7 PRO A 18 -80.70 -79.05 REMARK 500 7 ILE A 19 -170.34 -56.56 REMARK 500 7 PHE A 20 35.56 -76.00 REMARK 500 7 GLN A 24 -66.98 -107.75 REMARK 500 7 CYS A 27 -84.52 -100.56 REMARK 500 7 TYR A 28 -160.52 -61.12 REMARK 500 8 HIS A 2 96.08 -60.24 REMARK 500 8 TYR A 3 172.66 -57.51 REMARK 500 8 PRO A 18 -72.50 -88.43 REMARK 500 8 ILE A 19 -176.01 -55.92 REMARK 500 8 PHE A 20 32.17 -76.62 REMARK 500 8 THR A 21 -154.30 -83.37 REMARK 500 8 CYS A 27 -88.39 -81.89 REMARK 500 8 TYR A 28 -153.41 -62.12 REMARK 500 9 CYS A 5 -65.21 -97.76 REMARK 500 9 PRO A 18 -72.96 -90.63 REMARK 500 9 ILE A 19 -170.97 -56.13 REMARK 500 9 PHE A 20 23.12 -71.03 REMARK 500 9 LYS A 22 117.31 -161.97 REMARK 500 9 CYS A 27 -91.29 -82.99 REMARK 500 9 TYR A 28 -168.02 -60.94 REMARK 500 10 CYS A 5 -63.54 -101.30 REMARK 500 10 PRO A 18 -72.46 -87.78 REMARK 500 10 ILE A 19 -169.85 -56.37 REMARK 500 10 PHE A 20 36.01 -76.64 REMARK 500 10 CYS A 27 -96.15 -84.35 REMARK 500 10 TYR A 28 -144.06 -61.65 REMARK 500 11 CYS A 5 -72.96 -100.80 REMARK 500 11 PRO A 18 -73.65 -89.38 REMARK 500 11 ILE A 19 -174.21 -56.47 REMARK 500 11 CYS A 27 -85.09 -71.85 REMARK 500 11 TYR A 28 -168.46 -60.84 REMARK 500 12 ASN A 4 91.58 -64.09 REMARK 500 12 CYS A 5 -75.87 -119.51 REMARK 500 12 PRO A 18 -80.37 -90.94 REMARK 500 12 ILE A 19 -172.38 -56.17 REMARK 500 12 PHE A 20 36.60 -75.84 REMARK 500 12 CYS A 27 -80.50 -85.97 REMARK 500 12 TYR A 28 -173.72 -60.27 REMARK 500 13 HIS A 2 109.25 -59.98 REMARK 500 13 CYS A 5 -76.29 -103.89 REMARK 500 13 PRO A 18 -81.59 -89.84 REMARK 500 13 ILE A 19 -173.95 -56.57 REMARK 500 13 PHE A 20 21.36 -71.62 REMARK 500 13 CYS A 27 -79.30 -81.90 REMARK 500 13 TYR A 28 -160.50 -61.28 REMARK 500 14 HIS A 2 109.92 -59.61 REMARK 500 14 CYS A 5 -67.43 -99.66 REMARK 500 14 PRO A 18 -71.87 -88.28 REMARK 500 14 ILE A 19 -168.76 -56.97 REMARK 500 14 PHE A 20 23.43 -73.43 REMARK 500 14 THR A 21 -169.45 -65.23 REMARK 500 14 CYS A 27 -88.40 -80.89 REMARK 500 14 TYR A 28 -161.69 -61.23 REMARK 500 15 ASN A 4 86.41 -64.50 REMARK 500 15 CYS A 5 -74.54 -116.82 REMARK 500 15 VAL A 6 -8.17 -55.65 REMARK 500 15 CYS A 17 112.52 -39.60 REMARK 500 15 PRO A 18 -72.60 -83.56 REMARK 500 15 ILE A 19 -172.80 -56.46 REMARK 500 15 PHE A 20 24.56 -72.92 REMARK 500 15 THR A 21 -162.99 -76.88 REMARK 500 15 CYS A 27 -87.59 -91.40 REMARK 500 15 TYR A 28 -164.01 -61.08 REMARK 500 16 CYS A 5 -78.54 -118.06 REMARK 500 16 PRO A 18 -75.42 -84.01 REMARK 500 16 ILE A 19 -172.48 -56.36 REMARK 500 16 PHE A 20 33.50 -75.34 REMARK 500 16 CYS A 27 -83.59 -93.75 REMARK 500 16 TYR A 28 -169.45 -60.85 REMARK 500 17 VAL A 6 -8.08 -55.68 REMARK 500 17 PRO A 18 -77.14 -86.98 REMARK 500 17 ILE A 19 -171.74 -56.54 REMARK 500 17 CYS A 27 -82.47 -88.08 REMARK 500 17 TYR A 28 -165.95 -61.13 REMARK 500 18 HIS A 2 104.35 -59.89 REMARK 500 18 CYS A 5 -65.01 -109.21 REMARK 500 18 PRO A 18 -83.92 -79.30 REMARK 500 18 ILE A 19 -176.07 -56.17 REMARK 500 18 PHE A 20 35.19 -76.30 REMARK 500 18 THR A 21 -152.46 -75.90 REMARK 500 18 LYS A 22 108.59 -160.45 REMARK 500 18 CYS A 27 -78.74 -100.67 REMARK 500 18 TYR A 28 -174.69 -60.30 REMARK 500 19 CYS A 5 -74.58 -114.93 REMARK 500 19 PRO A 18 -72.67 -90.05 REMARK 500 19 ILE A 19 -172.92 -56.02 REMARK 500 19 PHE A 20 33.13 -74.47 REMARK 500 19 THR A 21 -150.78 -81.17 REMARK 500 19 LYS A 22 108.71 -167.11 REMARK 500 19 GLN A 24 -69.93 -108.94 REMARK 500 19 CYS A 27 -92.80 -94.15 REMARK 500 19 TYR A 28 -156.29 -61.40 REMARK 500 20 HIS A 2 94.91 -60.91 REMARK 500 20 CYS A 5 -82.42 -130.34 REMARK 500 20 PRO A 18 -78.62 -89.18 REMARK 500 20 ILE A 19 -171.93 -56.45 REMARK 500 20 PHE A 20 19.80 -69.77 REMARK 500 20 THR A 21 -159.63 -73.25 REMARK 500 20 LYS A 22 117.82 -160.63 REMARK 500 20 CYS A 27 -81.88 -86.44 REMARK 500 20 TYR A 28 -165.27 -61.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KJ6 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF HUMAN BETA-DEFENSIN 3 DBREF 1KJ5 A 1 36 UNP P60022 BD01_HUMAN 33 68 SEQRES 1 A 36 ASP HIS TYR ASN CYS VAL SER SER GLY GLY GLN CYS LEU SEQRES 2 A 36 TYR SER ALA CYS PRO ILE PHE THR LYS ILE GLN GLY THR SEQRES 3 A 36 CYS TYR ARG GLY LYS ALA LYS CYS CYS LYS SHEET 1 A 3 GLN A 11 LEU A 13 0 SHEET 2 A 3 LYS A 33 CYS A 35 -1 O LYS A 33 N LEU A 13 SHEET 3 A 3 ILE A 23 THR A 26 -1 N GLY A 25 O CYS A 34 SSBOND 1 CYS A 5 CYS A 34 1555 1555 2.03 SSBOND 2 CYS A 12 CYS A 27 1555 1555 2.03 SSBOND 3 CYS A 17 CYS A 35 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 219 0 0 0 3 0 0 6 0 0 0 3 END