HEADER PLASMINOGEN ACTIVATION 15-JUL-93 1KDU TITLE SEQUENTIAL 1H NMR ASSIGNMENTS AND SECONDARY STRUCTURE OF THE KRINGLE TITLE 2 DOMAIN FROM UROKINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMINOGEN ACTIVATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS PLASMINOGEN ACTIVATION EXPDTA SOLUTION NMR AUTHOR X.LI,A.M.BOKMAN,M.LLINAS,R.A.G.SMITH,C.M.DOBSON REVDAT 4 01-AUG-12 1KDU 1 JRNL VERSN REVDAT 3 24-FEB-09 1KDU 1 VERSN REVDAT 2 01-APR-03 1KDU 1 JRNL REVDAT 1 31-OCT-93 1KDU 0 JRNL AUTH X.LI,A.M.BOKMAN,M.LLINAS,R.A.SMITH,C.M.DOBSON JRNL TITL SOLUTION STRUCTURE OF THE KRINGLE DOMAIN FROM UROKINASE-TYPE JRNL TITL 2 PLASMINOGEN ACTIVATOR. JRNL REF J.MOL.BIOL. V. 235 1548 1994 JRNL REFN ISSN 0022-2836 JRNL PMID 8107091 JRNL DOI 10.1006/JMBI.1994.1106 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH X.LI,A.M.BOKMAN,M.LLINAS,R.A.G.SMITH,C.M.DOBSON REMARK 1 TITL SOLUTION STRUCTURE OF THE KRINGLE DOMAIN FROM THE REMARK 1 TITL 2 UROKINASE-TYPE PLASMINOGEN ACTIVATOR REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 25 CG TRP A 25 CD2 -0.115 REMARK 500 HIS A 40 CG HIS A 40 ND1 -0.111 REMARK 500 HIS A 48A NE2 HIS A 48A CD2 -0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 25 CA - CB - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 TRP A 25 CD1 - NE1 - CE2 ANGL. DEV. = 7.4 DEGREES REMARK 500 TRP A 25 NE1 - CE2 - CZ2 ANGL. DEV. = 11.0 DEGREES REMARK 500 TRP A 25 NE1 - CE2 - CD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 TRP A 25 CG - CD2 - CE3 ANGL. DEV. = -8.2 DEGREES REMARK 500 HIS A 40 N - CA - CB ANGL. DEV. = -12.5 DEGREES REMARK 500 TRP A 62 CD1 - CG - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 TRP A 62 CG - CD1 - NE1 ANGL. DEV. = -7.0 DEGREES REMARK 500 TRP A 62 CD1 - NE1 - CE2 ANGL. DEV. = 6.9 DEGREES REMARK 500 TRP A 62 NE1 - CE2 - CZ2 ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 1 -55.14 -120.45 REMARK 500 HIS A 7 -80.43 -78.25 REMARK 500 ARG A 10 86.59 24.01 REMARK 500 LYS A 12 69.60 -106.37 REMARK 500 GLN A 34 -148.73 -61.58 REMARK 500 LYS A 48 27.66 47.71 REMARK 500 HIS A 48A -167.76 -79.72 REMARK 500 ARG A 52 -157.70 -133.70 REMARK 500 ASN A 53 47.02 -104.02 REMARK 500 PRO A 54 -7.27 -55.62 REMARK 500 ASP A 55 -75.12 -128.09 REMARK 500 ASN A 56 47.91 151.08 REMARK 500 MET A 76 34.75 -78.12 REMARK 500 VAL A 77 -158.11 -79.43 REMARK 500 CYS A 80 75.46 62.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 10 0.13 SIDE CHAIN REMARK 500 ARG A 20 0.31 SIDE CHAIN REMARK 500 ARG A 41 0.31 SIDE CHAIN REMARK 500 ARG A 52 0.16 SIDE CHAIN REMARK 500 ARG A 57 0.18 SIDE CHAIN REMARK 500 ARG A 58 0.20 SIDE CHAIN REMARK 500 ARG A 60 0.29 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: BD1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: BD2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL DBREF 1KDU A -1 82 UNP P00749 UROK_HUMAN 69 153 SEQRES 1 A 85 THR CYS TYR GLU GLY ASN GLY HIS PHE TYR ARG GLY LYS SEQRES 2 A 85 ALA SER THR ASP THR MET GLY ARG PRO CYS LEU PRO TRP SEQRES 3 A 85 ASN SER ALA THR VAL LEU GLN GLN THR TYR HIS ALA HIS SEQRES 4 A 85 ARG SER ASP ALA LEU GLN LEU GLY LEU GLY LYS HIS ASN SEQRES 5 A 85 TYR CYS ARG ASN PRO ASP ASN ARG ARG ARG PRO TRP CYS SEQRES 6 A 85 TYR VAL GLN VAL GLY LEU LYS PRO LEU VAL GLN GLU CYS SEQRES 7 A 85 MET VAL HIS ASP CYS ALA ASP HELIX 1 H1 ALA A 28 GLN A 33 11/5, DISORDERED 5 HELIX 2 H2 SER A 42 LEU A 44C 1DISORDERED 6 SHEET 1 B1 2 THR A 15 ASP A 16 0 SHEET 2 B1 2 ARG A 20 CYS A 22 -1 O ARG A 20 N ASP A 16 SHEET 1 B2 2 PRO A 24 TRP A 25 0 SHEET 2 B2 2 HIS A 48A ASN A 49 -1 O HIS A 48A N TRP A 25 SHEET 1 B3 2 TRP A 62 GLN A 66 0 SHEET 2 B3 2 PRO A 70 GLU A 74 -1 O GLN A 73 N CYS A 63 SSBOND 1 CYS A 1 CYS A 80 1555 1555 2.02 SSBOND 2 CYS A 22 CYS A 63 1555 1555 2.02 SSBOND 3 CYS A 51 CYS A 75 1555 1555 2.02 SITE 1 BD1 3 ARG A 57 ARG A 58 ARG A 60 SITE 1 BD2 2 HIS A 37 HIS A 40 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 181 0 0 2 6 0 2 6 0 0 0 7 END