HEADER HYDROLASE 31-OCT-01 1KA1 TITLE THE PAPASE HAL2P COMPLEXED WITH CALCIUM AND MAGNESIUM IONS TITLE 2 AND REACTION SUBSTRATE: PAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOTOLERANCE PROTEIN HAL2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HAL2P, 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE, COMPND 5 PHOSPHOADENYLATE 3'-NUCLEOTIDASE, 3'- COMPND 6 PHOSPHOADENYLYLSULFATE 3'-PHOSPHATASE; COMPND 7 EC: 3.1.3.7; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: HAL2; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: RS1051; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: MULTI-COPY PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PRS-421-HAL2 KEYWDS NUCLEOTIDASE, SALT TOLERANCE, INOSITOL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PATEL,A.ALBERT,T.L.BLUNDELL REVDAT 3 24-FEB-09 1KA1 1 VERSN REVDAT 2 05-APR-05 1KA1 1 JRNL REMARK REVDAT 1 07-NOV-01 1KA1 0 JRNL AUTH S.PATEL,M.MARTINEZ-RIPOLL,T.L.BLUNDELL,A.ALBERT JRNL TITL STRUCTURAL ENZYMOLOGY OF JRNL TITL 2 LI(+)-SENSITIVE/MG(2+)-DEPENDENT PHOSPHATASES. JRNL REF J.MOL.BIOL. V. 320 1087 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12126627 JRNL DOI 10.1016/S0022-2836(02)00564-8 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 73179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3654 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4201 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 227 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2719 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 448 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.072 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2797 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2504 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3789 ; 1.723 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5838 ; 1.253 ; 2.995 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 353 ; 6.181 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 494 ;15.123 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 430 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3124 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 547 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 596 ; 0.269 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2337 ; 0.225 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 6 ; 0.383 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 313 ; 0.267 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 3 ; 0.296 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.087 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.259 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.274 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.254 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1748 ; 2.399 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2807 ; 3.214 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1049 ; 4.396 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 982 ; 6.143 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2797 ; 2.631 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 2 ; 6.221 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2747 ; 5.360 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 1KA1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-01. REMARK 100 THE RCSB ID CODE IS RCSB014747. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8700 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73179 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1QGX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG5000 MME, 0.1 M SODIUM REMARK 280 ACETATE, 5 MM BETA-MERCAPTOETHANOL, 0.1 M MES. (CRYSTALS WERE REMARK 280 SOAKED IN MOTHER LIQUOR CONTAINING 0.5 M CALCIUM CHLORIDE FOR REMARK 280 5 HOURS.) , PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.48400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 356 REMARK 465 ALA A 357 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 32 CB CG CD CE NZ REMARK 470 ASP A 33 CB CG OD1 OD2 REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 LYS A 229 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 768 O HOH A 1031 1.70 REMARK 500 OH TYR A 183 O HOH A 1035 1.87 REMARK 500 O HOH A 779 O HOH A 1029 1.92 REMARK 500 O HOH A 797 O HOH A 1048 1.97 REMARK 500 O HOH A 986 O HOH A 989 2.00 REMARK 500 O HOH A 997 O HOH A 1035 2.02 REMARK 500 N LEU A 3 O HOH A 1026 2.05 REMARK 500 O HOH A 667 O HOH A 918 2.06 REMARK 500 O HOH A 755 O HOH A 989 2.07 REMARK 500 CE LYS A 329 O HOH A 854 2.09 REMARK 500 O HOH A 759 O HOH A 821 2.11 REMARK 500 O HOH A 657 O HOH A 1019 2.11 REMARK 500 O HOH A 916 O HOH A 1002 2.13 REMARK 500 NZ LYS A 258 O HOH A 910 2.14 REMARK 500 O HOH A 777 O HOH A 1032 2.14 REMARK 500 O HOH A 982 O HOH A 1023 2.16 REMARK 500 CG ARG A 5 O HOH A 933 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 744 O HOH A 1031 2555 2.02 REMARK 500 O HOH A 926 O HOH A 1033 2544 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 16 CE LYS A 16 NZ 0.177 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 5 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 104 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 32 43.74 -85.06 REMARK 500 GLU A 154 -142.12 -113.45 REMARK 500 PHE A 194 41.72 -154.99 REMARK 500 ASP A 213 -82.93 -92.24 REMARK 500 SER A 264 171.31 84.89 REMARK 500 HIS A 295 -13.34 -141.48 REMARK 500 MET A 313 -54.05 -128.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1002 DISTANCE = 6.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 613 O REMARK 620 2 GLU A 72 OE1 94.9 REMARK 620 3 ASP A 142 OD1 169.3 89.5 REMARK 620 4 HOH A 603 O 84.0 86.5 86.5 REMARK 620 5 ASP A 142 OD2 142.9 87.9 46.9 133.1 REMARK 620 6 A3P A 601 O1P 78.9 94.2 110.6 162.9 64.0 REMARK 620 7 ILE A 144 O 94.4 163.9 79.3 81.4 92.6 100.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 142 OD2 REMARK 620 2 ASP A 294 OD1 95.6 REMARK 620 3 A3P A 601 O1P 82.5 160.3 REMARK 620 4 HOH A 639 O 100.5 82.5 78.6 REMARK 620 5 A3P A 601 O3' 132.1 126.3 65.3 106.3 REMARK 620 6 ASP A 145 OD1 86.7 90.7 108.6 170.5 72.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A3P A 601 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QGX RELATED DB: PDB REMARK 900 1QGX IS COMPLEXED WITH TWO MAGNESIUM IONS AND A LITHIUM ION REMARK 900 AND REACTION PRODUCTS AMP AND INORGANIC PHOSPHATE REMARK 900 RELATED ID: 1K9Y RELATED DB: PDB REMARK 900 THE PAPASE HAL2P COMPLEXED WITH MAGNESIUM IONS AND REACTION REMARK 900 PRODUCTS: AMP AND INORGANIC PHOSPHATE REMARK 900 RELATED ID: 1K9Z RELATED DB: PDB REMARK 900 THE PAPASE HAL2P COMPLEXED WITH ZINC IONS REMARK 900 RELATED ID: 1KA0 RELATED DB: PDB REMARK 900 THE PAPASE HAL2P COMPLEXED WITH A SODIUM ION AND THE REMARK 900 REACTION PRODUCT AMP DBREF 1KA1 A 1 357 UNP P32179 HAL2_YEAST 1 357 SEQRES 1 A 357 MET ALA LEU GLU ARG GLU LEU LEU VAL ALA THR GLN ALA SEQRES 2 A 357 VAL ARG LYS ALA SER LEU LEU THR LYS ARG ILE GLN SER SEQRES 3 A 357 GLU VAL ILE SER HIS LYS ASP SER THR THR ILE THR LYS SEQRES 4 A 357 ASN ASP ASN SER PRO VAL THR THR GLY ASP TYR ALA ALA SEQRES 5 A 357 GLN THR ILE ILE ILE ASN ALA ILE LYS SER ASN PHE PRO SEQRES 6 A 357 ASP ASP LYS VAL VAL GLY GLU GLU SER SER SER GLY LEU SEQRES 7 A 357 SER ASP ALA PHE VAL SER GLY ILE LEU ASN GLU ILE LYS SEQRES 8 A 357 ALA ASN ASP GLU VAL TYR ASN LYS ASN TYR LYS LYS ASP SEQRES 9 A 357 ASP PHE LEU PHE THR ASN ASP GLN PHE PRO LEU LYS SER SEQRES 10 A 357 LEU GLU ASP VAL ARG GLN ILE ILE ASP PHE GLY ASN TYR SEQRES 11 A 357 GLU GLY GLY ARG LYS GLY ARG PHE TRP CYS LEU ASP PRO SEQRES 12 A 357 ILE ASP GLY THR LYS GLY PHE LEU ARG GLY GLU GLN PHE SEQRES 13 A 357 ALA VAL CYS LEU ALA LEU ILE VAL ASP GLY VAL VAL GLN SEQRES 14 A 357 LEU GLY CYS ILE GLY CYS PRO ASN LEU VAL LEU SER SER SEQRES 15 A 357 TYR GLY ALA GLN ASP LEU LYS GLY HIS GLU SER PHE GLY SEQRES 16 A 357 TYR ILE PHE ARG ALA VAL ARG GLY LEU GLY ALA PHE TYR SEQRES 17 A 357 SER PRO SER SER ASP ALA GLU SER TRP THR LYS ILE HIS SEQRES 18 A 357 VAL ARG HIS LEU LYS ASP THR LYS ASP MET ILE THR LEU SEQRES 19 A 357 GLU GLY VAL GLU LYS GLY HIS SER SER HIS ASP GLU GLN SEQRES 20 A 357 THR ALA ILE LYS ASN LYS LEU ASN ILE SER LYS SER LEU SEQRES 21 A 357 HIS LEU ASP SER GLN ALA LYS TYR CYS LEU LEU ALA LEU SEQRES 22 A 357 GLY LEU ALA ASP VAL TYR LEU ARG LEU PRO ILE LYS LEU SEQRES 23 A 357 SER TYR GLN GLU LYS ILE TRP ASP HIS ALA ALA GLY ASN SEQRES 24 A 357 VAL ILE VAL HIS GLU ALA GLY GLY ILE HIS THR ASP ALA SEQRES 25 A 357 MET GLU ASP VAL PRO LEU ASP PHE GLY ASN GLY ARG THR SEQRES 26 A 357 LEU ALA THR LYS GLY VAL ILE ALA SER SER GLY PRO ARG SEQRES 27 A 357 GLU LEU HIS ASP LEU VAL VAL SER THR SER CYS ASP VAL SEQRES 28 A 357 ILE GLN SER ARG ASN ALA HET CA A 401 1 HET MG A 501 1 HET A3P A 601 27 HET BME A 602 4 HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM A3P ADENOSINE-3'-5'-DIPHOSPHATE HETNAM BME BETA-MERCAPTOETHANOL FORMUL 2 CA CA 2+ FORMUL 3 MG MG 2+ FORMUL 4 A3P C10 H15 N5 O10 P2 FORMUL 5 BME C2 H6 O S FORMUL 6 HOH *446(H2 O) HELIX 1 1 LEU A 3 HIS A 31 1 29 HELIX 2 2 THR A 47 PHE A 64 1 18 HELIX 3 3 SER A 79 TYR A 101 1 23 HELIX 4 4 SER A 117 PHE A 127 1 11 HELIX 5 5 GLY A 146 ARG A 152 1 7 HELIX 6 6 VAL A 179 GLY A 184 5 6 HELIX 7 7 ASP A 227 ASP A 230 5 4 HELIX 8 8 SER A 243 LEU A 254 1 12 HELIX 9 9 GLN A 265 GLY A 274 1 10 HELIX 10 10 LYS A 291 ASP A 294 5 4 HELIX 11 11 HIS A 295 ALA A 305 1 11 HELIX 12 12 PRO A 337 SER A 354 1 18 SHEET 1 A 2 THR A 36 THR A 38 0 SHEET 2 A 2 PRO A 44 THR A 46 -1 O VAL A 45 N ILE A 37 SHEET 1 B 7 VAL A 69 GLY A 71 0 SHEET 2 B 7 ARG A 137 ASP A 145 1 O TRP A 139 N VAL A 70 SHEET 3 B 7 ALA A 157 VAL A 164 -1 O ALA A 157 N ASP A 145 SHEET 4 B 7 VAL A 167 CYS A 175 -1 O GLY A 174 N VAL A 158 SHEET 5 B 7 TYR A 196 VAL A 201 -1 O TYR A 196 N CYS A 175 SHEET 6 B 7 ALA A 206 PRO A 210 -1 O SER A 209 N ILE A 197 SHEET 7 B 7 THR A 218 LYS A 219 -1 O THR A 218 N TYR A 208 SHEET 1 C 5 LYS A 258 HIS A 261 0 SHEET 2 C 5 ILE A 232 GLU A 235 1 N GLU A 235 O LEU A 260 SHEET 3 C 5 VAL A 278 ARG A 281 1 O VAL A 278 N LEU A 234 SHEET 4 C 5 VAL A 331 SER A 334 -1 O ALA A 333 N TYR A 279 SHEET 5 C 5 ILE A 308 THR A 310 -1 N THR A 310 O ILE A 332 LINK S2 BME A 602 SG CYS A 349 1555 1555 1.82 LINK CA CA A 401 O HOH A 613 1555 1555 2.37 LINK CA CA A 401 OE1 GLU A 72 1555 1555 2.27 LINK CA CA A 401 OD1 ASP A 142 1555 1555 2.30 LINK CA CA A 401 O HOH A 603 1555 1555 2.40 LINK CA CA A 401 OD2 ASP A 142 1555 1555 2.94 LINK CA CA A 401 O1P A3P A 601 1555 1555 2.35 LINK CA CA A 401 O ILE A 144 1555 1555 2.34 LINK MG MG A 501 OD2 ASP A 142 1555 1555 2.32 LINK MG MG A 501 OD1 ASP A 294 1555 1555 2.11 LINK MG MG A 501 O1P A3P A 601 1555 1555 1.98 LINK MG MG A 501 O HOH A 639 1555 1555 2.66 LINK MG MG A 501 O3' A3P A 601 1555 1555 2.26 LINK MG MG A 501 OD1 ASP A 145 1555 1555 2.20 CISPEP 1 GLY A 336 PRO A 337 0 5.83 SITE 1 AC1 6 GLU A 72 ASP A 142 ILE A 144 A3P A 601 SITE 2 AC1 6 HOH A 603 HOH A 613 SITE 1 AC2 5 ASP A 142 ASP A 145 ASP A 294 A3P A 601 SITE 2 AC2 5 HOH A 639 SITE 1 AC3 27 GLU A 72 ASP A 142 ILE A 144 ASP A 145 SITE 2 AC3 27 GLY A 146 THR A 147 GLY A 240 HIS A 241 SITE 3 AC3 27 ASP A 263 SER A 264 LYS A 267 ARG A 281 SITE 4 AC3 27 TYR A 288 ASP A 294 CA A 401 MG A 501 SITE 5 AC3 27 HOH A 606 HOH A 613 HOH A 627 HOH A 632 SITE 6 AC3 27 HOH A 639 HOH A 640 HOH A 675 HOH A 797 SITE 7 AC3 27 HOH A 815 HOH A 998 HOH A1027 SITE 1 AC4 6 MET A 313 GLU A 314 CYS A 349 GLN A 353 SITE 2 AC4 6 HOH A 807 HOH A1005 CRYST1 54.875 44.968 72.110 90.00 110.72 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018223 0.000000 0.006895 0.00000 SCALE2 0.000000 0.022238 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014827 0.00000 MASTER 421 0 4 12 14 0 13 6 0 0 0 28 END