HEADER HYDROLASE 31-OCT-01 1K9Z TITLE THE PAPASE HAL2P COMPLEXED WITH ZINC IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOTOLERANCE PROTEIN HAL2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HAL2P, 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE, COMPND 5 PHOSPHOADENYLATE 3'-NUCLEOTIDASE, 3'- COMPND 6 PHOSPHOADENYLYLSULFATE 3'-PHOSPHATASE; COMPND 7 EC: 3.1.3.7; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: HAL2; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: RS1051; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: MULTI-COPY PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PRS-421-HAL2 KEYWDS NUCLEOTIDASE, SALT TOLERANCE, INOSITOL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PATEL,A.ALBERT,T.L.BLUNDELL REVDAT 2 24-FEB-09 1K9Z 1 VERSN REVDAT 1 07-NOV-01 1K9Z 0 JRNL AUTH S.PATEL,A.ALBERT,T.L.BLUNDELL JRNL TITL HAL2P: ION SELECTIVITY AND IMPLICATIONS ON JRNL TITL 2 INHIBITION MECHANISM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 50493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2583 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2725 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 309 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : 0.54000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.873 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1K9Z COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-01. REMARK 100 THE RCSB ID CODE IS RCSB014745. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : SI 111 & SI 220 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50496 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 34.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1QGX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG5000 MME, 0.1 M SODIUM REMARK 280 ACETATE, 5 MM BETA-MERCAPTOETHANOL, 0.1 M MES. (CRYSTALS WERE REMARK 280 SOAKED IN MOTHER LIQUOR CONTAINING 0.5 M ZINC CHLORIDE FOR 5 REMARK 280 HOURS.) , PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.67950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 356 REMARK 465 ALA A 357 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 32 CB CG CD CE NZ REMARK 470 ASP A 33 CB CG OD1 OD2 REMARK 470 LYS A 116 CE NZ REMARK 470 LYS A 135 CD CE NZ REMARK 470 LYS A 226 CB CG CD CE NZ REMARK 470 ASP A 227 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 31 O HOH A 706 1.99 REMARK 500 OE1 GLU A 192 O HOH A 521 2.05 REMARK 500 O HIS A 241 O HOH A 519 2.13 REMARK 500 OD2 ASP A 350 O HOH A 520 2.18 REMARK 500 N ALA A 2 OE2 GLU A 4 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 104 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 152 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 152 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LYS A 291 CD - CE - NZ ANGL. DEV. = -16.8 DEGREES REMARK 500 LYS A 291 CD - CE - NZ ANGL. DEV. = -16.8 DEGREES REMARK 500 ARG A 324 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 324 NE - CZ - NH2 ANGL. DEV. = 5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 3 30.23 86.31 REMARK 500 GLU A 154 -154.07 -111.78 REMARK 500 PHE A 194 42.59 -153.96 REMARK 500 ASP A 213 -82.69 -91.32 REMARK 500 SER A 264 171.78 87.79 REMARK 500 GLN A 265 1.00 -69.28 REMARK 500 MET A 313 -50.96 -129.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 661 DISTANCE = 5.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 502 O REMARK 620 2 HOH A 517 O 89.4 REMARK 620 3 HOH A 518 O 97.1 173.5 REMARK 620 4 HOH A 793 O 82.7 86.9 93.5 REMARK 620 5 HOH A 503 O 174.6 85.6 87.9 95.0 REMARK 620 6 GLU A 72 OE2 86.3 78.9 101.8 162.1 94.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 72 OE1 REMARK 620 2 ASP A 142 OD1 87.2 REMARK 620 3 ILE A 144 O 169.1 84.4 REMARK 620 4 HOH A 794 O 88.5 101.8 86.4 REMARK 620 5 HOH A 518 O 97.8 155.1 92.8 102.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 803 O REMARK 620 2 ASP A 142 OD2 169.6 REMARK 620 3 ASP A 294 OD1 89.2 99.6 REMARK 620 4 HOH A 505 O 93.4 84.4 71.2 REMARK 620 5 ASP A 145 OD1 73.3 108.8 107.2 166.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 89 OE2 REMARK 620 2 HOH A 653 O 126.9 REMARK 620 3 GLU A 27 OE2 77.6 153.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 224 NE2 REMARK 620 2 HOH A 560 O 96.8 REMARK 620 3 HOH A 668 O 116.0 87.4 REMARK 620 4 HOH A 665 O 91.4 160.6 73.2 REMARK 620 5 HIS A 221 NE2 117.4 103.7 123.3 87.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 235 OE2 REMARK 620 2 HIS A 261 NE2 89.7 REMARK 620 3 HOH A 613 O 79.5 162.7 REMARK 620 4 HOH A 720 O 132.3 104.8 73.7 REMARK 620 5 HIS A 244 NE2 103.1 99.5 96.2 118.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 191 NE2 REMARK 620 2 HOH A 729 O 109.9 REMARK 620 3 HOH A 620 O 137.0 64.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 408 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 131 OE1 REMARK 620 2 HOH A 620 O 112.9 REMARK 620 3 HOH A 522 O 96.9 105.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 409 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 315 OD2 REMARK 620 2 HOH A 786 O 113.5 REMARK 620 3 ASP A 342 OD1 75.0 105.2 REMARK 620 4 HOH A 748 O 134.7 108.6 109.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 404 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 405 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 406 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 407 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 408 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 409 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QGX RELATED DB: PDB REMARK 900 1QGX IS COMPLEXED WITH TWO MAGNESIUM IONS AND A LITHIUM ION REMARK 900 AND REACTION PRODUCTS AMP AND INORGANIC PHOSPHATE REMARK 900 RELATED ID: 1K9Y RELATED DB: PDB REMARK 900 THE PAPASE HAL2P COMPLEXED WITH MAGNESIUM IONS AND REACTION REMARK 900 PRODUCTS: AMP AND INORGANIC PHOSPHATE REMARK 900 RELATED ID: 1KA0 RELATED DB: PDB REMARK 900 THE PAPASE HAL2P COMPLEXED WITH A SODIUM ION AND THE REMARK 900 REACTION PRODUCT AMP REMARK 900 RELATED ID: 1KA1 RELATED DB: PDB REMARK 900 THE PAPASE HAL2P COMPLEXED WITH CALCIUM AND MAGNESIUM IONS REMARK 900 AND REACTION SUBSTRATE: PAP DBREF 1K9Z A 1 357 UNP P32179 HAL2_YEAST 1 357 SEQRES 1 A 357 MET ALA LEU GLU ARG GLU LEU LEU VAL ALA THR GLN ALA SEQRES 2 A 357 VAL ARG LYS ALA SER LEU LEU THR LYS ARG ILE GLN SER SEQRES 3 A 357 GLU VAL ILE SER HIS LYS ASP SER THR THR ILE THR LYS SEQRES 4 A 357 ASN ASP ASN SER PRO VAL THR THR GLY ASP TYR ALA ALA SEQRES 5 A 357 GLN THR ILE ILE ILE ASN ALA ILE LYS SER ASN PHE PRO SEQRES 6 A 357 ASP ASP LYS VAL VAL GLY GLU GLU SER SER SER GLY LEU SEQRES 7 A 357 SER ASP ALA PHE VAL SER GLY ILE LEU ASN GLU ILE LYS SEQRES 8 A 357 ALA ASN ASP GLU VAL TYR ASN LYS ASN TYR LYS LYS ASP SEQRES 9 A 357 ASP PHE LEU PHE THR ASN ASP GLN PHE PRO LEU LYS SER SEQRES 10 A 357 LEU GLU ASP VAL ARG GLN ILE ILE ASP PHE GLY ASN TYR SEQRES 11 A 357 GLU GLY GLY ARG LYS GLY ARG PHE TRP CYS LEU ASP PRO SEQRES 12 A 357 ILE ASP GLY THR LYS GLY PHE LEU ARG GLY GLU GLN PHE SEQRES 13 A 357 ALA VAL CYS LEU ALA LEU ILE VAL ASP GLY VAL VAL GLN SEQRES 14 A 357 LEU GLY CYS ILE GLY CYS PRO ASN LEU VAL LEU SER SER SEQRES 15 A 357 TYR GLY ALA GLN ASP LEU LYS GLY HIS GLU SER PHE GLY SEQRES 16 A 357 TYR ILE PHE ARG ALA VAL ARG GLY LEU GLY ALA PHE TYR SEQRES 17 A 357 SER PRO SER SER ASP ALA GLU SER TRP THR LYS ILE HIS SEQRES 18 A 357 VAL ARG HIS LEU LYS ASP THR LYS ASP MET ILE THR LEU SEQRES 19 A 357 GLU GLY VAL GLU LYS GLY HIS SER SER HIS ASP GLU GLN SEQRES 20 A 357 THR ALA ILE LYS ASN LYS LEU ASN ILE SER LYS SER LEU SEQRES 21 A 357 HIS LEU ASP SER GLN ALA LYS TYR CYS LEU LEU ALA LEU SEQRES 22 A 357 GLY LEU ALA ASP VAL TYR LEU ARG LEU PRO ILE LYS LEU SEQRES 23 A 357 SER TYR GLN GLU LYS ILE TRP ASP HIS ALA ALA GLY ASN SEQRES 24 A 357 VAL ILE VAL HIS GLU ALA GLY GLY ILE HIS THR ASP ALA SEQRES 25 A 357 MET GLU ASP VAL PRO LEU ASP PHE GLY ASN GLY ARG THR SEQRES 26 A 357 LEU ALA THR LYS GLY VAL ILE ALA SER SER GLY PRO ARG SEQRES 27 A 357 GLU LEU HIS ASP LEU VAL VAL SER THR SER CYS ASP VAL SEQRES 28 A 357 ILE GLN SER ARG ASN ALA HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN A 405 1 HET ZN A 406 1 HET ZN A 407 1 HET ZN A 408 1 HET ZN A 409 1 HET BME A 501 4 HETNAM ZN ZINC ION HETNAM BME BETA-MERCAPTOETHANOL FORMUL 2 ZN 9(ZN 2+) FORMUL 11 BME C2 H6 O S FORMUL 12 HOH *302(H2 O) HELIX 1 1 LEU A 3 HIS A 31 1 29 HELIX 2 2 HIS A 31 THR A 35 1 5 HELIX 3 3 THR A 47 PHE A 64 1 18 HELIX 4 4 SER A 79 TYR A 101 1 23 HELIX 5 5 SER A 117 PHE A 127 1 11 HELIX 6 6 GLY A 146 ARG A 152 1 7 HELIX 7 7 VAL A 179 GLY A 184 5 6 HELIX 8 8 ASP A 227 ASP A 230 5 4 HELIX 9 9 SER A 243 ASN A 255 1 13 HELIX 10 10 GLN A 265 GLY A 274 1 10 HELIX 11 11 LYS A 291 ASP A 294 5 4 HELIX 12 12 HIS A 295 ALA A 305 1 11 HELIX 13 13 PRO A 337 SER A 354 1 18 SHEET 1 A 2 THR A 36 THR A 38 0 SHEET 2 A 2 PRO A 44 THR A 46 -1 O VAL A 45 N ILE A 37 SHEET 1 B 7 VAL A 69 GLY A 71 0 SHEET 2 B 7 ARG A 137 ASP A 145 1 O TRP A 139 N VAL A 70 SHEET 3 B 7 ALA A 157 VAL A 164 -1 O ALA A 157 N ASP A 145 SHEET 4 B 7 VAL A 167 CYS A 175 -1 O GLN A 169 N LEU A 162 SHEET 5 B 7 TYR A 196 VAL A 201 -1 O TYR A 196 N CYS A 175 SHEET 6 B 7 GLY A 205 PRO A 210 -1 O SER A 209 N ILE A 197 SHEET 7 B 7 THR A 218 ILE A 220 -1 O THR A 218 N TYR A 208 SHEET 1 C 5 LYS A 258 HIS A 261 0 SHEET 2 C 5 ILE A 232 GLU A 235 1 N THR A 233 O LYS A 258 SHEET 3 C 5 VAL A 278 ARG A 281 1 O VAL A 278 N LEU A 234 SHEET 4 C 5 VAL A 331 SER A 334 -1 O ALA A 333 N TYR A 279 SHEET 5 C 5 ILE A 308 THR A 310 -1 N THR A 310 O ILE A 332 LINK S2 BME A 501 SG CYS A 349 1555 1555 1.97 LINK ZN ZN A 401 O HOH A 502 1555 1555 2.22 LINK ZN ZN A 401 O HOH A 517 1555 1555 2.10 LINK ZN ZN A 401 O HOH A 518 1555 1555 1.98 LINK ZN ZN A 401 O HOH A 793 1555 1555 2.15 LINK ZN ZN A 401 O HOH A 503 1555 1555 2.08 LINK ZN ZN A 401 OE2 GLU A 72 1555 1555 1.96 LINK ZN ZN A 402 OE1 GLU A 72 1555 1555 2.05 LINK ZN ZN A 402 OD1 ASP A 142 1555 1555 2.06 LINK ZN ZN A 402 O ILE A 144 1555 1555 2.16 LINK ZN ZN A 402 O HOH A 794 1555 1555 2.15 LINK ZN ZN A 402 O HOH A 518 1555 1555 2.05 LINK ZN ZN A 403 O HOH A 803 1555 1555 2.77 LINK ZN ZN A 403 OD2 ASP A 142 1555 1555 1.94 LINK ZN ZN A 403 OD1 ASP A 294 1555 1555 2.10 LINK ZN ZN A 403 O HOH A 505 1555 1555 2.49 LINK ZN ZN A 403 OD1 ASP A 145 1555 1555 2.28 LINK ZN ZN A 404 OE2 GLU A 89 1555 1555 1.91 LINK ZN ZN A 404 O HOH A 653 1555 1555 2.09 LINK ZN ZN A 405 NE2 HIS A 224 1555 1555 2.11 LINK ZN ZN A 405 O HOH A 560 1555 1555 2.13 LINK ZN ZN A 405 O HOH A 668 1555 1555 2.07 LINK ZN ZN A 405 O HOH A 665 1555 1555 2.49 LINK ZN ZN A 405 NE2 HIS A 221 1555 1555 2.05 LINK ZN ZN A 406 OE2 GLU A 235 1555 1555 2.08 LINK ZN ZN A 406 NE2 HIS A 261 1555 1555 2.04 LINK ZN ZN A 406 O HOH A 613 1555 1555 2.35 LINK ZN ZN A 406 O HOH A 720 1555 1555 2.12 LINK ZN ZN A 406 NE2 HIS A 244 1555 1555 1.72 LINK ZN ZN A 407 NE2 HIS A 191 1555 1555 2.09 LINK ZN ZN A 407 O HOH A 729 1555 1555 2.51 LINK ZN ZN A 407 O HOH A 620 1555 1555 2.13 LINK ZN ZN A 408 OE1 GLU A 131 1555 1555 1.78 LINK ZN ZN A 409 OD2 ASP A 315 1555 1555 2.26 LINK ZN ZN A 409 O HOH A 786 1555 1555 2.32 LINK ZN ZN A 409 OD1 ASP A 342 1555 1555 1.81 LINK ZN ZN A 409 O HOH A 748 1555 1555 2.04 LINK ZN ZN A 408 O HOH A 620 1555 1565 2.39 LINK ZN ZN A 408 O HOH A 522 1555 1565 1.96 LINK OE2AGLU A 27 ZN ZN A 404 1555 1555 1.79 CISPEP 1 GLY A 336 PRO A 337 0 3.05 SITE 1 AC1 7 GLU A 72 ZN A 402 HOH A 502 HOH A 503 SITE 2 AC1 7 HOH A 517 HOH A 518 HOH A 793 SITE 1 AC2 6 GLU A 72 ASP A 142 ILE A 144 ZN A 401 SITE 2 AC2 6 HOH A 518 HOH A 794 SITE 1 AC3 6 ASP A 142 ASP A 145 ASP A 294 HOH A 505 SITE 2 AC3 6 HOH A 511 HOH A 803 SITE 1 AC4 4 GLU A 27 GLU A 89 HOH A 566 HOH A 653 SITE 1 AC5 5 HIS A 221 HIS A 224 HOH A 560 HOH A 665 SITE 2 AC5 5 HOH A 668 SITE 1 AC6 5 GLU A 235 HIS A 244 HIS A 261 HOH A 613 SITE 2 AC6 5 HOH A 720 SITE 1 AC7 6 HIS A 191 GLU A 192 ZN A 408 HOH A 620 SITE 2 AC7 6 HOH A 646 HOH A 729 SITE 1 AC8 6 GLU A 131 HIS A 191 ZN A 407 HOH A 522 SITE 2 AC8 6 HOH A 620 HOH A 646 SITE 1 AC9 4 ASP A 315 ASP A 342 HOH A 748 HOH A 786 SITE 1 BC1 3 MET A 313 CYS A 349 GLN A 353 CRYST1 54.682 45.359 71.280 90.00 111.40 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018288 0.000000 0.007165 0.00000 SCALE2 0.000000 0.022046 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015068 0.00000 MASTER 456 0 10 13 14 0 17 6 0 0 0 28 END