HEADER HYDROLASE 31-OCT-01 1K9Y TITLE THE PAPASE HAL2P COMPLEXED WITH MAGNESIUM IONS AND REACTION TITLE 2 PRODUCTS: AMP AND INORGANIC PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOTOLERANCE PROTEIN HAL2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HAL2P, 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE, COMPND 5 PHOSPHOADENYLATE 3'-NUCLEOTIDASE, 3'- COMPND 6 PHOSPHOADENYLYLSULFATE 3'-PHOSPHATASE; COMPND 7 EC: 3.1.3.7; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: HAL2; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: RS1051; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: MULTI-COPY PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PRS-421-HAL2 KEYWDS NUCLEOTIDASE, SALT TOLERANCE, INOSITOL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PATEL,A.ALBERT,T.L.BLUNDELL REVDAT 3 24-FEB-09 1K9Y 1 VERSN REVDAT 2 05-APR-05 1K9Y 1 JRNL REMARK REVDAT 1 07-NOV-01 1K9Y 0 JRNL AUTH S.PATEL,M.MARTINEZ-RIPOLL,T.L.BLUNDELL,A.ALBERT JRNL TITL STRUCTURAL ENZYMOLOGY OF JRNL TITL 2 LI(+)-SENSITIVE/MG(2+)-DEPENDENT PHOSPHATASES. JRNL REF J.MOL.BIOL. V. 320 1087 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12126627 JRNL DOI 10.1016/S0022-2836(02)00564-8 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 25847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1306 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1824 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2727 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.74000 REMARK 3 B22 (A**2) : 1.47000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.784 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2805 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2514 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3798 ; 1.739 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5866 ; 0.830 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 353 ; 6.346 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 501 ;17.566 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 432 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3124 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 542 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 621 ; 0.235 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2436 ; 0.219 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 245 ; 0.180 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.006 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.010 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.247 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 37 ; 0.244 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.349 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1750 ; 1.711 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2812 ; 2.656 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1055 ; 3.982 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 986 ; 5.933 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 1K9Y COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-01. REMARK 100 THE RCSB ID CODE IS RCSB014744. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25897 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 67.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1QGX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG5000 MME, 0.1 M SODIUM REMARK 280 ACETATE, 5 MM BETA-MERCAPTOETHANOL, 0.1 M MES (CRYSTALS WERE REMARK 280 SOAKED IN MOTHER LIQUOR CONTAINING 1 M MAGNESIUM CHLORIDE FOR REMARK 280 1 HOUR), PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.53750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 356 REMARK 465 ALA A 357 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 LYS A 32 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 550 O HOH A 709 2.02 REMARK 500 CB SER A 259 O HOH A 610 2.08 REMARK 500 N6 AMP A 501 O HOH A 724 2.10 REMARK 500 OE2 GLU A 119 O HOH A 706 2.13 REMARK 500 O HOH A 648 O HOH A 710 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 705 O HOH A 710 1655 1.89 REMARK 500 O HOH A 558 O HOH A 710 1655 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 104 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 324 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 324 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 3 51.91 -103.25 REMARK 500 GLU A 154 -144.12 -112.46 REMARK 500 PHE A 194 41.16 -145.75 REMARK 500 ASP A 213 -80.72 -99.90 REMARK 500 SER A 264 171.21 87.82 REMARK 500 GLN A 265 0.36 -63.71 REMARK 500 MET A 313 -51.42 -130.87 REMARK 500 ASP A 315 45.16 71.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 A 502 O2 REMARK 620 2 GLU A 72 OE1 97.8 REMARK 620 3 HOH A 504 O 94.6 81.1 REMARK 620 4 ASP A 142 OD1 164.6 90.0 99.8 REMARK 620 5 PO4 A 502 O3 67.3 96.7 161.3 98.7 REMARK 620 6 ILE A 144 O 88.2 164.6 84.3 87.7 98.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 A 502 O3 REMARK 620 2 HOH A 588 O 77.4 REMARK 620 3 AMP A 501 O3' 84.1 79.2 REMARK 620 4 ASP A 294 OD1 154.0 78.7 101.3 REMARK 620 5 ASP A 145 OD1 107.3 170.9 93.3 97.9 REMARK 620 6 ASP A 142 OD2 84.9 97.9 169.0 88.4 90.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 707 O REMARK 620 2 PO4 A 502 O1 103.5 REMARK 620 3 GLU A 72 OE2 86.6 99.0 REMARK 620 4 HOH A 704 O 91.7 92.1 168.9 REMARK 620 5 HOH A 584 O 96.9 159.5 82.9 86.3 REMARK 620 6 PO4 A 502 O2 171.4 68.0 95.9 87.4 91.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 502 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 501 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QGX RELATED DB: PDB REMARK 900 1QGX IS COMPLEXED WITH TWO MAGNESIUM IONS AND A LITHIUM ION REMARK 900 AND REACTION PRODUCTS AMP AND INORGANIC PHOSPHATE REMARK 900 RELATED ID: 1K9Z RELATED DB: PDB REMARK 900 THE PAPASE HAL2P COMPLEXED WITH ZINC IONS REMARK 900 RELATED ID: 1KA0 RELATED DB: PDB REMARK 900 THE PAPASE HAL2P COMPLEXED WITH A SODIUM ION AND THE REMARK 900 REACTION PRODUCT AMP REMARK 900 RELATED ID: 1KA1 RELATED DB: PDB REMARK 900 THE PAPASE HAL2P COMPLEXED WITH CALCIUM AND MAGNESIUM IONS REMARK 900 AND REACTION SUBSTRATE: PAP DBREF 1K9Y A 1 357 UNP P32179 HAL2_YEAST 1 357 SEQRES 1 A 357 MET ALA LEU GLU ARG GLU LEU LEU VAL ALA THR GLN ALA SEQRES 2 A 357 VAL ARG LYS ALA SER LEU LEU THR LYS ARG ILE GLN SER SEQRES 3 A 357 GLU VAL ILE SER HIS LYS ASP SER THR THR ILE THR LYS SEQRES 4 A 357 ASN ASP ASN SER PRO VAL THR THR GLY ASP TYR ALA ALA SEQRES 5 A 357 GLN THR ILE ILE ILE ASN ALA ILE LYS SER ASN PHE PRO SEQRES 6 A 357 ASP ASP LYS VAL VAL GLY GLU GLU SER SER SER GLY LEU SEQRES 7 A 357 SER ASP ALA PHE VAL SER GLY ILE LEU ASN GLU ILE LYS SEQRES 8 A 357 ALA ASN ASP GLU VAL TYR ASN LYS ASN TYR LYS LYS ASP SEQRES 9 A 357 ASP PHE LEU PHE THR ASN ASP GLN PHE PRO LEU LYS SER SEQRES 10 A 357 LEU GLU ASP VAL ARG GLN ILE ILE ASP PHE GLY ASN TYR SEQRES 11 A 357 GLU GLY GLY ARG LYS GLY ARG PHE TRP CYS LEU ASP PRO SEQRES 12 A 357 ILE ASP GLY THR LYS GLY PHE LEU ARG GLY GLU GLN PHE SEQRES 13 A 357 ALA VAL CYS LEU ALA LEU ILE VAL ASP GLY VAL VAL GLN SEQRES 14 A 357 LEU GLY CYS ILE GLY CYS PRO ASN LEU VAL LEU SER SER SEQRES 15 A 357 TYR GLY ALA GLN ASP LEU LYS GLY HIS GLU SER PHE GLY SEQRES 16 A 357 TYR ILE PHE ARG ALA VAL ARG GLY LEU GLY ALA PHE TYR SEQRES 17 A 357 SER PRO SER SER ASP ALA GLU SER TRP THR LYS ILE HIS SEQRES 18 A 357 VAL ARG HIS LEU LYS ASP THR LYS ASP MET ILE THR LEU SEQRES 19 A 357 GLU GLY VAL GLU LYS GLY HIS SER SER HIS ASP GLU GLN SEQRES 20 A 357 THR ALA ILE LYS ASN LYS LEU ASN ILE SER LYS SER LEU SEQRES 21 A 357 HIS LEU ASP SER GLN ALA LYS TYR CYS LEU LEU ALA LEU SEQRES 22 A 357 GLY LEU ALA ASP VAL TYR LEU ARG LEU PRO ILE LYS LEU SEQRES 23 A 357 SER TYR GLN GLU LYS ILE TRP ASP HIS ALA ALA GLY ASN SEQRES 24 A 357 VAL ILE VAL HIS GLU ALA GLY GLY ILE HIS THR ASP ALA SEQRES 25 A 357 MET GLU ASP VAL PRO LEU ASP PHE GLY ASN GLY ARG THR SEQRES 26 A 357 LEU ALA THR LYS GLY VAL ILE ALA SER SER GLY PRO ARG SEQRES 27 A 357 GLU LEU HIS ASP LEU VAL VAL SER THR SER CYS ASP VAL SEQRES 28 A 357 ILE GLN SER ARG ASN ALA HET MG A 401 1 HET MG A 403 1 HET MG A 402 1 HET PO4 A 502 5 HET AMP A 501 23 HET BME A 503 4 HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM BME BETA-MERCAPTOETHANOL FORMUL 2 MG 3(MG 2+) FORMUL 5 PO4 O4 P 3- FORMUL 6 AMP C10 H14 N5 O7 P FORMUL 7 BME C2 H6 O S FORMUL 8 HOH *235(H2 O) HELIX 1 1 LEU A 3 HIS A 31 1 29 HELIX 2 2 HIS A 31 THR A 35 1 5 HELIX 3 3 THR A 47 PHE A 64 1 18 HELIX 4 4 SER A 79 TYR A 101 1 23 HELIX 5 5 SER A 117 PHE A 127 1 11 HELIX 6 6 GLY A 146 GLY A 153 1 8 HELIX 7 7 VAL A 179 GLY A 184 5 6 HELIX 8 8 ASP A 227 ASP A 230 5 4 HELIX 9 9 SER A 243 ASN A 255 1 13 HELIX 10 10 GLN A 265 GLY A 274 1 10 HELIX 11 11 LYS A 291 ASP A 294 5 4 HELIX 12 12 HIS A 295 ALA A 305 1 11 HELIX 13 13 PRO A 337 ARG A 355 1 19 SHEET 1 A 2 THR A 36 THR A 38 0 SHEET 2 A 2 PRO A 44 THR A 46 -1 O VAL A 45 N ILE A 37 SHEET 1 B 7 VAL A 69 GLY A 71 0 SHEET 2 B 7 ARG A 137 ASP A 145 1 O LEU A 141 N VAL A 70 SHEET 3 B 7 ALA A 157 VAL A 164 -1 O ALA A 157 N ASP A 145 SHEET 4 B 7 VAL A 167 CYS A 175 -1 O GLY A 174 N VAL A 158 SHEET 5 B 7 TYR A 196 VAL A 201 -1 O TYR A 196 N CYS A 175 SHEET 6 B 7 ALA A 206 PRO A 210 -1 O SER A 209 N ILE A 197 SHEET 7 B 7 THR A 218 ILE A 220 -1 O THR A 218 N TYR A 208 SHEET 1 C 5 LYS A 258 HIS A 261 0 SHEET 2 C 5 ILE A 232 GLU A 235 1 N THR A 233 O LEU A 260 SHEET 3 C 5 VAL A 278 ARG A 281 1 O LEU A 280 N LEU A 234 SHEET 4 C 5 VAL A 331 SER A 334 -1 O ALA A 333 N TYR A 279 SHEET 5 C 5 ILE A 308 THR A 310 -1 N THR A 310 O ILE A 332 LINK S2 BME A 503 SG CYS A 349 1555 1555 1.83 LINK MG MG A 401 O2 PO4 A 502 1555 1555 2.25 LINK MG MG A 401 OE1 GLU A 72 1555 1555 1.98 LINK MG MG A 401 O HOH A 504 1555 1555 2.17 LINK MG MG A 401 OD1 ASP A 142 1555 1555 2.03 LINK MG MG A 401 O3 PO4 A 502 1555 1555 2.10 LINK MG MG A 401 O ILE A 144 1555 1555 2.06 LINK MG MG A 402 O3 PO4 A 502 1555 1555 2.03 LINK MG MG A 402 O HOH A 588 1555 1555 2.47 LINK MG MG A 402 O3' AMP A 501 1555 1555 2.06 LINK MG MG A 402 OD1 ASP A 294 1555 1555 1.98 LINK MG MG A 402 OD1 ASP A 145 1555 1555 2.06 LINK MG MG A 402 OD2 ASP A 142 1555 1555 2.06 LINK MG MG A 403 O HOH A 707 1555 1555 2.00 LINK MG MG A 403 O1 PO4 A 502 1555 1555 1.99 LINK MG MG A 403 OE2 GLU A 72 1555 1555 2.10 LINK MG MG A 403 O HOH A 704 1555 1555 2.13 LINK MG MG A 403 O HOH A 584 1555 1555 2.29 LINK MG MG A 403 O2 PO4 A 502 1555 1555 2.36 CISPEP 1 GLY A 336 PRO A 337 0 3.71 SITE 1 AC1 5 GLU A 72 ASP A 142 ILE A 144 PO4 A 502 SITE 2 AC1 5 HOH A 504 SITE 1 AC2 5 GLU A 72 PO4 A 502 HOH A 584 HOH A 704 SITE 2 AC2 5 HOH A 707 SITE 1 AC3 6 ASP A 142 ASP A 145 ASP A 294 AMP A 501 SITE 2 AC3 6 PO4 A 502 HOH A 588 SITE 1 AC4 13 GLU A 72 ASP A 142 ILE A 144 ASP A 145 SITE 2 AC4 13 GLY A 146 THR A 147 MG A 401 MG A 402 SITE 3 AC4 13 MG A 403 AMP A 501 HOH A 543 HOH A 588 SITE 4 AC4 13 HOH A 704 SITE 1 AC5 21 ASP A 145 GLY A 240 HIS A 241 ASP A 263 SITE 2 AC5 21 SER A 264 LYS A 267 ARG A 281 TYR A 288 SITE 3 AC5 21 GLU A 290 ASP A 294 MG A 402 PO4 A 502 SITE 4 AC5 21 HOH A 532 HOH A 537 HOH A 554 HOH A 586 SITE 5 AC5 21 HOH A 588 HOH A 621 HOH A 633 HOH A 644 SITE 6 AC5 21 HOH A 724 SITE 1 AC6 4 LEU A 118 MET A 313 CYS A 349 GLN A 353 CRYST1 54.693 45.075 71.794 90.00 110.96 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018284 0.000000 0.007003 0.00000 SCALE2 0.000000 0.022185 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014915 0.00000 MASTER 393 0 6 13 14 0 17 6 0 0 0 28 END