HEADER RNA BINDING PROTEIN 24-OCT-01 1K8H TITLE NMR STRUCTURE OF SMALL PROTEIN B (SMPB) FROM AQUIFEX TITLE 2 AEOLICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL PROTEIN B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SSRA-BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SMPB, SSRA ASSOCIATED PROTEIN, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR G.DONG,D.W.HOFFMAN REVDAT 3 24-FEB-09 1K8H 1 VERSN REVDAT 2 10-APR-02 1K8H 1 JRNL REVDAT 1 20-MAR-02 1K8H 0 JRNL AUTH G.DONG,J.NOWAKOWSKI,D.W.HOFFMAN JRNL TITL STRUCTURE OF SMALL PROTEIN B: THE PROTEIN JRNL TITL 2 COMPONENT OF THE TMRNA-SMPB SYSTEM FOR RIBOSOME JRNL TITL 3 RESCUE. JRNL REF EMBO J. V. 21 1845 2002 JRNL REFN ISSN 0261-4189 JRNL PMID 11927568 JRNL DOI 10.1093/EMBOJ/21.7.1845 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1K8H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-01. REMARK 100 THE RCSB ID CODE IS RCSB014691. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM SMPB REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D_NOESY, 3D_13C-SEPARATED_ REMARK 210 NOESY, 3D_15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS SOLVED USING STANDARD 2D AND 3D REMARK 210 HETERONUCLEAR NMR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 -60.06 -98.93 REMARK 500 1 SER A 3 -169.56 -75.48 REMARK 500 1 ASP A 4 179.64 60.58 REMARK 500 1 LYS A 5 27.63 -148.53 REMARK 500 1 ALA A 10 168.09 54.06 REMARK 500 1 LYS A 13 -34.23 174.49 REMARK 500 1 LEU A 22 -68.77 -109.95 REMARK 500 1 LYS A 32 -166.36 -57.07 REMARK 500 1 LYS A 42 -82.15 -57.44 REMARK 500 1 PHE A 47 -68.91 -120.87 REMARK 500 1 ASN A 56 -96.07 54.58 REMARK 500 1 TYR A 65 46.81 -148.07 REMARK 500 1 PRO A 68 160.58 -47.93 REMARK 500 1 ILE A 74 33.34 -98.82 REMARK 500 1 LEU A 80 -51.02 -130.54 REMARK 500 1 ARG A 81 79.75 54.29 REMARK 500 1 LEU A 86 174.19 -49.27 REMARK 500 1 LEU A 87 -156.26 -172.68 REMARK 500 1 HIS A 88 -160.65 -105.33 REMARK 500 1 LEU A 109 -99.70 -123.75 REMARK 500 1 ASN A 115 -57.46 73.45 REMARK 500 1 ASN A 116 -7.44 -177.22 REMARK 500 1 LYS A 128 155.79 61.78 REMARK 500 1 LYS A 129 -175.48 -175.73 REMARK 500 1 LEU A 130 -79.37 63.79 REMARK 500 2 ASP A 4 104.74 57.11 REMARK 500 2 ALA A 10 164.68 55.23 REMARK 500 2 GLU A 11 102.11 179.53 REMARK 500 2 LYS A 13 33.73 -162.69 REMARK 500 2 LYS A 18 77.12 -156.63 REMARK 500 2 TYR A 19 122.60 175.96 REMARK 500 2 LEU A 22 -69.33 -130.07 REMARK 500 2 LYS A 32 69.31 -164.39 REMARK 500 2 SER A 34 -41.45 82.86 REMARK 500 2 LYS A 42 78.47 -165.24 REMARK 500 2 VAL A 45 161.56 51.63 REMARK 500 2 PHE A 47 121.92 -170.67 REMARK 500 2 LYS A 48 -179.64 60.11 REMARK 500 2 ASP A 49 -13.05 80.12 REMARK 500 2 ASN A 56 -102.83 55.68 REMARK 500 2 LYS A 70 99.67 -172.52 REMARK 500 2 GLU A 75 127.17 63.11 REMARK 500 2 HIS A 77 -67.66 68.81 REMARK 500 2 LEU A 87 -130.24 -138.47 REMARK 500 2 HIS A 88 -84.17 -125.40 REMARK 500 2 LYS A 89 -72.68 174.09 REMARK 500 2 VAL A 99 -70.24 -49.90 REMARK 500 2 LEU A 109 -98.89 -123.04 REMARK 500 2 ASN A 115 -56.27 72.32 REMARK 500 2 ASN A 116 -11.78 -177.58 REMARK 500 2 LYS A 128 -49.37 177.81 REMARK 500 2 LYS A 129 79.92 -178.10 REMARK 500 3 LYS A 2 163.15 60.39 REMARK 500 3 ASP A 4 41.26 -148.45 REMARK 500 3 ALA A 10 160.28 55.75 REMARK 500 3 GLU A 11 133.63 -178.28 REMARK 500 3 ASN A 12 135.93 -177.28 REMARK 500 3 LYS A 18 -78.19 -134.80 REMARK 500 3 TYR A 19 104.21 -41.18 REMARK 500 3 LEU A 22 -82.94 -102.77 REMARK 500 3 LEU A 31 172.72 60.93 REMARK 500 3 LYS A 32 16.50 -143.74 REMARK 500 3 LYS A 42 76.87 -176.55 REMARK 500 3 THR A 44 119.15 -162.61 REMARK 500 3 PHE A 47 -169.01 -164.58 REMARK 500 3 ASN A 56 -88.63 59.86 REMARK 500 3 TYR A 69 31.06 -163.32 REMARK 500 3 GLU A 75 178.24 61.57 REMARK 500 3 ASP A 78 116.36 62.26 REMARK 500 3 PRO A 79 63.29 -65.44 REMARK 500 3 LEU A 80 -73.36 -149.95 REMARK 500 3 ARG A 81 -177.59 50.23 REMARK 500 3 LEU A 86 -178.11 -68.45 REMARK 500 3 LEU A 87 -156.73 -166.41 REMARK 500 3 HIS A 88 -83.71 -96.78 REMARK 500 3 LYS A 89 -62.73 173.13 REMARK 500 3 LEU A 109 -100.77 -125.38 REMARK 500 3 ASN A 115 -55.56 73.09 REMARK 500 3 ASN A 116 -9.34 -178.09 REMARK 500 3 LYS A 129 -58.74 -146.38 REMARK 500 3 LEU A 130 123.48 63.02 REMARK 500 3 ASP A 132 157.89 60.96 REMARK 500 4 ALA A 10 175.13 51.37 REMARK 500 4 LYS A 13 -37.46 175.81 REMARK 500 4 LEU A 22 -78.60 -132.02 REMARK 500 4 LEU A 31 -176.66 -174.82 REMARK 500 4 LYS A 32 136.44 -176.88 REMARK 500 4 SER A 34 -31.01 177.43 REMARK 500 4 LYS A 42 -79.49 -51.80 REMARK 500 4 SER A 46 -164.36 73.50 REMARK 500 4 PHE A 47 107.02 67.69 REMARK 500 4 LYS A 48 151.22 62.32 REMARK 500 4 ASN A 56 92.29 -41.33 REMARK 500 4 TYR A 69 -50.46 -128.58 REMARK 500 4 HIS A 71 33.33 -98.80 REMARK 500 4 ASN A 76 -177.35 59.85 REMARK 500 4 LEU A 80 -50.44 -132.10 REMARK 500 4 ARG A 81 -179.81 60.92 REMARK 500 4 LEU A 109 -99.10 -109.88 REMARK 500 4 ASN A 115 -54.24 73.61 REMARK 500 4 ASN A 116 -9.14 -179.87 REMARK 500 4 LYS A 128 152.56 61.67 REMARK 500 4 LYS A 129 -165.76 43.57 REMARK 500 4 TYR A 131 -46.43 -154.58 REMARK 500 5 SER A 3 155.82 61.19 REMARK 500 5 ALA A 10 -82.05 61.44 REMARK 500 5 GLU A 11 96.11 47.05 REMARK 500 5 LYS A 13 36.84 -147.20 REMARK 500 5 TYR A 19 119.22 174.87 REMARK 500 5 LEU A 22 -69.35 -135.79 REMARK 500 5 LYS A 42 79.04 -177.53 REMARK 500 5 PHE A 47 79.38 -178.77 REMARK 500 5 ASP A 49 80.52 -176.92 REMARK 500 5 ASN A 56 -91.29 53.15 REMARK 500 5 LEU A 64 48.36 -168.28 REMARK 500 5 PRO A 68 -160.50 -58.14 REMARK 500 5 HIS A 71 98.64 63.29 REMARK 500 5 ALA A 72 -77.31 -144.34 REMARK 500 5 THR A 73 -39.98 -178.07 REMARK 500 5 GLU A 75 167.33 58.79 REMARK 500 5 HIS A 77 175.20 54.96 REMARK 500 5 PRO A 79 -70.24 -55.64 REMARK 500 5 HIS A 88 -170.08 -64.59 REMARK 500 5 LEU A 109 -97.91 -123.07 REMARK 500 5 ASN A 115 -54.28 73.24 REMARK 500 5 ASN A 116 -10.63 -178.98 REMARK 500 5 LYS A 128 -169.54 62.69 REMARK 500 5 ASP A 132 101.75 59.86 REMARK 500 6 ALA A 10 -84.59 68.41 REMARK 500 6 GLU A 11 107.80 55.49 REMARK 500 6 ASN A 12 110.44 -171.89 REMARK 500 6 LEU A 22 -45.96 -133.47 REMARK 500 6 SER A 34 -41.31 174.55 REMARK 500 6 LYS A 42 77.85 175.90 REMARK 500 6 SER A 46 146.32 179.60 REMARK 500 6 PHE A 47 44.12 -158.66 REMARK 500 6 ASP A 49 15.18 -147.41 REMARK 500 6 ASN A 56 -91.10 54.64 REMARK 500 6 TYR A 65 92.46 -170.32 REMARK 500 6 PRO A 68 173.20 -52.94 REMARK 500 6 ILE A 74 72.24 -151.88 REMARK 500 6 ASP A 78 -65.76 -160.41 REMARK 500 6 ARG A 81 -166.70 -108.27 REMARK 500 6 LEU A 87 -149.91 -179.65 REMARK 500 6 VAL A 99 -70.60 -52.11 REMARK 500 6 LEU A 109 -90.89 -113.04 REMARK 500 6 ASN A 115 -58.84 72.59 REMARK 500 6 ASN A 116 -5.49 -177.03 REMARK 500 7 LYS A 5 89.98 -162.87 REMARK 500 7 ALA A 10 157.93 55.08 REMARK 500 7 GLU A 11 108.56 178.82 REMARK 500 7 LYS A 13 28.73 -156.80 REMARK 500 7 LYS A 18 -72.22 -124.08 REMARK 500 7 TYR A 19 104.93 -56.37 REMARK 500 7 LEU A 22 -70.38 -128.52 REMARK 500 7 LYS A 42 -81.51 -67.29 REMARK 500 7 THR A 44 -157.15 -106.81 REMARK 500 7 VAL A 45 142.88 59.04 REMARK 500 7 SER A 46 83.52 59.33 REMARK 500 7 PHE A 47 -58.22 -135.87 REMARK 500 7 LYS A 48 29.33 -160.06 REMARK 500 7 ASP A 49 26.48 -155.01 REMARK 500 7 ASN A 56 93.03 -34.98 REMARK 500 7 TYR A 65 50.26 -90.75 REMARK 500 7 ILE A 66 -165.51 -101.44 REMARK 500 7 ALA A 67 89.99 76.93 REMARK 500 7 TYR A 69 134.04 62.21 REMARK 500 7 LYS A 70 58.74 -176.51 REMARK 500 7 HIS A 71 168.07 59.70 REMARK 500 7 ALA A 72 132.16 63.46 REMARK 500 7 THR A 73 102.80 60.48 REMARK 500 7 ASN A 76 -80.69 63.78 REMARK 500 7 HIS A 77 71.10 56.03 REMARK 500 7 PRO A 79 49.99 -81.58 REMARK 500 7 LEU A 80 128.48 177.22 REMARK 500 7 LEU A 87 -154.72 -141.41 REMARK 500 7 HIS A 88 -90.29 -103.56 REMARK 500 7 LYS A 89 -70.00 -168.09 REMARK 500 7 LEU A 109 -89.83 -99.82 REMARK 500 7 ASN A 115 -53.98 73.02 REMARK 500 7 ASN A 116 -9.65 179.86 REMARK 500 7 LYS A 128 175.65 61.77 REMARK 500 7 TYR A 131 163.08 60.36 REMARK 500 8 ALA A 10 157.25 54.99 REMARK 500 8 GLU A 11 127.77 -178.27 REMARK 500 8 ASN A 12 134.85 179.32 REMARK 500 8 LYS A 18 -80.19 -117.11 REMARK 500 8 TYR A 19 107.64 -48.15 REMARK 500 8 LEU A 22 -69.56 -129.23 REMARK 500 8 LYS A 32 -57.76 -149.71 REMARK 500 8 LYS A 42 73.96 -176.58 REMARK 500 8 SER A 46 -77.57 -73.67 REMARK 500 8 ASP A 49 81.69 175.48 REMARK 500 8 ASN A 56 -95.27 57.36 REMARK 500 8 TYR A 69 108.47 -177.76 REMARK 500 8 HIS A 71 25.83 -155.57 REMARK 500 8 ALA A 72 -177.16 52.59 REMARK 500 8 THR A 73 81.70 57.42 REMARK 500 8 ASN A 76 65.46 61.05 REMARK 500 8 LEU A 87 146.14 -179.09 REMARK 500 8 HIS A 88 -176.01 -63.11 REMARK 500 8 VAL A 99 -70.53 -53.52 REMARK 500 8 LEU A 109 -97.26 -122.64 REMARK 500 8 ASN A 115 -56.97 72.78 REMARK 500 8 ASN A 116 -11.24 -177.43 REMARK 500 8 TYR A 131 -60.44 -168.91 REMARK 500 9 SER A 3 107.54 60.65 REMARK 500 9 ALA A 10 159.04 52.65 REMARK 500 9 GLU A 11 141.14 179.71 REMARK 500 9 LYS A 13 17.54 -157.33 REMARK 500 9 LEU A 22 -63.53 -138.23 REMARK 500 9 LEU A 31 178.18 -49.80 REMARK 500 9 LYS A 42 80.54 -173.16 REMARK 500 9 PHE A 47 -170.26 58.89 REMARK 500 9 ASP A 49 38.13 -175.15 REMARK 500 9 ASN A 56 95.64 -37.47 REMARK 500 9 TYR A 65 69.98 178.82 REMARK 500 9 TYR A 69 148.55 62.55 REMARK 500 9 LYS A 70 -70.24 -95.53 REMARK 500 9 HIS A 71 -176.45 -69.30 REMARK 500 9 THR A 73 -153.99 -150.54 REMARK 500 9 ILE A 74 31.60 -91.73 REMARK 500 9 GLU A 75 97.94 57.89 REMARK 500 9 ASN A 76 31.76 -164.12 REMARK 500 9 HIS A 88 -74.46 -93.32 REMARK 500 9 LYS A 89 -76.36 167.79 REMARK 500 9 VAL A 99 -70.88 -49.79 REMARK 500 9 LEU A 109 -93.64 -120.65 REMARK 500 9 ASN A 115 -55.76 73.39 REMARK 500 9 ASN A 116 -8.25 -178.56 REMARK 500 9 LYS A 128 155.03 61.53 REMARK 500 9 TYR A 131 -46.65 -131.30 REMARK 500 10 LYS A 2 104.99 60.65 REMARK 500 10 ASP A 4 -76.50 -125.28 REMARK 500 10 LYS A 5 30.64 -163.03 REMARK 500 10 ALA A 10 156.16 69.86 REMARK 500 10 LYS A 13 38.23 -177.12 REMARK 500 10 LYS A 18 -69.11 -125.99 REMARK 500 10 TYR A 19 105.53 -42.65 REMARK 500 10 LEU A 22 -65.94 -130.11 REMARK 500 10 LEU A 31 -176.70 -54.92 REMARK 500 10 LYS A 32 -81.78 -142.96 REMARK 500 10 LYS A 42 82.61 -165.16 REMARK 500 10 THR A 44 -147.00 -90.37 REMARK 500 10 VAL A 45 95.34 45.68 REMARK 500 10 PHE A 47 -164.88 -72.78 REMARK 500 10 LYS A 48 62.28 -115.16 REMARK 500 10 ASN A 56 94.02 -33.19 REMARK 500 10 PRO A 68 -167.87 -70.36 REMARK 500 10 HIS A 71 -48.64 -137.95 REMARK 500 10 ASP A 78 64.61 -158.14 REMARK 500 10 VAL A 99 -70.33 -49.71 REMARK 500 10 LEU A 109 -101.51 -117.56 REMARK 500 10 ASN A 115 -54.52 73.03 REMARK 500 10 ASN A 116 -12.26 -179.65 REMARK 500 10 LYS A 128 103.33 60.72 REMARK 500 10 LYS A 129 96.00 -59.13 REMARK 500 10 ASP A 132 73.44 59.84 REMARK 500 REMARK 500 REMARK: NULL DBREF 1K8H A 1 133 UNP O66640 SSRP_AQUAE 2 134 SEQRES 1 A 133 GLY LYS SER ASP LYS ILE ILE PRO ILE ALA GLU ASN LYS SEQRES 2 A 133 GLU ALA LYS ALA LYS TYR ASP ILE LEU GLU THR TYR GLU SEQRES 3 A 133 ALA GLY ILE VAL LEU LYS GLY SER GLU VAL LYS SER LEU SEQRES 4 A 133 ARG GLU LYS GLY THR VAL SER PHE LYS ASP SER PHE VAL SEQRES 5 A 133 ARG ILE GLU ASN GLY GLU ALA TRP LEU TYR ASN LEU TYR SEQRES 6 A 133 ILE ALA PRO TYR LYS HIS ALA THR ILE GLU ASN HIS ASP SEQRES 7 A 133 PRO LEU ARG LYS ARG LYS LEU LEU LEU HIS LYS ARG GLU SEQRES 8 A 133 ILE MET ARG LEU TYR GLY LYS VAL GLN GLU LYS GLY TYR SEQRES 9 A 133 THR ILE ILE PRO LEU LYS LEU TYR TRP LYS ASN ASN LYS SEQRES 10 A 133 VAL LYS VAL LEU ILE ALA LEU ALA LYS GLY LYS LYS LEU SEQRES 11 A 133 TYR ASP ARG HELIX 1 1 LYS A 13 TYR A 19 1 7 HELIX 2 2 GLY A 33 GLY A 43 1 11 HELIX 3 3 LYS A 89 GLY A 103 1 15 SHEET 1 A 3 ILE A 21 ILE A 29 0 SHEET 2 A 3 LYS A 117 ALA A 125 -1 O VAL A 120 N ALA A 27 SHEET 3 A 3 THR A 105 LYS A 114 -1 N TYR A 112 O LYS A 119 SHEET 1 B 3 SER A 50 GLU A 55 0 SHEET 2 B 3 GLU A 58 ASN A 63 -1 O TYR A 62 N PHE A 51 SHEET 3 B 3 ARG A 83 LEU A 85 -1 O ARG A 83 N LEU A 61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 323 0 0 3 6 0 0 6 0 0 0 11 END