HEADER ELECTRON TRANSPORT 11-SEP-01 1JYB TITLE CRYSTAL STRUCTURE OF RUBRERYTHRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUBRERYTHRIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS; SOURCE 3 ORGANISM_TAXID: 881 KEYWDS ALPHA HELIX BUNDLE, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR W.R.CHANG,M.LI,M.Y.LIU REVDAT 4 13-JUL-11 1JYB 1 VERSN REVDAT 3 24-FEB-09 1JYB 1 VERSN REVDAT 2 24-JUN-03 1JYB 1 JRNL REVDAT 1 11-SEP-02 1JYB 0 JRNL AUTH M.LI,M.Y.LIU,J.LEGALL,L.L.GUI,J.LIAO,T.JIANG,J.P.ZHANG, JRNL AUTH 2 D.C.LIANG,W.R.CHANG JRNL TITL CRYSTAL STRUCTURE STUDIES ON RUBRERYTHRIN: ENZYMATIC JRNL TITL 2 ACTIVITY IN RELATION TO THE ZINC MOVEMENT. JRNL REF J.BIOL.INORG.CHEM. V. 8 149 2003 JRNL REFN ISSN 0949-8257 JRNL PMID 12459910 JRNL DOI 10.1007/S00775-002-0400-0 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.4 REMARK 3 NUMBER OF REFLECTIONS : 8671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 867 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1514 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 2.80 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-SEP-01. REMARK 100 THE RCSB ID CODE IS RCSB014327. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-99 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : CONVENTIONAL CU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14352 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG1500, TRIS, PH 7.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.83500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.77600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.87700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.83500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.77600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.87700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.83500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.77600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.87700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.83500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.77600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.87700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED BY REMARK 300 THE TWO FOLD AXIS: -X, -Y, Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 13170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -269.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 56 NE2 HIS A 56 CD2 -0.067 REMARK 500 HIS A 84 NE2 HIS A 84 CD2 -0.086 REMARK 500 HIS A 95 NE2 HIS A 95 CD2 -0.068 REMARK 500 HIS A 96 NE2 HIS A 96 CD2 -0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 24 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP A 44 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 GLY A 78 CA - C - N ANGL. DEV. = -15.8 DEGREES REMARK 500 GLY A 78 O - C - N ANGL. DEV. = 16.9 DEGREES REMARK 500 GLU A 97 OE1 - CD - OE2 ANGL. DEV. = -16.3 DEGREES REMARK 500 TYR A 114 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 GLU A 128 OE1 - CD - OE2 ANGL. DEV. = -8.6 DEGREES REMARK 500 ARG A 134 CB - CG - CD ANGL. DEV. = -16.3 DEGREES REMARK 500 ARG A 134 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 134 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 140 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 146 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 146 NE - CZ - NH2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 150 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 150 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TRP A 156 CD1 - CG - CD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 TRP A 156 CE2 - CD2 - CG ANGL. DEV. = -6.9 DEGREES REMARK 500 TRP A 191 CD1 - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP A 191 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 39 78.05 -114.60 REMARK 500 ILE A 79 115.16 73.58 REMARK 500 ALA A 81 -154.68 -118.81 REMARK 500 GLU A 100 -65.55 -106.85 REMARK 500 TYR A 114 66.64 -108.51 REMARK 500 THR A 154 -168.03 -126.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 8 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 600 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 94 OE1 REMARK 620 2 GLU A 94 OE2 61.7 REMARK 620 3 GLU A 128 OE2 95.5 155.2 REMARK 620 4 GLU A 53 OE2 162.2 106.7 97.7 REMARK 620 5 HIS A 131 ND1 110.9 98.1 80.1 83.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 53 OE1 REMARK 620 2 GLU A 97 OE2 173.3 REMARK 620 3 GLU A 20 OE2 69.9 111.2 REMARK 620 4 GLU A 128 OE1 84.2 102.6 77.5 REMARK 620 5 GLU A 20 OE1 92.7 83.1 53.4 128.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 177 SG REMARK 620 2 CYS A 158 SG 105.9 REMARK 620 3 CYS A 161 SG 113.4 113.8 REMARK 620 4 CYS A 174 SG 108.3 112.9 102.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 DBREF 1JYB A 1 191 UNP P24931 RUBY_DESVH 1 191 SEQRES 1 A 191 MET LYS SER LEU LYS GLY SER ARG THR GLU LYS ASN ILE SEQRES 2 A 191 LEU THR ALA PHE ALA GLY GLU SER GLN ALA ARG ASN ARG SEQRES 3 A 191 TYR ASN TYR PHE GLY GLY GLN ALA LYS LYS ASP GLY PHE SEQRES 4 A 191 VAL GLN ILE SER ASP ILE PHE ALA GLU THR ALA ASP GLN SEQRES 5 A 191 GLU ARG GLU HIS ALA LYS ARG LEU PHE LYS PHE LEU GLU SEQRES 6 A 191 GLY GLY ASP LEU GLU ILE VAL ALA ALA PHE PRO ALA GLY SEQRES 7 A 191 ILE ILE ALA ASP THR HIS ALA ASN LEU ILE ALA SER ALA SEQRES 8 A 191 ALA GLY GLU HIS HIS GLU TYR THR GLU MET TYR PRO SER SEQRES 9 A 191 PHE ALA ARG ILE ALA ARG GLU GLU GLY TYR GLU GLU ILE SEQRES 10 A 191 ALA ARG VAL PHE ALA SER ILE ALA VAL ALA GLU GLU PHE SEQRES 11 A 191 HIS GLU LYS ARG PHE LEU ASP PHE ALA ARG ASN ILE LYS SEQRES 12 A 191 GLU GLY ARG VAL PHE LEU ARG GLU GLN ALA THR LYS TRP SEQRES 13 A 191 ARG CYS ARG ASN CYS GLY TYR VAL HIS GLU GLY THR GLY SEQRES 14 A 191 ALA PRO GLU LEU CYS PRO ALA CYS ALA HIS PRO LYS ALA SEQRES 15 A 191 HIS PHE GLU LEU LEU GLY ILE ASN TRP HET FE A 600 1 HET FE A 401 1 HET ZN A 601 1 HETNAM FE FE (III) ION HETNAM ZN ZINC ION FORMUL 2 FE 2(FE 3+) FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *69(H2 O) HELIX 1 1 SER A 7 GLY A 38 1 32 HELIX 2 2 PHE A 39 LYS A 62 1 24 HELIX 3 3 ASP A 82 GLU A 100 1 19 HELIX 4 4 GLU A 100 GLU A 112 1 13 HELIX 5 5 TYR A 114 GLY A 145 1 32 HELIX 6 6 PRO A 180 ALA A 182 5 3 SHEET 1 A 3 VAL A 164 GLY A 169 0 SHEET 2 A 3 LEU A 149 CYS A 158 -1 N THR A 154 O GLY A 167 SHEET 3 A 3 PHE A 184 LEU A 186 -1 O GLU A 185 N ARG A 157 LINK FE FE A 600 OE1 GLU A 94 1555 1555 2.10 LINK FE FE A 600 OE2 GLU A 94 1555 1555 2.09 LINK ZN ZN A 601 OE1 GLU A 53 1555 1555 2.17 LINK ZN ZN A 601 OE2 GLU A 97 1555 1555 2.09 LINK FE FE A 401 SG CYS A 177 1555 1555 2.29 LINK FE FE A 401 SG CYS A 158 1555 1555 2.27 LINK FE FE A 401 SG CYS A 161 1555 1555 2.26 LINK FE FE A 401 SG CYS A 174 1555 1555 2.27 LINK FE FE A 600 OE2 GLU A 128 1555 1555 2.21 LINK FE FE A 600 OE2 GLU A 53 1555 1555 2.24 LINK FE FE A 600 ND1 HIS A 131 1555 1555 2.46 LINK ZN ZN A 601 OE2 GLU A 20 1555 1555 2.63 LINK ZN ZN A 601 OE1 GLU A 128 1555 1555 2.29 LINK ZN ZN A 601 OE1 GLU A 20 1555 1555 2.25 SITE 1 AC1 5 GLU A 53 GLU A 94 GLU A 128 HIS A 131 SITE 2 AC1 5 ZN A 601 SITE 1 AC2 4 CYS A 158 CYS A 161 CYS A 174 CYS A 177 SITE 1 AC3 5 GLU A 20 GLU A 53 GLU A 97 GLU A 128 SITE 2 AC3 5 FE A 600 CRYST1 49.670 81.552 99.754 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020133 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012262 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010025 0.00000 MASTER 398 0 3 6 3 0 5 6 0 0 0 15 END