HEADER TRANSCRIPTION/DNA 20-AUG-01 1JT0 TITLE CRYSTAL STRUCTURE OF A COOPERATIVE QACR-DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: QACA OPERATOR; COMPND 3 CHAIN: E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5'REGION; COMPND 7 CHAIN: A, B, C, D; COMPND 8 SYNONYM: QACR REPRESSOR, ORF 188; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 5 ORGANISM_TAXID: 1280; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5A; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSK5210 KEYWDS MULTIDRUG BINDING PROTEIN, COOPERATIVE DNA BINDING, DIMER OF DIMERS, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER,M.C.MILLER,S.GRKOVIC,M.H.BROWN,R.A.SKURRAY,R.G.BRENNAN REVDAT 4 27-OCT-21 1JT0 1 REMARK SEQADV REVDAT 3 24-FEB-09 1JT0 1 VERSN REVDAT 2 30-SEP-03 1JT0 1 DBREF REVDAT 1 08-MAR-02 1JT0 0 JRNL AUTH M.A.SCHUMACHER,M.C.MILLER,S.GRKOVIC,M.H.BROWN,R.A.SKURRAY, JRNL AUTH 2 R.G.BRENNAN JRNL TITL STRUCTURAL BASIS FOR COOPERATIVE DNA BINDING BY TWO DIMERS JRNL TITL 2 OF THE MULTIDRUG-BINDING PROTEIN QACR. JRNL REF EMBO J. V. 21 1210 2002 JRNL REFN ISSN 0261-4189 JRNL PMID 11867549 JRNL DOI 10.1093/EMBOJ/21.5.1210 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 12802447.790 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 57542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 5846 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8690 REMARK 3 BIN R VALUE (WORKING SET) : 0.3630 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 973 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6239 REMARK 3 NUCLEIC ACID ATOMS : 1142 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 144.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.87000 REMARK 3 B22 (A**2) : 7.87000 REMARK 3 B33 (A**2) : -15.74000 REMARK 3 B12 (A**2) : 19.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.60 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.65 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.060 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 86.03 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JT0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1000014148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59396 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 75.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.52700 REMARK 200 R SYM FOR SHELL (I) : 0.52000 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULPHATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.30000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.65000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.97500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.32500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 126.62500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ENTIRE QACR DIMER OF DIMER - DNA COMPLEX IS CONTAINED REMARK 300 WITHIN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 MET B 1 REMARK 465 HIS B 190 REMARK 465 HIS B 191 REMARK 465 HIS B 192 REMARK 465 HIS B 193 REMARK 465 HIS B 194 REMARK 465 MET C 1 REMARK 465 HIS C 190 REMARK 465 HIS C 191 REMARK 465 HIS C 192 REMARK 465 HIS C 193 REMARK 465 HIS C 194 REMARK 465 MET D 1 REMARK 465 SER D 187 REMARK 465 LYS D 188 REMARK 465 HIS D 189 REMARK 465 HIS D 190 REMARK 465 HIS D 191 REMARK 465 HIS D 192 REMARK 465 HIS D 193 REMARK 465 HIS D 194 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 TYR D 103 CB TYR D 107 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT E 19 C1' - O4' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DT E 19 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DT E 19 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 20 -83.14 -65.42 REMARK 500 SER A 34 -149.99 -134.10 REMARK 500 LYS A 44 -35.71 -38.89 REMARK 500 SER A 86 -37.24 -38.49 REMARK 500 TYR A 92 -55.73 65.30 REMARK 500 LEU A 95 47.50 -91.78 REMARK 500 TYR A 106 31.39 -75.31 REMARK 500 ASN A 113 -78.15 -42.61 REMARK 500 ALA A 126 -33.86 -36.69 REMARK 500 ASN A 135 -78.28 -65.09 REMARK 500 TRP A 140 148.81 -179.85 REMARK 500 ASN A 143 -94.82 -50.47 REMARK 500 LEU A 183 29.52 -69.03 REMARK 500 ASN A 184 -56.50 -131.89 REMARK 500 SER A 187 -90.04 -31.39 REMARK 500 TYR B 20 -76.49 -68.64 REMARK 500 TYR B 92 -68.64 58.75 REMARK 500 HIS B 164 0.88 -55.78 REMARK 500 TYR C 20 -71.98 -63.74 REMARK 500 SER C 34 -135.19 -118.37 REMARK 500 LYS C 71 39.76 -69.81 REMARK 500 SER C 86 31.75 -71.86 REMARK 500 LEU C 87 -31.68 -144.48 REMARK 500 TYR C 92 -49.27 67.66 REMARK 500 PRO C 94 1.39 -60.01 REMARK 500 LYS C 108 -86.25 -37.38 REMARK 500 ASN C 110 25.57 -65.75 REMARK 500 TRP C 140 -172.62 -179.77 REMARK 500 ASN C 146 -75.30 -63.37 REMARK 500 HIS C 164 -23.80 -28.07 REMARK 500 GLU C 165 -79.91 -43.63 REMARK 500 GLN C 166 169.37 -39.81 REMARK 500 ASN C 184 -84.93 -33.02 REMARK 500 LEU C 186 -79.77 -107.77 REMARK 500 LYS C 188 81.49 -165.17 REMARK 500 SER D 34 -137.61 -94.91 REMARK 500 LYS D 67 -82.23 -64.85 REMARK 500 GLU D 68 -38.93 -23.18 REMARK 500 LYS D 73 -70.90 -49.23 REMARK 500 TYR D 92 -65.25 63.14 REMARK 500 SER D 111 -76.03 -59.74 REMARK 500 ASN D 113 -82.93 -45.65 REMARK 500 LYS D 115 -6.97 -50.96 REMARK 500 MET D 116 -0.07 -151.67 REMARK 500 LEU D 136 34.54 -75.09 REMARK 500 ASP D 144 61.23 -164.91 REMARK 500 ALA D 147 -70.37 -50.34 REMARK 500 HIS D 164 -8.78 -42.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT E 11 0.08 SIDE CHAIN REMARK 500 DA E 14 0.05 SIDE CHAIN REMARK 500 DG E 17 0.07 SIDE CHAIN REMARK 500 DT F 11 0.06 SIDE CHAIN REMARK 500 TYR A 40 0.07 SIDE CHAIN REMARK 500 TYR A 41 0.07 SIDE CHAIN REMARK 500 TYR B 41 0.07 SIDE CHAIN REMARK 500 TYR D 41 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 899 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 699 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 399 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JT6 RELATED DB: PDB REMARK 900 QACR-DEQUALINIUM COMPLEX REMARK 900 RELATED ID: 1JTY RELATED DB: PDB REMARK 900 QACR-ETHIDIUM COMPLEX REMARK 900 RELATED ID: 1JUM RELATED DB: PDB REMARK 900 QACR-BERBERINE COMPLEX REMARK 900 RELATED ID: 1JUP RELATED DB: PDB REMARK 900 QACR-MALCHITE GREEN COMPLEX REMARK 900 RELATED ID: 1JUS RELATED DB: PDB REMARK 900 QACR-RHODAMINE 6G COMPLEX DBREF 1JT0 A 1 188 UNP P0A0N4 QACR_STAAU 1 188 DBREF 1JT0 B 1 188 UNP P0A0N4 QACR_STAAU 1 188 DBREF 1JT0 C 1 188 UNP P0A0N4 QACR_STAAU 1 188 DBREF 1JT0 D 1 188 UNP P0A0N4 QACR_STAAU 1 188 DBREF 1JT0 E 7 34 PDB 1JT0 1JT0 7 34 DBREF 1JT0 F 7 34 PDB 1JT0 1JT0 7 34 SEQADV 1JT0 ALA A 72 UNP P0A0N4 CYS 72 ENGINEERED MUTATION SEQADV 1JT0 SER A 141 UNP P0A0N4 CYS 141 ENGINEERED MUTATION SEQADV 1JT0 HIS A 189 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS A 190 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS A 191 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS A 192 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS A 193 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS A 194 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 ALA B 72 UNP P0A0N4 CYS 72 ENGINEERED MUTATION SEQADV 1JT0 SER B 141 UNP P0A0N4 CYS 141 ENGINEERED MUTATION SEQADV 1JT0 HIS B 189 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS B 190 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS B 191 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS B 192 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS B 193 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS B 194 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 ALA C 72 UNP P0A0N4 CYS 72 ENGINEERED MUTATION SEQADV 1JT0 SER C 141 UNP P0A0N4 CYS 141 ENGINEERED MUTATION SEQADV 1JT0 HIS C 189 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS C 190 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS C 191 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS C 192 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS C 193 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS C 194 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 ALA D 72 UNP P0A0N4 CYS 72 ENGINEERED MUTATION SEQADV 1JT0 SER D 141 UNP P0A0N4 CYS 141 ENGINEERED MUTATION SEQADV 1JT0 HIS D 189 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS D 190 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS D 191 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS D 192 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS D 193 UNP P0A0N4 EXPRESSION TAG SEQADV 1JT0 HIS D 194 UNP P0A0N4 EXPRESSION TAG SEQRES 1 E 28 DC DT DT DA DT DA DG DA DC DC DG DA DT SEQRES 2 E 28 DC DG DA DT DC DG DG DT DC DT DA DT DA SEQRES 3 E 28 DA DG SEQRES 1 F 28 DC DT DT DA DT DA DG DA DC DC DG DA DT SEQRES 2 F 28 DC DG DA DT DC DG DG DT DC DT DA DT DA SEQRES 3 F 28 DA DG SEQRES 1 A 194 MET ASN LEU LYS ASP LYS ILE LEU GLY VAL ALA LYS GLU SEQRES 2 A 194 LEU PHE ILE LYS ASN GLY TYR ASN ALA THR THR THR GLY SEQRES 3 A 194 GLU ILE VAL LYS LEU SER GLU SER SER LYS GLY ASN LEU SEQRES 4 A 194 TYR TYR HIS PHE LYS THR LYS GLU ASN LEU PHE LEU GLU SEQRES 5 A 194 ILE LEU ASN ILE GLU GLU SER LYS TRP GLN GLU GLN TRP SEQRES 6 A 194 LYS LYS GLU GLN ILE LYS ALA LYS THR ASN ARG GLU LYS SEQRES 7 A 194 PHE TYR LEU TYR ASN GLU LEU SER LEU THR THR GLU TYR SEQRES 8 A 194 TYR TYR PRO LEU GLN ASN ALA ILE ILE GLU PHE TYR THR SEQRES 9 A 194 GLU TYR TYR LYS THR ASN SER ILE ASN GLU LYS MET ASN SEQRES 10 A 194 LYS LEU GLU ASN LYS TYR ILE ASP ALA TYR HIS VAL ILE SEQRES 11 A 194 PHE LYS GLU GLY ASN LEU ASN GLY GLU TRP SER ILE ASN SEQRES 12 A 194 ASP VAL ASN ALA VAL SER LYS ILE ALA ALA ASN ALA VAL SEQRES 13 A 194 ASN GLY ILE VAL THR PHE THR HIS GLU GLN ASN ILE ASN SEQRES 14 A 194 GLU ARG ILE LYS LEU MET ASN LYS PHE SER GLN ILE PHE SEQRES 15 A 194 LEU ASN GLY LEU SER LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 194 MET ASN LEU LYS ASP LYS ILE LEU GLY VAL ALA LYS GLU SEQRES 2 B 194 LEU PHE ILE LYS ASN GLY TYR ASN ALA THR THR THR GLY SEQRES 3 B 194 GLU ILE VAL LYS LEU SER GLU SER SER LYS GLY ASN LEU SEQRES 4 B 194 TYR TYR HIS PHE LYS THR LYS GLU ASN LEU PHE LEU GLU SEQRES 5 B 194 ILE LEU ASN ILE GLU GLU SER LYS TRP GLN GLU GLN TRP SEQRES 6 B 194 LYS LYS GLU GLN ILE LYS ALA LYS THR ASN ARG GLU LYS SEQRES 7 B 194 PHE TYR LEU TYR ASN GLU LEU SER LEU THR THR GLU TYR SEQRES 8 B 194 TYR TYR PRO LEU GLN ASN ALA ILE ILE GLU PHE TYR THR SEQRES 9 B 194 GLU TYR TYR LYS THR ASN SER ILE ASN GLU LYS MET ASN SEQRES 10 B 194 LYS LEU GLU ASN LYS TYR ILE ASP ALA TYR HIS VAL ILE SEQRES 11 B 194 PHE LYS GLU GLY ASN LEU ASN GLY GLU TRP SER ILE ASN SEQRES 12 B 194 ASP VAL ASN ALA VAL SER LYS ILE ALA ALA ASN ALA VAL SEQRES 13 B 194 ASN GLY ILE VAL THR PHE THR HIS GLU GLN ASN ILE ASN SEQRES 14 B 194 GLU ARG ILE LYS LEU MET ASN LYS PHE SER GLN ILE PHE SEQRES 15 B 194 LEU ASN GLY LEU SER LYS HIS HIS HIS HIS HIS HIS SEQRES 1 C 194 MET ASN LEU LYS ASP LYS ILE LEU GLY VAL ALA LYS GLU SEQRES 2 C 194 LEU PHE ILE LYS ASN GLY TYR ASN ALA THR THR THR GLY SEQRES 3 C 194 GLU ILE VAL LYS LEU SER GLU SER SER LYS GLY ASN LEU SEQRES 4 C 194 TYR TYR HIS PHE LYS THR LYS GLU ASN LEU PHE LEU GLU SEQRES 5 C 194 ILE LEU ASN ILE GLU GLU SER LYS TRP GLN GLU GLN TRP SEQRES 6 C 194 LYS LYS GLU GLN ILE LYS ALA LYS THR ASN ARG GLU LYS SEQRES 7 C 194 PHE TYR LEU TYR ASN GLU LEU SER LEU THR THR GLU TYR SEQRES 8 C 194 TYR TYR PRO LEU GLN ASN ALA ILE ILE GLU PHE TYR THR SEQRES 9 C 194 GLU TYR TYR LYS THR ASN SER ILE ASN GLU LYS MET ASN SEQRES 10 C 194 LYS LEU GLU ASN LYS TYR ILE ASP ALA TYR HIS VAL ILE SEQRES 11 C 194 PHE LYS GLU GLY ASN LEU ASN GLY GLU TRP SER ILE ASN SEQRES 12 C 194 ASP VAL ASN ALA VAL SER LYS ILE ALA ALA ASN ALA VAL SEQRES 13 C 194 ASN GLY ILE VAL THR PHE THR HIS GLU GLN ASN ILE ASN SEQRES 14 C 194 GLU ARG ILE LYS LEU MET ASN LYS PHE SER GLN ILE PHE SEQRES 15 C 194 LEU ASN GLY LEU SER LYS HIS HIS HIS HIS HIS HIS SEQRES 1 D 194 MET ASN LEU LYS ASP LYS ILE LEU GLY VAL ALA LYS GLU SEQRES 2 D 194 LEU PHE ILE LYS ASN GLY TYR ASN ALA THR THR THR GLY SEQRES 3 D 194 GLU ILE VAL LYS LEU SER GLU SER SER LYS GLY ASN LEU SEQRES 4 D 194 TYR TYR HIS PHE LYS THR LYS GLU ASN LEU PHE LEU GLU SEQRES 5 D 194 ILE LEU ASN ILE GLU GLU SER LYS TRP GLN GLU GLN TRP SEQRES 6 D 194 LYS LYS GLU GLN ILE LYS ALA LYS THR ASN ARG GLU LYS SEQRES 7 D 194 PHE TYR LEU TYR ASN GLU LEU SER LEU THR THR GLU TYR SEQRES 8 D 194 TYR TYR PRO LEU GLN ASN ALA ILE ILE GLU PHE TYR THR SEQRES 9 D 194 GLU TYR TYR LYS THR ASN SER ILE ASN GLU LYS MET ASN SEQRES 10 D 194 LYS LEU GLU ASN LYS TYR ILE ASP ALA TYR HIS VAL ILE SEQRES 11 D 194 PHE LYS GLU GLY ASN LEU ASN GLY GLU TRP SER ILE ASN SEQRES 12 D 194 ASP VAL ASN ALA VAL SER LYS ILE ALA ALA ASN ALA VAL SEQRES 13 D 194 ASN GLY ILE VAL THR PHE THR HIS GLU GLN ASN ILE ASN SEQRES 14 D 194 GLU ARG ILE LYS LEU MET ASN LYS PHE SER GLN ILE PHE SEQRES 15 D 194 LEU ASN GLY LEU SER LYS HIS HIS HIS HIS HIS HIS HET SO4 A 999 5 HET SO4 B 299 5 HET SO4 B 399 5 HET SO4 C 699 5 HET SO4 D 899 5 HETNAM SO4 SULFATE ION FORMUL 7 SO4 5(O4 S 2-) FORMUL 12 HOH *45(H2 O) HELIX 1 1 ASN A 2 GLY A 19 1 18 HELIX 2 2 THR A 24 GLU A 33 1 10 HELIX 3 3 SER A 35 PHE A 43 1 9 HELIX 4 4 THR A 45 GLN A 69 1 25 HELIX 5 5 ILE A 70 ALA A 72 5 3 HELIX 6 6 THR A 74 THR A 89 1 16 HELIX 7 7 LEU A 95 TYR A 106 1 12 HELIX 8 8 THR A 109 ASN A 137 1 29 HELIX 9 9 ASP A 144 PHE A 162 1 19 HELIX 10 10 ASN A 167 LEU A 186 1 20 HELIX 11 11 ASN B 2 GLY B 19 1 18 HELIX 12 12 THR B 24 GLU B 33 1 10 HELIX 13 13 SER B 35 PHE B 43 1 9 HELIX 14 14 THR B 45 GLN B 69 1 25 HELIX 15 15 THR B 74 SER B 86 1 13 HELIX 16 16 TYR B 92 PRO B 94 5 3 HELIX 17 17 LEU B 95 TYR B 106 1 12 HELIX 18 18 THR B 109 ASN B 137 1 29 HELIX 19 19 ASP B 144 PHE B 162 1 19 HELIX 20 20 ASN B 167 GLY B 185 1 19 HELIX 21 21 ASN C 2 GLY C 19 1 18 HELIX 22 22 THR C 24 GLU C 33 1 10 HELIX 23 23 SER C 35 PHE C 43 1 9 HELIX 24 24 THR C 45 GLN C 69 1 25 HELIX 25 25 THR C 74 THR C 89 1 16 HELIX 26 26 TYR C 92 PRO C 94 5 3 HELIX 27 27 LEU C 95 TYR C 107 1 13 HELIX 28 28 ASN C 110 GLU C 133 1 24 HELIX 29 29 ASP C 144 PHE C 162 1 19 HELIX 30 30 ASN C 167 GLY C 185 1 19 HELIX 31 31 ASN D 2 ASN D 18 1 17 HELIX 32 32 THR D 24 GLU D 33 1 10 HELIX 33 33 SER D 35 PHE D 43 1 9 HELIX 34 34 THR D 45 GLN D 69 1 25 HELIX 35 35 ILE D 70 ALA D 72 5 3 HELIX 36 36 THR D 74 THR D 89 1 16 HELIX 37 37 TYR D 92 PRO D 94 5 3 HELIX 38 38 LEU D 95 GLU D 105 1 11 HELIX 39 39 THR D 109 LYS D 115 1 7 HELIX 40 40 ASN D 117 LEU D 136 1 20 HELIX 41 41 ASP D 144 THR D 163 1 20 HELIX 42 42 ASN D 167 GLY D 185 1 19 SITE 1 AC1 2 LYS B 60 TYR B 91 SITE 1 AC2 2 LYS D 60 TYR D 91 SITE 1 AC3 2 LYS C 60 TYR C 91 SITE 1 AC4 2 LYS A 60 TYR A 91 SITE 1 AC5 4 ASN B 143 ASP B 144 HOH B 402 LYS D 177 CRYST1 174.700 174.700 151.950 90.00 90.00 120.00 P 65 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005724 0.003305 0.000000 0.00000 SCALE2 0.000000 0.006610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006581 0.00000 MASTER 412 0 5 42 0 0 5 6 0 0 0 66 END