HEADER OXIDOREDUCTASE 11-JUL-01 1JK9 TITLE HETERODIMER BETWEEN H48F-YSOD1 AND YCCS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: SOD1; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: COPPER CHAPERONE FOR SUPEROXIDE DISMUTASE; COMPND 10 CHAIN: B, D; COMPND 11 SYNONYM: CCS; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3D; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 4932; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS PROTEIN-PROTEIN COMPLEX, HETERODIMER, METALLOCHAPERONE, CHAPERONE, KEYWDS 2 COPPER, AMYOTROPHIC LATERAL SCLEROSIS, LOU GEHRIG'S DISEASE, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.L.LAMB,A.S.TORRES,T.V.O'HALLORAN,A.C.ROSENZWEIG REVDAT 4 27-OCT-21 1JK9 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1JK9 1 VERSN REVDAT 2 01-APR-03 1JK9 1 JRNL REVDAT 1 05-SEP-01 1JK9 0 JRNL AUTH A.L.LAMB,A.S.TORRES,T.V.O'HALLORAN,A.C.ROSENZWEIG JRNL TITL HETERODIMERIC STRUCTURE OF SUPEROXIDE DISMUTASE IN COMPLEX JRNL TITL 2 WITH ITS METALLOCHAPERONE. JRNL REF NAT.STRUCT.BIOL. V. 8 751 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11524675 JRNL DOI 10.1038/NSB0901-751 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 30885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3199 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5954 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JK9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013872. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32933 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 12.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: HETERODIMER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, AMMONIUM SULFATE, DIOXANE, PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 155.80667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.90333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.90333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 155.80667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HETERODIMER COMPRISING ONE REMARK 300 MOLECULE OF YCCS AND ONE MOLECULE OF YSOD1 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -129.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 52.04500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 90.14458 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -77.90333 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 104.09000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 389.51667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASN B 246 REMARK 465 ASN B 247 REMARK 465 ILE B 248 REMARK 465 LYS B 249 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ASN D 246 REMARK 465 ASN D 247 REMARK 465 ILE D 248 REMARK 465 LYS D 249 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 10 32.76 -67.47 REMARK 500 PHE A 45 88.03 -160.23 REMARK 500 THR A 54 -6.31 -59.07 REMARK 500 ASN A 55 35.42 -151.73 REMARK 500 PHE A 64 104.32 -51.07 REMARK 500 LYS A 68 58.65 39.79 REMARK 500 ASP A 90 -162.39 -70.45 REMARK 500 PRO A 109 -9.85 -49.25 REMARK 500 ASP A 130 -81.28 -81.67 REMARK 500 THR A 131 157.84 -30.48 REMARK 500 PRO A 142 161.99 -49.30 REMARK 500 ASP B 5 44.70 -56.12 REMARK 500 MET B 15 30.18 -148.39 REMARK 500 SER B 50 -175.82 -170.85 REMARK 500 ASN B 112 71.30 -156.10 REMARK 500 LYS B 113 118.46 -177.75 REMARK 500 PRO B 179 37.29 -76.30 REMARK 500 SER B 204 158.35 173.37 REMARK 500 SER B 205 10.73 -59.76 REMARK 500 TRP B 222 13.35 56.13 REMARK 500 LYS C 68 55.64 37.09 REMARK 500 LEU C 126 16.07 57.29 REMARK 500 LYS C 136 -68.34 -106.87 REMARK 500 PRO C 142 170.37 -54.91 REMARK 500 ASN D 4 18.13 -60.59 REMARK 500 ASP D 5 35.78 -74.18 REMARK 500 MET D 15 25.78 -153.23 REMARK 500 HIS D 16 33.05 -94.45 REMARK 500 VAL D 31 106.97 -52.04 REMARK 500 GLN D 44 50.50 37.05 REMARK 500 ASN D 77 14.87 84.49 REMARK 500 ASN D 112 38.25 -147.39 REMARK 500 LYS D 141 41.29 -142.18 REMARK 500 VAL D 143 -3.85 -58.84 REMARK 500 LEU D 165 -145.67 -64.10 REMARK 500 GLU D 202 68.04 -101.62 REMARK 500 SER D 204 42.56 152.22 REMARK 500 SER D 205 19.89 42.72 REMARK 500 GLN D 227 -18.17 -141.11 REMARK 500 THR D 232 -94.32 -144.25 REMARK 500 LEU D 244 67.09 -102.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 42 OE2 REMARK 620 2 HIS B 198 ND1 90.9 REMARK 620 3 GLU B 200 OE2 102.1 142.1 REMARK 620 4 HIS D 16 ND1 102.6 135.6 76.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 ND1 REMARK 620 2 HIS A 71 ND1 107.5 REMARK 620 3 HIS A 80 ND1 99.5 127.9 REMARK 620 4 ASP A 83 OD1 100.0 94.5 123.8 REMARK 620 5 ASP A 83 OD2 152.7 82.7 93.1 53.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 16 ND1 REMARK 620 2 GLU C 42 OE1 140.7 REMARK 620 3 GLU C 42 OE2 94.9 54.8 REMARK 620 4 HIS D 198 ND1 115.0 92.5 91.8 REMARK 620 5 GLU D 200 OE1 107.0 77.6 123.4 121.8 REMARK 620 6 GLU D 200 OE2 78.1 126.1 167.7 100.3 51.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 63 ND1 REMARK 620 2 HIS C 71 ND1 112.1 REMARK 620 3 HIS C 80 ND1 102.1 125.6 REMARK 620 4 ASP C 83 OD1 97.1 90.5 126.4 REMARK 620 5 ASP C 83 OD2 150.0 74.3 96.2 52.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 402 DBREF 1JK9 A 1 153 UNP P00445 SODC_YEAST 1 153 DBREF 1JK9 B 1 249 UNP P40202 CCS1_YEAST 1 249 DBREF 1JK9 C 1 153 UNP P00445 SODC_YEAST 1 153 DBREF 1JK9 D 1 249 UNP P40202 CCS1_YEAST 1 249 SEQADV 1JK9 PHE A 48 UNP P00445 HIS 49 ENGINEERED MUTATION SEQADV 1JK9 PHE C 48 UNP P00445 HIS 49 ENGINEERED MUTATION SEQRES 1 A 153 VAL GLN ALA VAL ALA VAL LEU LYS GLY ASP ALA GLY VAL SEQRES 2 A 153 SER GLY VAL VAL LYS PHE GLU GLN ALA SER GLU SER GLU SEQRES 3 A 153 PRO THR THR VAL SER TYR GLU ILE ALA GLY ASN SER PRO SEQRES 4 A 153 ASN ALA GLU ARG GLY PHE HIS ILE PHE GLU PHE GLY ASP SEQRES 5 A 153 ALA THR ASN GLY CYS VAL SER ALA GLY PRO HIS PHE ASN SEQRES 6 A 153 PRO PHE LYS LYS THR HIS GLY ALA PRO THR ASP GLU VAL SEQRES 7 A 153 ARG HIS VAL GLY ASP MET GLY ASN VAL LYS THR ASP GLU SEQRES 8 A 153 ASN GLY VAL ALA LYS GLY SER PHE LYS ASP SER LEU ILE SEQRES 9 A 153 LYS LEU ILE GLY PRO THR SER VAL VAL GLY ARG SER VAL SEQRES 10 A 153 VAL ILE HIS ALA GLY GLN ASP ASP LEU GLY LYS GLY ASP SEQRES 11 A 153 THR GLU GLU SER LEU LYS THR GLY ASN ALA GLY PRO ARG SEQRES 12 A 153 PRO ALA CYS GLY VAL ILE GLY LEU THR ASN SEQRES 1 B 249 MET THR THR ASN ASP THR TYR GLU ALA THR TYR ALA ILE SEQRES 2 B 249 PRO MET HIS CYS GLU ASN CYS VAL ASN ASP ILE LYS ALA SEQRES 3 B 249 CYS LEU LYS ASN VAL PRO GLY ILE ASN SER LEU ASN PHE SEQRES 4 B 249 ASP ILE GLU GLN GLN ILE MET SER VAL GLU SER SER VAL SEQRES 5 B 249 ALA PRO SER THR ILE ILE ASN THR LEU ARG ASN CYS GLY SEQRES 6 B 249 LYS ASP ALA ILE ILE ARG GLY ALA GLY LYS PRO ASN SER SEQRES 7 B 249 SER ALA VAL ALA ILE LEU GLU THR PHE GLN LYS TYR THR SEQRES 8 B 249 ILE ASP GLN LYS LYS ASP THR ALA VAL ARG GLY LEU ALA SEQRES 9 B 249 ARG ILE VAL GLN VAL GLY GLU ASN LYS THR LEU PHE ASP SEQRES 10 B 249 ILE THR VAL ASN GLY VAL PRO GLU ALA GLY ASN TYR HIS SEQRES 11 B 249 ALA SER ILE HIS GLU LYS GLY ASP VAL SER LYS GLY VAL SEQRES 12 B 249 GLU SER THR GLY LYS VAL TRP HIS LYS PHE ASP GLU PRO SEQRES 13 B 249 ILE GLU CYS PHE ASN GLU SER ASP LEU GLY LYS ASN LEU SEQRES 14 B 249 TYR SER GLY LYS THR PHE LEU SER ALA PRO LEU PRO THR SEQRES 15 B 249 TRP GLN LEU ILE GLY ARG SER PHE VAL ILE SER LYS SER SEQRES 16 B 249 LEU ASN HIS PRO GLU ASN GLU PRO SER SER VAL LYS ASP SEQRES 17 B 249 TYR SER PHE LEU GLY VAL ILE ALA ARG SER ALA GLY VAL SEQRES 18 B 249 TRP GLU ASN ASN LYS GLN VAL CYS ALA CYS THR GLY LYS SEQRES 19 B 249 THR VAL TRP GLU GLU ARG LYS ASP ALA LEU ALA ASN ASN SEQRES 20 B 249 ILE LYS SEQRES 1 C 153 VAL GLN ALA VAL ALA VAL LEU LYS GLY ASP ALA GLY VAL SEQRES 2 C 153 SER GLY VAL VAL LYS PHE GLU GLN ALA SER GLU SER GLU SEQRES 3 C 153 PRO THR THR VAL SER TYR GLU ILE ALA GLY ASN SER PRO SEQRES 4 C 153 ASN ALA GLU ARG GLY PHE HIS ILE PHE GLU PHE GLY ASP SEQRES 5 C 153 ALA THR ASN GLY CYS VAL SER ALA GLY PRO HIS PHE ASN SEQRES 6 C 153 PRO PHE LYS LYS THR HIS GLY ALA PRO THR ASP GLU VAL SEQRES 7 C 153 ARG HIS VAL GLY ASP MET GLY ASN VAL LYS THR ASP GLU SEQRES 8 C 153 ASN GLY VAL ALA LYS GLY SER PHE LYS ASP SER LEU ILE SEQRES 9 C 153 LYS LEU ILE GLY PRO THR SER VAL VAL GLY ARG SER VAL SEQRES 10 C 153 VAL ILE HIS ALA GLY GLN ASP ASP LEU GLY LYS GLY ASP SEQRES 11 C 153 THR GLU GLU SER LEU LYS THR GLY ASN ALA GLY PRO ARG SEQRES 12 C 153 PRO ALA CYS GLY VAL ILE GLY LEU THR ASN SEQRES 1 D 249 MET THR THR ASN ASP THR TYR GLU ALA THR TYR ALA ILE SEQRES 2 D 249 PRO MET HIS CYS GLU ASN CYS VAL ASN ASP ILE LYS ALA SEQRES 3 D 249 CYS LEU LYS ASN VAL PRO GLY ILE ASN SER LEU ASN PHE SEQRES 4 D 249 ASP ILE GLU GLN GLN ILE MET SER VAL GLU SER SER VAL SEQRES 5 D 249 ALA PRO SER THR ILE ILE ASN THR LEU ARG ASN CYS GLY SEQRES 6 D 249 LYS ASP ALA ILE ILE ARG GLY ALA GLY LYS PRO ASN SER SEQRES 7 D 249 SER ALA VAL ALA ILE LEU GLU THR PHE GLN LYS TYR THR SEQRES 8 D 249 ILE ASP GLN LYS LYS ASP THR ALA VAL ARG GLY LEU ALA SEQRES 9 D 249 ARG ILE VAL GLN VAL GLY GLU ASN LYS THR LEU PHE ASP SEQRES 10 D 249 ILE THR VAL ASN GLY VAL PRO GLU ALA GLY ASN TYR HIS SEQRES 11 D 249 ALA SER ILE HIS GLU LYS GLY ASP VAL SER LYS GLY VAL SEQRES 12 D 249 GLU SER THR GLY LYS VAL TRP HIS LYS PHE ASP GLU PRO SEQRES 13 D 249 ILE GLU CYS PHE ASN GLU SER ASP LEU GLY LYS ASN LEU SEQRES 14 D 249 TYR SER GLY LYS THR PHE LEU SER ALA PRO LEU PRO THR SEQRES 15 D 249 TRP GLN LEU ILE GLY ARG SER PHE VAL ILE SER LYS SER SEQRES 16 D 249 LEU ASN HIS PRO GLU ASN GLU PRO SER SER VAL LYS ASP SEQRES 17 D 249 TYR SER PHE LEU GLY VAL ILE ALA ARG SER ALA GLY VAL SEQRES 18 D 249 TRP GLU ASN ASN LYS GLN VAL CYS ALA CYS THR GLY LYS SEQRES 19 D 249 THR VAL TRP GLU GLU ARG LYS ASP ALA LEU ALA ASN ASN SEQRES 20 D 249 ILE LYS HET ZN A 301 1 HET SO4 A 401 5 HET ZN B 303 1 HET ZN C 302 1 HET SO4 C 402 5 HET ZN D 304 1 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 5 ZN 4(ZN 2+) FORMUL 6 SO4 2(O4 S 2-) FORMUL 11 HOH *11(H2 O) HELIX 1 1 GLY A 56 GLY A 61 1 6 HELIX 2 2 GLU A 132 LYS A 136 5 5 HELIX 3 3 ASN B 19 LYS B 29 1 11 HELIX 4 4 ALA B 53 ASN B 63 1 11 HELIX 5 5 LYS B 141 GLY B 147 5 7 HELIX 6 6 PRO B 181 ILE B 186 1 6 HELIX 7 7 HIS B 198 GLU B 202 5 5 HELIX 8 8 THR B 235 LEU B 244 1 10 HELIX 9 9 ASN C 55 GLY C 61 1 7 HELIX 10 10 CYS D 20 LYS D 29 1 10 HELIX 11 11 ILE D 41 GLN D 43 5 3 HELIX 12 12 ALA D 53 ASN D 63 1 11 HELIX 13 13 LYS D 141 SER D 145 5 5 HELIX 14 14 PRO D 181 LEU D 185 5 5 HELIX 15 15 HIS D 198 GLU D 202 5 5 HELIX 16 16 THR D 235 LEU D 244 1 10 SHEET 1 A 5 ALA A 95 ASP A 101 0 SHEET 2 A 5 THR A 28 ALA A 35 -1 O THR A 28 N ASP A 101 SHEET 3 A 5 SER A 14 GLU A 20 -1 O SER A 14 N ALA A 35 SHEET 4 A 5 GLN A 2 LEU A 7 -1 O ALA A 3 N PHE A 19 SHEET 5 A 5 GLY A 150 THR A 152 -1 N GLY A 150 O VAL A 4 SHEET 1 B 4 ALA A 145 VAL A 148 0 SHEET 2 B 4 SER A 116 ILE A 119 -1 N VAL A 117 O GLY A 147 SHEET 3 B 4 GLU A 42 PHE A 48 -1 O HIS A 46 N VAL A 118 SHEET 4 B 4 ASP A 83 LYS A 88 -1 N MET A 84 O PHE A 45 SHEET 1 C 4 ILE B 69 ALA B 73 0 SHEET 2 C 4 TYR B 7 ALA B 12 -1 O THR B 10 N ARG B 71 SHEET 3 C 4 ILE B 45 SER B 50 -1 N MET B 46 O TYR B 11 SHEET 4 C 4 ILE B 34 ASP B 40 -1 N ASN B 35 O GLU B 49 SHEET 1 D13 ASN B 161 GLU B 162 0 SHEET 2 D13 TYR B 170 ALA B 178 -1 N SER B 171 O ASN B 161 SHEET 3 D13 LYS B 113 VAL B 123 -1 N THR B 114 O ALA B 178 SHEET 4 D13 VAL B 100 GLY B 110 -1 O ARG B 101 N ASN B 121 SHEET 5 D13 SER B 79 THR B 86 -1 O ALA B 80 N ILE B 106 SHEET 6 D13 ALA B 216 ARG B 217 -1 N ALA B 216 O VAL B 81 SHEET 7 D13 SER B 79 THR B 86 -1 O VAL B 81 N ALA B 216 SHEET 8 D13 ASP B 208 VAL B 214 -1 O LEU B 212 N GLU B 85 SHEET 9 D13 SER B 189 SER B 195 -1 N PHE B 190 O GLY B 213 SHEET 10 D13 GLY B 127 HIS B 134 -1 N HIS B 130 O SER B 193 SHEET 11 D13 VAL B 149 LYS B 152 -1 N TRP B 150 O ILE B 133 SHEET 12 D13 GLY B 127 HIS B 134 -1 O ILE B 133 N TRP B 150 SHEET 13 D13 ILE B 157 CYS B 159 -1 N ILE B 157 O TYR B 129 SHEET 1 E 8 ALA C 95 ASP C 101 0 SHEET 2 E 8 THR C 28 ALA C 35 -1 N THR C 28 O ASP C 101 SHEET 3 E 8 SER C 14 GLU C 20 -1 O SER C 14 N ALA C 35 SHEET 4 E 8 GLN C 2 LEU C 7 -1 O ALA C 3 N PHE C 19 SHEET 5 E 8 ALA C 145 LEU C 151 -1 O VAL C 148 N VAL C 6 SHEET 6 E 8 SER C 116 ILE C 119 -1 N VAL C 117 O GLY C 147 SHEET 7 E 8 GLU C 42 PHE C 48 -1 O HIS C 46 N VAL C 118 SHEET 8 E 8 ASP C 83 LYS C 88 -1 N MET C 84 O PHE C 45 SHEET 1 F 4 ILE D 69 ALA D 73 0 SHEET 2 F 4 TYR D 7 ALA D 12 -1 O THR D 10 N ARG D 71 SHEET 3 F 4 ILE D 45 SER D 50 -1 N MET D 46 O TYR D 11 SHEET 4 F 4 ILE D 34 ASP D 40 -1 N ASN D 35 O GLU D 49 SHEET 1 G13 ASP D 208 VAL D 214 0 SHEET 2 G13 SER D 79 THR D 86 -1 N GLU D 85 O LEU D 212 SHEET 3 G13 ALA D 216 ARG D 217 -1 N ALA D 216 O VAL D 81 SHEET 4 G13 SER D 79 THR D 86 -1 O VAL D 81 N ALA D 216 SHEET 5 G13 VAL D 100 GLY D 110 -1 N ARG D 101 O LEU D 84 SHEET 6 G13 LYS D 113 VAL D 123 -1 O LYS D 113 N VAL D 109 SHEET 7 G13 TYR D 170 ALA D 178 -1 N TYR D 170 O VAL D 123 SHEET 8 G13 ILE D 157 GLU D 162 -1 O GLU D 158 N LYS D 173 SHEET 9 G13 GLY D 127 HIS D 134 -1 O GLY D 127 N CYS D 159 SHEET 10 G13 VAL D 149 LYS D 152 -1 N TRP D 150 O ILE D 133 SHEET 11 G13 GLY D 127 HIS D 134 -1 N ILE D 133 O HIS D 151 SHEET 12 G13 SER D 189 SER D 195 -1 O SER D 189 N HIS D 134 SHEET 13 G13 ASP D 208 VAL D 214 -1 N TYR D 209 O LYS D 194 SSBOND 1 CYS A 57 CYS B 229 1555 1555 2.03 SSBOND 2 CYS C 57 CYS D 229 1555 1555 2.04 LINK OE2 GLU A 42 ZN ZN D 304 1555 1555 2.16 LINK ND1 HIS A 63 ZN ZN A 301 1555 1555 2.28 LINK ND1 HIS A 71 ZN ZN A 301 1555 1555 2.17 LINK ND1 HIS A 80 ZN ZN A 301 1555 1555 2.20 LINK OD1 ASP A 83 ZN ZN A 301 1555 1555 2.04 LINK OD2 ASP A 83 ZN ZN A 301 1555 1555 2.67 LINK ND1 HIS B 16 ZN ZN B 303 1555 1555 2.16 LINK ND1 HIS B 198 ZN ZN D 304 6656 1555 2.21 LINK OE2 GLU B 200 ZN ZN D 304 6656 1555 2.04 LINK ZN ZN B 303 OE1 GLU C 42 1555 1555 2.53 LINK ZN ZN B 303 OE2 GLU C 42 1555 1555 2.22 LINK ZN ZN B 303 ND1 HIS D 198 1555 4457 2.11 LINK ZN ZN B 303 OE1 GLU D 200 1555 4457 2.65 LINK ZN ZN B 303 OE2 GLU D 200 1555 4457 2.38 LINK ND1 HIS C 63 ZN ZN C 302 1555 1555 2.24 LINK ND1 HIS C 71 ZN ZN C 302 1555 1555 2.21 LINK ND1 HIS C 80 ZN ZN C 302 1555 1555 2.08 LINK OD1 ASP C 83 ZN ZN C 302 1555 1555 2.09 LINK OD2 ASP C 83 ZN ZN C 302 1555 1555 2.68 LINK ND1 HIS D 16 ZN ZN D 304 1555 1555 2.09 SITE 1 AC1 4 HIS A 63 HIS A 71 HIS A 80 ASP A 83 SITE 1 AC2 4 HIS C 63 HIS C 71 HIS C 80 ASP C 83 SITE 1 AC3 4 HIS B 16 GLU C 42 HIS D 198 GLU D 200 SITE 1 AC4 4 GLU A 42 HIS B 198 GLU B 200 HIS D 16 SITE 1 AC5 6 PHE A 48 HIS A 120 ARG A 143 LYS B 226 SITE 2 AC5 6 CYS B 229 ALA B 230 SITE 1 AC6 5 PHE C 48 ARG C 143 LYS D 226 CYS D 229 SITE 2 AC6 5 ALA D 230 CRYST1 104.090 104.090 233.710 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009607 0.005547 0.000000 0.00000 SCALE2 0.000000 0.011093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004279 0.00000 MASTER 411 0 6 16 51 0 8 6 0 0 0 64 END