HEADER TRANSLATION 02-JUL-01 1JIH TITLE YEAST DNA POLYMERASE ETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE ETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (RESIDUES 1-531); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: RAD30; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS DNA POLYMERASE, TRANSLESION, YEAST, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR J.TRINCAO,R.E.JOHNSON,C.R.ESCALANTE,S.PRAKASH,L.PRAKASH, AUTHOR 2 A.K.AGGARWAL REVDAT 3 24-FEB-09 1JIH 1 VERSN REVDAT 2 18-APR-06 1JIH 1 REMARK DBREF SEQRES MASTER REVDAT 1 09-JAN-02 1JIH 0 JRNL AUTH J.TRINCAO,R.E.JOHNSON,C.R.ESCALANTE,S.PRAKASH, JRNL AUTH 2 L.PRAKASH,A.K.AGGARWAL JRNL TITL STRUCTURE OF THE CATALYTIC CORE OF S. CEREVISIAE JRNL TITL 2 DNA POLYMERASE ETA: IMPLICATIONS FOR TRANSLESION JRNL TITL 3 DNA SYNTHESIS JRNL REF MOL.CELL V. 8 417 2001 JRNL REFN ISSN 1097-2765 JRNL PMID 11545743 JRNL DOI 10.1016/S1097-2765(01)00306-9 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.4 REMARK 3 NUMBER OF REFLECTIONS : 68697 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 6979 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7894 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 516 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.11800 REMARK 3 B22 (A**2) : -1.11800 REMARK 3 B33 (A**2) : 2.23500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.26 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.337 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.174 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.265 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.204 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JIH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-01. REMARK 100 THE RCSB ID CODE IS RCSB013809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-01; 06-DEC-00 REMARK 200 TEMPERATURE (KELVIN) : 163; 163 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; NSLS REMARK 200 BEAMLINE : 31-ID; X4A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958,0.97941,0.96482; REMARK 200 0.96675 REMARK 200 MONOCHROMATOR : UNDULATOR; SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68697 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 19.000 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 50.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 19.00 REMARK 200 R MERGE FOR SHELL (I) : 0.07400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 17.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 20K, AMMONIUM ACETATE, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 146.15000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.55000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.07500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.55000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 219.22500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.55000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.55000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.07500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.55000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.55000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 219.22500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 146.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 510 REMARK 465 LEU A 511 REMARK 465 GLN A 512 REMARK 465 LYS A 513 REMARK 465 ASP B 510 REMARK 465 LEU B 511 REMARK 465 GLN B 512 REMARK 465 LYS B 513 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 GLN A 113 CG CD OE1 NE2 REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 LYS A 314 CG CD CE NZ REMARK 470 GLU A 344 CG CD OE1 OE2 REMARK 470 ARG A 389 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 391 CG1 CG2 REMARK 470 VAL A 392 CG1 CG2 REMARK 470 LYS A 393 CG CD CE NZ REMARK 470 ARG A 402 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 436 CG CD CE NZ REMARK 470 ILE A 439 CG1 CG2 CD1 REMARK 470 ARG A 441 CG CD NE CZ NH1 NH2 REMARK 470 THR A 442 OG1 CG2 REMARK 470 GLU A 453 CG CD OE1 OE2 REMARK 470 ARG A 456 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 463 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 464 CG CD CE NZ REMARK 470 ILE A 466 CG1 CG2 CD1 REMARK 470 GLN A 469 CG CD OE1 NE2 REMARK 470 LEU A 474 CG CD1 CD2 REMARK 470 LYS A 475 CG CD CE NZ REMARK 470 LYS A 479 CG CD CE NZ REMARK 470 ASP A 483 CG OD1 OD2 REMARK 470 LYS A 487 CG CD CE NZ REMARK 470 LYS A 489 CG CD CE NZ REMARK 470 ASN A 490 CG OD1 ND2 REMARK 470 LYS A 491 CG CD CE NZ REMARK 470 LYS A 498 CG CD CE NZ REMARK 470 ASP A 507 CG OD1 OD2 REMARK 470 ILE A 508 CG1 CG2 CD1 REMARK 470 ILE A 509 CG1 CG2 CD1 REMARK 470 THR B 307 OG1 CG2 REMARK 470 ILE B 317 CG1 CG2 CD1 REMARK 470 LEU B 320 CG CD1 CD2 REMARK 470 LEU B 322 CG CD1 CD2 REMARK 470 HIS B 324 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 325 CG CD OE1 OE2 REMARK 470 ASP B 337 CG OD1 OD2 REMARK 470 LYS B 351 CG CD CE NZ REMARK 470 ASP B 354 CG OD1 OD2 REMARK 470 ASP B 356 CG OD1 OD2 REMARK 470 ARG B 357 CG CD NE CZ NH1 NH2 REMARK 470 SER B 360 OG REMARK 470 LEU B 365 CG CD1 CD2 REMARK 470 LYS B 366 CG CD CE NZ REMARK 470 GLU B 372 CG CD OE1 OE2 REMARK 470 ARG B 389 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 464 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 57 N ASN A 57 CA 0.305 REMARK 500 ASN B 57 N ASN B 57 CA 0.247 REMARK 500 SER B 327 N SER B 327 CA 0.325 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 57 N - CA - CB ANGL. DEV. = -20.9 DEGREES REMARK 500 ASN A 57 N - CA - C ANGL. DEV. = 23.5 DEGREES REMARK 500 ASN A 57 C - N - CA ANGL. DEV. = -23.1 DEGREES REMARK 500 TYR A 494 N - CA - C ANGL. DEV. = 18.8 DEGREES REMARK 500 PRO A 495 C - N - CA ANGL. DEV. = -17.9 DEGREES REMARK 500 ASN B 57 N - CA - CB ANGL. DEV. = -17.3 DEGREES REMARK 500 ASN B 57 C - N - CA ANGL. DEV. = -22.0 DEGREES REMARK 500 SER B 327 N - CA - CB ANGL. DEV. = -14.8 DEGREES REMARK 500 SER B 327 C - N - CA ANGL. DEV. = -24.2 DEGREES REMARK 500 LEU B 447 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 TYR B 494 N - CA - CB ANGL. DEV. = 16.0 DEGREES REMARK 500 TYR B 494 N - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 56 -149.30 53.39 REMARK 500 ASN A 198 38.64 -92.03 REMARK 500 PHE A 222 108.25 -54.71 REMARK 500 ASN A 223 59.02 -152.59 REMARK 500 SER A 265 -165.68 -164.79 REMARK 500 PRO A 280 -106.43 -68.47 REMARK 500 TRP A 306 -79.55 -17.77 REMARK 500 ARG A 389 145.79 -19.81 REMARK 500 TYR A 463 77.01 -155.68 REMARK 500 LYS A 464 25.59 -70.76 REMARK 500 ILE A 466 171.76 -52.99 REMARK 500 ASN A 467 93.86 -15.64 REMARK 500 GLN A 469 -51.34 -23.49 REMARK 500 SER A 470 -71.32 -48.09 REMARK 500 ASN A 490 79.72 -114.01 REMARK 500 SER A 492 92.45 -69.71 REMARK 500 TYR A 493 -70.95 -103.43 REMARK 500 TRP B 56 -145.98 52.57 REMARK 500 HIS B 105 73.05 -119.29 REMARK 500 ASP B 114 111.74 -38.35 REMARK 500 LYS B 117 53.76 -108.14 REMARK 500 SER B 265 -164.24 -160.50 REMARK 500 PRO B 280 -109.44 -50.44 REMARK 500 TRP B 306 -71.46 -42.39 REMARK 500 LEU B 312 7.85 -61.88 REMARK 500 LEU B 320 77.26 43.66 REMARK 500 LEU B 322 100.86 -58.48 REMARK 500 PRO B 323 -86.45 -38.76 REMARK 500 HIS B 324 46.14 -83.24 REMARK 500 THR B 359 -95.89 -50.10 REMARK 500 SER B 360 87.33 -55.20 REMARK 500 ASP B 363 105.25 -39.68 REMARK 500 LYS B 366 47.41 -106.23 REMARK 500 TYR B 493 -72.00 -144.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 569 DISTANCE = 14.06 ANGSTROMS REMARK 525 HOH B 595 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B 616 DISTANCE = 10.30 ANGSTROMS REMARK 525 HOH A 624 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH B 627 DISTANCE = 8.27 ANGSTROMS REMARK 525 HOH B 637 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH A 646 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH A 649 DISTANCE = 9.61 ANGSTROMS REMARK 525 HOH A 654 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH B 731 DISTANCE = 13.16 ANGSTROMS DBREF 1JIH A 1 513 UNP Q04049 Q04049_YEAST 1 513 DBREF 1JIH B 1 513 UNP Q04049 Q04049_YEAST 1 513 SEQRES 1 A 513 MET SER LYS PHE THR TRP LYS GLU LEU ILE GLN LEU GLY SEQRES 2 A 513 SER PRO SER LYS ALA TYR GLU SER SER LEU ALA CYS ILE SEQRES 3 A 513 ALA HIS ILE ASP MET ASN ALA PHE PHE ALA GLN VAL GLU SEQRES 4 A 513 GLN MET ARG CYS GLY LEU SER LYS GLU ASP PRO VAL VAL SEQRES 5 A 513 CYS VAL GLN TRP ASN SER ILE ILE ALA VAL SER TYR ALA SEQRES 6 A 513 ALA ARG LYS TYR GLY ILE SER ARG MET ASP THR ILE GLN SEQRES 7 A 513 GLU ALA LEU LYS LYS CYS SER ASN LEU ILE PRO ILE HIS SEQRES 8 A 513 THR ALA VAL PHE LYS LYS GLY GLU ASP PHE TRP GLN TYR SEQRES 9 A 513 HIS ASP GLY CYS GLY SER TRP VAL GLN ASP PRO ALA LYS SEQRES 10 A 513 GLN ILE SER VAL GLU ASP HIS LYS VAL SER LEU GLU PRO SEQRES 11 A 513 TYR ARG ARG GLU SER ARG LYS ALA LEU LYS ILE PHE LYS SEQRES 12 A 513 SER ALA CYS ASP LEU VAL GLU ARG ALA SER ILE ASP GLU SEQRES 13 A 513 VAL PHE LEU ASP LEU GLY ARG ILE CYS PHE ASN MET LEU SEQRES 14 A 513 MET PHE ASP ASN GLU TYR GLU LEU THR GLY ASP LEU LYS SEQRES 15 A 513 LEU LYS ASP ALA LEU SER ASN ILE ARG GLU ALA PHE ILE SEQRES 16 A 513 GLY GLY ASN TYR ASP ILE ASN SER HIS LEU PRO LEU ILE SEQRES 17 A 513 PRO GLU LYS ILE LYS SER LEU LYS PHE GLU GLY ASP VAL SEQRES 18 A 513 PHE ASN PRO GLU GLY ARG ASP LEU ILE THR ASP TRP ASP SEQRES 19 A 513 ASP VAL ILE LEU ALA LEU GLY SER GLN VAL CYS LYS GLY SEQRES 20 A 513 ILE ARG ASP SER ILE LYS ASP ILE LEU GLY TYR THR THR SEQRES 21 A 513 SER CYS GLY LEU SER SER THR LYS ASN VAL CYS LYS LEU SEQRES 22 A 513 ALA SER ASN TYR LYS LYS PRO ASP ALA GLN THR ILE VAL SEQRES 23 A 513 LYS ASN ASP CYS LEU LEU ASP PHE LEU ASP CYS GLY LYS SEQRES 24 A 513 PHE GLU ILE THR SER PHE TRP THR LEU GLY GLY VAL LEU SEQRES 25 A 513 GLY LYS GLU LEU ILE ASP VAL LEU ASP LEU PRO HIS GLU SEQRES 26 A 513 ASN SER ILE LYS HIS ILE ARG GLU THR TRP PRO ASP ASN SEQRES 27 A 513 ALA GLY GLN LEU LYS GLU PHE LEU ASP ALA LYS VAL LYS SEQRES 28 A 513 GLN SER ASP TYR ASP ARG SER THR SER ASN ILE ASP PRO SEQRES 29 A 513 LEU LYS THR ALA ASP LEU ALA GLU LYS LEU PHE LYS LEU SEQRES 30 A 513 SER ARG GLY ARG TYR GLY LEU PRO LEU SER SER ARG PRO SEQRES 31 A 513 VAL VAL LYS SER MET MET SER ASN LYS ASN LEU ARG GLY SEQRES 32 A 513 LYS SER CYS ASN SER ILE VAL ASP CYS ILE SER TRP LEU SEQRES 33 A 513 GLU VAL PHE CYS ALA GLU LEU THR SER ARG ILE GLN ASP SEQRES 34 A 513 LEU GLU GLN GLU TYR ASN LYS ILE VAL ILE PRO ARG THR SEQRES 35 A 513 VAL SER ILE SER LEU LYS THR LYS SER TYR GLU VAL TYR SEQRES 36 A 513 ARG LYS SER GLY PRO VAL ALA TYR LYS GLY ILE ASN PHE SEQRES 37 A 513 GLN SER HIS GLU LEU LEU LYS VAL GLY ILE LYS PHE VAL SEQRES 38 A 513 THR ASP LEU ASP ILE LYS GLY LYS ASN LYS SER TYR TYR SEQRES 39 A 513 PRO LEU THR LYS LEU SER MET THR ILE THR ASN PHE ASP SEQRES 40 A 513 ILE ILE ASP LEU GLN LYS SEQRES 1 B 513 MET SER LYS PHE THR TRP LYS GLU LEU ILE GLN LEU GLY SEQRES 2 B 513 SER PRO SER LYS ALA TYR GLU SER SER LEU ALA CYS ILE SEQRES 3 B 513 ALA HIS ILE ASP MET ASN ALA PHE PHE ALA GLN VAL GLU SEQRES 4 B 513 GLN MET ARG CYS GLY LEU SER LYS GLU ASP PRO VAL VAL SEQRES 5 B 513 CYS VAL GLN TRP ASN SER ILE ILE ALA VAL SER TYR ALA SEQRES 6 B 513 ALA ARG LYS TYR GLY ILE SER ARG MET ASP THR ILE GLN SEQRES 7 B 513 GLU ALA LEU LYS LYS CYS SER ASN LEU ILE PRO ILE HIS SEQRES 8 B 513 THR ALA VAL PHE LYS LYS GLY GLU ASP PHE TRP GLN TYR SEQRES 9 B 513 HIS ASP GLY CYS GLY SER TRP VAL GLN ASP PRO ALA LYS SEQRES 10 B 513 GLN ILE SER VAL GLU ASP HIS LYS VAL SER LEU GLU PRO SEQRES 11 B 513 TYR ARG ARG GLU SER ARG LYS ALA LEU LYS ILE PHE LYS SEQRES 12 B 513 SER ALA CYS ASP LEU VAL GLU ARG ALA SER ILE ASP GLU SEQRES 13 B 513 VAL PHE LEU ASP LEU GLY ARG ILE CYS PHE ASN MET LEU SEQRES 14 B 513 MET PHE ASP ASN GLU TYR GLU LEU THR GLY ASP LEU LYS SEQRES 15 B 513 LEU LYS ASP ALA LEU SER ASN ILE ARG GLU ALA PHE ILE SEQRES 16 B 513 GLY GLY ASN TYR ASP ILE ASN SER HIS LEU PRO LEU ILE SEQRES 17 B 513 PRO GLU LYS ILE LYS SER LEU LYS PHE GLU GLY ASP VAL SEQRES 18 B 513 PHE ASN PRO GLU GLY ARG ASP LEU ILE THR ASP TRP ASP SEQRES 19 B 513 ASP VAL ILE LEU ALA LEU GLY SER GLN VAL CYS LYS GLY SEQRES 20 B 513 ILE ARG ASP SER ILE LYS ASP ILE LEU GLY TYR THR THR SEQRES 21 B 513 SER CYS GLY LEU SER SER THR LYS ASN VAL CYS LYS LEU SEQRES 22 B 513 ALA SER ASN TYR LYS LYS PRO ASP ALA GLN THR ILE VAL SEQRES 23 B 513 LYS ASN ASP CYS LEU LEU ASP PHE LEU ASP CYS GLY LYS SEQRES 24 B 513 PHE GLU ILE THR SER PHE TRP THR LEU GLY GLY VAL LEU SEQRES 25 B 513 GLY LYS GLU LEU ILE ASP VAL LEU ASP LEU PRO HIS GLU SEQRES 26 B 513 ASN SER ILE LYS HIS ILE ARG GLU THR TRP PRO ASP ASN SEQRES 27 B 513 ALA GLY GLN LEU LYS GLU PHE LEU ASP ALA LYS VAL LYS SEQRES 28 B 513 GLN SER ASP TYR ASP ARG SER THR SER ASN ILE ASP PRO SEQRES 29 B 513 LEU LYS THR ALA ASP LEU ALA GLU LYS LEU PHE LYS LEU SEQRES 30 B 513 SER ARG GLY ARG TYR GLY LEU PRO LEU SER SER ARG PRO SEQRES 31 B 513 VAL VAL LYS SER MET MET SER ASN LYS ASN LEU ARG GLY SEQRES 32 B 513 LYS SER CYS ASN SER ILE VAL ASP CYS ILE SER TRP LEU SEQRES 33 B 513 GLU VAL PHE CYS ALA GLU LEU THR SER ARG ILE GLN ASP SEQRES 34 B 513 LEU GLU GLN GLU TYR ASN LYS ILE VAL ILE PRO ARG THR SEQRES 35 B 513 VAL SER ILE SER LEU LYS THR LYS SER TYR GLU VAL TYR SEQRES 36 B 513 ARG LYS SER GLY PRO VAL ALA TYR LYS GLY ILE ASN PHE SEQRES 37 B 513 GLN SER HIS GLU LEU LEU LYS VAL GLY ILE LYS PHE VAL SEQRES 38 B 513 THR ASP LEU ASP ILE LYS GLY LYS ASN LYS SER TYR TYR SEQRES 39 B 513 PRO LEU THR LYS LEU SER MET THR ILE THR ASN PHE ASP SEQRES 40 B 513 ILE ILE ASP LEU GLN LYS FORMUL 3 HOH *516(H2 O) HELIX 1 1 THR A 5 GLN A 11 1 7 HELIX 2 2 LEU A 12 SER A 14 5 3 HELIX 3 3 LYS A 17 SER A 21 5 5 HELIX 4 4 ALA A 33 CYS A 43 1 11 HELIX 5 5 SER A 63 LYS A 68 1 6 HELIX 6 6 THR A 76 CYS A 84 1 9 HELIX 7 7 LEU A 128 CYS A 146 1 19 HELIX 8 8 LEU A 161 ASP A 172 1 12 HELIX 9 9 LYS A 182 LEU A 187 1 6 HELIX 10 10 LEU A 187 GLY A 197 1 11 HELIX 11 11 PRO A 209 LEU A 215 5 7 HELIX 12 12 ASP A 232 GLY A 257 1 26 HELIX 13 13 THR A 267 ASN A 276 1 10 HELIX 14 14 LYS A 287 ASP A 289 5 3 HELIX 15 15 CYS A 290 ASP A 296 1 7 HELIX 16 16 GLU A 301 PHE A 305 5 5 HELIX 17 17 PHE A 305 GLY A 309 5 5 HELIX 18 18 GLY A 310 LEU A 320 1 11 HELIX 19 19 ASN A 326 TRP A 335 1 10 HELIX 20 20 ASN A 338 LYS A 351 1 14 HELIX 21 21 LYS A 366 SER A 378 1 13 HELIX 22 22 SER A 408 TYR A 434 1 27 HELIX 23 23 PHE A 468 GLY A 488 1 21 HELIX 24 24 THR B 5 GLN B 11 1 7 HELIX 25 25 LEU B 12 SER B 14 5 3 HELIX 26 26 LYS B 17 SER B 21 5 5 HELIX 27 27 ALA B 33 CYS B 43 1 11 HELIX 28 28 SER B 63 LYS B 68 1 6 HELIX 29 29 THR B 76 LYS B 82 1 7 HELIX 30 30 LEU B 128 CYS B 146 1 19 HELIX 31 31 LEU B 161 ASP B 172 1 12 HELIX 32 32 LEU B 183 GLY B 197 1 15 HELIX 33 33 PRO B 209 LEU B 215 5 7 HELIX 34 34 ASP B 232 GLY B 257 1 26 HELIX 35 35 THR B 267 LYS B 278 1 12 HELIX 36 36 LYS B 287 ASP B 289 5 3 HELIX 37 37 CYS B 290 ASP B 296 1 7 HELIX 38 38 GLU B 301 PHE B 305 5 5 HELIX 39 39 GLY B 310 GLY B 313 5 4 HELIX 40 40 LYS B 314 VAL B 319 1 6 HELIX 41 41 ASN B 326 TRP B 335 1 10 HELIX 42 42 ASN B 338 LYS B 351 1 14 HELIX 43 43 ASP B 363 LEU B 365 5 3 HELIX 44 44 LYS B 366 SER B 378 1 13 HELIX 45 45 SER B 408 ASN B 435 1 28 HELIX 46 46 GLY B 465 ASN B 467 5 3 HELIX 47 47 PHE B 468 GLY B 488 1 21 SHEET 1 A 6 VAL A 149 SER A 153 0 SHEET 2 A 6 GLU A 156 ASP A 160 -1 O GLU A 156 N SER A 153 SHEET 3 A 6 ILE A 26 ASP A 30 -1 N ALA A 27 O LEU A 159 SHEET 4 A 6 SER A 261 SER A 265 -1 O SER A 261 N ASP A 30 SHEET 5 A 6 GLN A 283 ILE A 285 1 N THR A 284 O CYS A 262 SHEET 6 A 6 ASP A 220 VAL A 221 1 O ASP A 220 N ILE A 285 SHEET 1 B 3 SER A 58 VAL A 62 0 SHEET 2 B 3 VAL A 51 GLN A 55 -1 O CYS A 53 N ILE A 60 SHEET 3 B 3 ILE A 88 HIS A 91 1 O ILE A 88 N VAL A 52 SHEET 1 C 3 TRP A 102 GLN A 103 0 SHEET 2 C 3 VAL A 94 LYS A 96 -1 N VAL A 94 O GLN A 103 SHEET 3 C 3 HIS A 124 VAL A 126 -1 O LYS A 125 N PHE A 95 SHEET 1 D 4 MET A 395 ASN A 400 0 SHEET 2 D 4 LYS A 498 ILE A 508 -1 O LEU A 499 N LYS A 399 SHEET 3 D 4 VAL A 438 LYS A 448 -1 O ILE A 439 N ASP A 507 SHEET 4 D 4 VAL A 454 PRO A 460 -1 N TYR A 455 O LEU A 447 SHEET 1 E 6 VAL B 149 SER B 153 0 SHEET 2 E 6 GLU B 156 ASP B 160 -1 O GLU B 156 N SER B 153 SHEET 3 E 6 ILE B 26 ASP B 30 -1 O ALA B 27 N LEU B 159 SHEET 4 E 6 SER B 261 SER B 265 -1 O SER B 261 N ASP B 30 SHEET 5 E 6 GLN B 283 ILE B 285 1 N THR B 284 O CYS B 262 SHEET 6 E 6 ASP B 220 VAL B 221 1 N ASP B 220 O GLN B 283 SHEET 1 F 3 SER B 58 VAL B 62 0 SHEET 2 F 3 VAL B 51 GLN B 55 -1 N CYS B 53 O ALA B 61 SHEET 3 F 3 ILE B 88 HIS B 91 1 O ILE B 88 N VAL B 52 SHEET 1 G 3 TRP B 102 GLN B 103 0 SHEET 2 G 3 ALA B 93 LYS B 96 -1 N VAL B 94 O GLN B 103 SHEET 3 G 3 HIS B 124 SER B 127 -1 O LYS B 125 N PHE B 95 SHEET 1 H 2 GLU B 176 THR B 178 0 SHEET 2 H 2 LEU B 181 LYS B 182 -1 O LEU B 181 N LEU B 177 SHEET 1 I 4 MET B 395 ASN B 400 0 SHEET 2 I 4 LYS B 498 ILE B 509 -1 O LEU B 499 N LYS B 399 SHEET 3 I 4 ILE B 437 LYS B 448 -1 O ILE B 437 N ILE B 509 SHEET 4 I 4 VAL B 454 PRO B 460 -1 N TYR B 455 O LEU B 447 CISPEP 1 TYR B 494 PRO B 495 0 -0.22 CRYST1 105.100 105.100 292.300 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009515 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009515 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003421 0.00000 MASTER 433 0 0 47 34 0 0 6 0 0 0 80 END