HEADER METAL TRANSPORT 29-JUN-01 1JI5 TITLE DLP-1 FROM BACILLUS ANTHRACIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DLP-1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 1392; SOURCE 4 GENE: DLP-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSM214G KEYWDS DODECAMER, FOUR-HELIX BUNDLE, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR E.PAPINUTTO,W.G.DUNDON,N.PITULIS,R.BATTISTUTTA,C.MONTECUCCO,G.ZANOTTI REVDAT 3 13-JUL-11 1JI5 1 VERSN REVDAT 2 24-FEB-09 1JI5 1 VERSN REVDAT 1 19-JUN-02 1JI5 0 JRNL AUTH E.PAPINUTTO,W.G.DUNDON,N.PITULIS,R.BATTISTUTTA,C.MONTECUCCO, JRNL AUTH 2 G.ZANOTTI JRNL TITL STRUCTURE OF TWO IRON-BINDING PROTEINS FROM BACILLUS JRNL TITL 2 ANTHRACIS. JRNL REF J.BIOL.CHEM. V. 277 15093 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11836250 JRNL DOI 10.1074/JBC.M112378200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.A.GRANT,D.J.FILMAN,S.E.FINKEL,R.KOLTER,J.M.HOGLE REMARK 1 TITL THE CRYSTAL STRUCTURE OF DPS, A FERRITIN HOMOLOG THAT BINDS REMARK 1 TITL 2 AND PROTECTS DNA REMARK 1 REF NAT.STRUCT.BIOL. V. 5 294 1998 REMARK 1 REFN ISSN 1072-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.ILARI,S.STEFANINI,E.CHIANCONE,D.TSERNOGLOU REMARK 1 TITL THE DODECAMERIC FERRITIN FROM LISTERIA INNOCUA CONTAINS A REMARK 1 TITL 2 NOVEL INTERSUBUNIT IRON-BINDING SITE REMARK 1 REF NAT.STRUCT.BIOL. V. 7 38 2000 REMARK 1 REFN ISSN 1072-8368 REMARK 1 DOI 10.1038/71236 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2598111.610 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 20676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1414 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3280 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 236 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4612 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.47000 REMARK 3 B22 (A**2) : 3.47000 REMARK 3 B33 (A**2) : -6.94000 REMARK 3 B12 (A**2) : 5.52000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.44 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.48 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.74 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.917 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.991 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.313 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.629 ; 4.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 65.39 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : 0.032 ; 300 REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; 10 REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : MPD.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NON-CRYSTALLOGRAPHIC SYMMETRRY WAS REMARK 3 IMPOSED TO THE FOUR SUBUNITS DURING THE REFINEMENT REMARK 4 REMARK 4 1JI5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-01. REMARK 100 THE RCSB ID CODE IS RCSB013799. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20677 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: HP-NAP MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM ACETATE, CITRATE BUFFER, MPD, REMARK 280 PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.61200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.75675 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.05500 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 44.61200 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 25.75675 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.05500 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 44.61200 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 25.75675 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.05500 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.51350 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 140.11000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 51.51350 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 140.11000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 51.51350 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 140.11000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DODECAMER GENERATED FROM THE REMARK 300 TETRAMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -Y, X-Y, Z AND - REMARK 300 X+Y, -X, Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 37190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -437.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 17 O HOH A 167 2.01 REMARK 500 OE1 GLU C 55 O HOH C 156 2.16 REMARK 500 OG1 THR B 21 O4 MPD B 2001 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA C 84 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 35 -71.30 -46.56 REMARK 500 ALA A 69 48.43 -144.35 REMARK 500 GLN A 81 -75.66 -51.42 REMARK 500 GLU A 82 -171.95 99.00 REMARK 500 ALA A 83 -130.85 41.12 REMARK 500 ALA A 84 81.26 67.14 REMARK 500 TYR A 85 -79.11 -67.94 REMARK 500 LEU A 144 -81.23 -82.41 REMARK 500 PHE B 35 -71.93 -45.96 REMARK 500 ALA B 69 49.18 -144.08 REMARK 500 GLU B 87 171.93 -54.85 REMARK 500 LEU B 144 -79.69 -82.62 REMARK 500 ALA C 69 49.57 -144.04 REMARK 500 GLU C 87 177.91 -57.43 REMARK 500 LEU C 144 -80.19 -82.60 REMARK 500 PHE D 35 -72.59 -45.39 REMARK 500 ALA D 69 49.68 -144.68 REMARK 500 TYR D 85 167.49 67.81 REMARK 500 LEU D 144 -81.13 -81.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 172 DISTANCE = 11.84 ANGSTROMS REMARK 525 HOH A 181 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A 188 DISTANCE = 11.45 ANGSTROMS REMARK 525 HOH A 189 DISTANCE = 7.86 ANGSTROMS REMARK 525 HOH A 190 DISTANCE = 5.40 ANGSTROMS REMARK 525 HOH A 192 DISTANCE = 9.55 ANGSTROMS REMARK 525 HOH A 193 DISTANCE = 17.71 ANGSTROMS REMARK 525 HOH A 196 DISTANCE = 5.32 ANGSTROMS REMARK 525 HOH B2005 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH B2014 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH B2018 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B2025 DISTANCE = 7.59 ANGSTROMS REMARK 525 HOH B2026 DISTANCE = 9.33 ANGSTROMS REMARK 525 HOH C 171 DISTANCE = 9.89 ANGSTROMS REMARK 525 HOH C 180 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH C 188 DISTANCE = 8.73 ANGSTROMS REMARK 525 HOH D 181 DISTANCE = 5.47 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 151 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 198 O REMARK 620 2 GLU B 58 OE2 115.0 REMARK 620 3 HIS A 27 NE2 92.7 91.0 REMARK 620 4 ASP B 54 OD1 148.0 96.4 92.8 REMARK 620 5 ASP B 54 OD2 103.5 117.1 135.8 53.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 152 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2028 O REMARK 620 2 ASP A 54 OD1 139.3 REMARK 620 3 ASP A 54 OD2 91.7 51.7 REMARK 620 4 HIS B 27 NE2 106.0 97.2 141.7 REMARK 620 5 GLU A 58 OE2 112.7 94.9 103.6 100.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE D 153 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 191 O REMARK 620 2 HIS C 27 NE2 96.4 REMARK 620 3 ASP D 54 OD2 111.3 142.5 REMARK 620 4 GLU D 58 OE2 96.0 89.5 111.1 REMARK 620 5 ASP D 54 OD1 166.6 93.9 55.7 92.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE C 154 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 192 O REMARK 620 2 ASP C 54 OD1 156.7 REMARK 620 3 ASP C 54 OD2 109.8 53.7 REMARK 620 4 HIS D 27 NE2 90.9 92.5 135.3 REMARK 620 5 GLU C 58 OE2 108.3 94.5 114.9 93.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE D 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE C 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JI4 RELATED DB: PDB REMARK 900 1JI4 IS HP-NAP (NEUTROPHIL ACTIVATING PROTEIN) REMARK 900 RELATED ID: 1QGH RELATED DB: PDB REMARK 900 1QGH IS MINI-FERRITIN FROM LISTERIA INNOCUA DBREF 1JI5 A 4 145 UNP Q8RPQ2 Q8RPQ2_BACAN 4 145 DBREF 1JI5 B 4 145 UNP Q8RPQ2 Q8RPQ2_BACAN 4 145 DBREF 1JI5 C 4 145 UNP Q8RPQ2 Q8RPQ2_BACAN 4 145 DBREF 1JI5 D 4 145 UNP Q8RPQ2 Q8RPQ2_BACAN 4 145 SEQRES 1 A 142 GLN VAL ILE GLU VAL LEU ASN LYS GLN VAL ALA ASP TRP SEQRES 2 A 142 SER VAL LEU PHE THR LYS LEU HIS ASN PHE HIS TRP TYR SEQRES 3 A 142 VAL LYS GLY PRO GLN PHE PHE THR LEU HIS GLU LYS PHE SEQRES 4 A 142 GLU GLU LEU TYR THR GLU SER ALA THR HIS ILE ASP GLU SEQRES 5 A 142 ILE ALA GLU ARG ILE LEU ALA ILE GLY GLY LYS PRO VAL SEQRES 6 A 142 ALA THR MET LYS GLU TYR LEU GLU ILE SER SER ILE GLN SEQRES 7 A 142 GLU ALA ALA TYR GLY GLU THR ALA GLU GLY MET VAL GLU SEQRES 8 A 142 ALA ILE MET LYS ASP TYR GLU MET MET LEU VAL GLU LEU SEQRES 9 A 142 LYS LYS GLY MET GLU ILE ALA GLN ASN SER ASP ASP GLU SEQRES 10 A 142 MET THR SER ASP LEU LEU LEU GLY ILE TYR THR GLU LEU SEQRES 11 A 142 GLU LYS HIS ALA TRP MET LEU ARG ALA PHE LEU ASN SEQRES 1 B 142 GLN VAL ILE GLU VAL LEU ASN LYS GLN VAL ALA ASP TRP SEQRES 2 B 142 SER VAL LEU PHE THR LYS LEU HIS ASN PHE HIS TRP TYR SEQRES 3 B 142 VAL LYS GLY PRO GLN PHE PHE THR LEU HIS GLU LYS PHE SEQRES 4 B 142 GLU GLU LEU TYR THR GLU SER ALA THR HIS ILE ASP GLU SEQRES 5 B 142 ILE ALA GLU ARG ILE LEU ALA ILE GLY GLY LYS PRO VAL SEQRES 6 B 142 ALA THR MET LYS GLU TYR LEU GLU ILE SER SER ILE GLN SEQRES 7 B 142 GLU ALA ALA TYR GLY GLU THR ALA GLU GLY MET VAL GLU SEQRES 8 B 142 ALA ILE MET LYS ASP TYR GLU MET MET LEU VAL GLU LEU SEQRES 9 B 142 LYS LYS GLY MET GLU ILE ALA GLN ASN SER ASP ASP GLU SEQRES 10 B 142 MET THR SER ASP LEU LEU LEU GLY ILE TYR THR GLU LEU SEQRES 11 B 142 GLU LYS HIS ALA TRP MET LEU ARG ALA PHE LEU ASN SEQRES 1 C 142 GLN VAL ILE GLU VAL LEU ASN LYS GLN VAL ALA ASP TRP SEQRES 2 C 142 SER VAL LEU PHE THR LYS LEU HIS ASN PHE HIS TRP TYR SEQRES 3 C 142 VAL LYS GLY PRO GLN PHE PHE THR LEU HIS GLU LYS PHE SEQRES 4 C 142 GLU GLU LEU TYR THR GLU SER ALA THR HIS ILE ASP GLU SEQRES 5 C 142 ILE ALA GLU ARG ILE LEU ALA ILE GLY GLY LYS PRO VAL SEQRES 6 C 142 ALA THR MET LYS GLU TYR LEU GLU ILE SER SER ILE GLN SEQRES 7 C 142 GLU ALA ALA TYR GLY GLU THR ALA GLU GLY MET VAL GLU SEQRES 8 C 142 ALA ILE MET LYS ASP TYR GLU MET MET LEU VAL GLU LEU SEQRES 9 C 142 LYS LYS GLY MET GLU ILE ALA GLN ASN SER ASP ASP GLU SEQRES 10 C 142 MET THR SER ASP LEU LEU LEU GLY ILE TYR THR GLU LEU SEQRES 11 C 142 GLU LYS HIS ALA TRP MET LEU ARG ALA PHE LEU ASN SEQRES 1 D 142 GLN VAL ILE GLU VAL LEU ASN LYS GLN VAL ALA ASP TRP SEQRES 2 D 142 SER VAL LEU PHE THR LYS LEU HIS ASN PHE HIS TRP TYR SEQRES 3 D 142 VAL LYS GLY PRO GLN PHE PHE THR LEU HIS GLU LYS PHE SEQRES 4 D 142 GLU GLU LEU TYR THR GLU SER ALA THR HIS ILE ASP GLU SEQRES 5 D 142 ILE ALA GLU ARG ILE LEU ALA ILE GLY GLY LYS PRO VAL SEQRES 6 D 142 ALA THR MET LYS GLU TYR LEU GLU ILE SER SER ILE GLN SEQRES 7 D 142 GLU ALA ALA TYR GLY GLU THR ALA GLU GLY MET VAL GLU SEQRES 8 D 142 ALA ILE MET LYS ASP TYR GLU MET MET LEU VAL GLU LEU SEQRES 9 D 142 LYS LYS GLY MET GLU ILE ALA GLN ASN SER ASP ASP GLU SEQRES 10 D 142 MET THR SER ASP LEU LEU LEU GLY ILE TYR THR GLU LEU SEQRES 11 D 142 GLU LYS HIS ALA TRP MET LEU ARG ALA PHE LEU ASN HET FE B 151 1 HET FE A 152 1 HET FE D 153 1 HET FE C 154 1 HET MPD B2001 8 HETNAM FE FE (III) ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 5 FE 4(FE 3+) FORMUL 9 MPD C6 H14 O2 FORMUL 10 HOH *149(H2 O) HELIX 1 1 GLN A 4 VAL A 30 1 27 HELIX 2 2 GLN A 34 ILE A 63 1 30 HELIX 3 3 THR A 70 SER A 78 1 9 HELIX 4 4 THR A 88 SER A 117 1 30 HELIX 5 5 ASP A 119 ASN A 145 1 27 HELIX 6 6 GLN B 4 VAL B 30 1 27 HELIX 7 7 GLN B 34 ILE B 63 1 30 HELIX 8 8 THR B 70 SER B 78 1 9 HELIX 9 9 THR B 88 SER B 117 1 30 HELIX 10 10 ASP B 119 ASN B 145 1 27 HELIX 11 11 GLN C 4 VAL C 30 1 27 HELIX 12 12 GLN C 34 ILE C 63 1 30 HELIX 13 13 THR C 70 SER C 78 1 9 HELIX 14 14 THR C 88 SER C 117 1 30 HELIX 15 15 ASP C 119 ASN C 145 1 27 HELIX 16 16 GLN D 4 VAL D 30 1 27 HELIX 17 17 GLN D 34 ILE D 63 1 30 HELIX 18 18 THR D 70 SER D 78 1 9 HELIX 19 19 THR D 88 SER D 117 1 30 HELIX 20 20 ASP D 119 ASN D 145 1 27 LINK FE FE B 151 O HOH A 198 1555 1555 2.05 LINK FE FE A 152 O HOH B2028 1555 1555 2.19 LINK FE FE D 153 O HOH C 191 1555 1555 1.71 LINK FE FE C 154 O HOH D 192 1555 1555 1.84 LINK FE FE A 152 OD1 ASP A 54 1555 1555 2.73 LINK FE FE A 152 OD2 ASP A 54 1555 1555 2.14 LINK FE FE A 152 NE2 HIS B 27 1555 1555 1.88 LINK FE FE A 152 OE2 GLU A 58 1555 1555 2.45 LINK FE FE B 151 OE2 GLU B 58 1555 1555 2.42 LINK FE FE B 151 NE2 HIS A 27 1555 1555 2.05 LINK FE FE B 151 OD1 ASP B 54 1555 1555 2.72 LINK FE FE B 151 OD2 ASP B 54 1555 1555 1.99 LINK FE FE C 154 OD1 ASP C 54 1555 1555 2.69 LINK FE FE C 154 OD2 ASP C 54 1555 1555 1.95 LINK FE FE C 154 NE2 HIS D 27 1555 1555 2.05 LINK FE FE C 154 OE2 GLU C 58 1555 1555 2.39 LINK FE FE D 153 NE2 HIS C 27 1555 1555 2.05 LINK FE FE D 153 OD2 ASP D 54 1555 1555 1.88 LINK FE FE D 153 OE2 GLU D 58 1555 1555 2.51 LINK FE FE D 153 OD1 ASP D 54 1555 1555 2.59 SITE 1 AC1 4 HIS A 27 HOH A 198 ASP B 54 GLU B 58 SITE 1 AC2 4 ASP A 54 GLU A 58 HIS B 27 HOH B2028 SITE 1 AC3 4 HIS C 27 HOH C 191 ASP D 54 GLU D 58 SITE 1 AC4 4 ASP C 54 GLU C 58 HIS D 27 HOH D 192 SITE 1 AC5 11 SER A 17 PHE A 20 THR A 21 ILE A 53 SITE 2 AC5 11 MET A 71 HOH A 157 HOH A 167 SER B 17 SITE 3 AC5 11 PHE B 20 THR B 21 MET B 71 CRYST1 89.224 89.224 210.165 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011208 0.006471 0.000000 0.00000 SCALE2 0.000000 0.012942 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004758 0.00000 MASTER 432 0 5 20 0 0 7 6 0 0 0 44 END