HEADER PHOTOSYNTHESIS 02-MAY-02 1JBO TITLE THE 1.45A THREE-DIMENSIONAL STRUCTURE OF C-PHYCOCYANIN FROM THE TITLE 2 THERMOPHYLIC CYANOBACTERIUM SYNECHOCOCCUS ELONGATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-PHYCOCYANIN ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: C-PHYCOCYANIN BETA CHAIN; COMPND 6 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 32046; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS; SOURCE 6 ORGANISM_TAXID: 32046 KEYWDS PHOTOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR J.NIELD,P.J.RIZKALLAH,J.BARBER,N.E.CHAYEN REVDAT 3 13-JUL-11 1JBO 1 VERSN REVDAT 2 24-FEB-09 1JBO 1 VERSN REVDAT 1 18-MAR-03 1JBO 0 JRNL AUTH J.NIELD,P.J.RIZKALLAH,J.BARBER,N.E.CHAYEN JRNL TITL THE 1.45A THREE-DIMENSIONAL STRUCTURE OF C-PHYCOCYANIN FROM JRNL TITL 2 THE THERMOPHILIC CYANOBACTERIUM SYNECHOCOCCUS ELONGATUS JRNL REF J.STRUCT.BIOL. V. 141 149 2003 JRNL REFN ISSN 1047-8477 JRNL PMID 12615541 JRNL DOI 10.1016/S1047-8477(02)00609-3 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 67533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3617 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2498 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 474 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.31000 REMARK 3 B22 (A**2) : -0.66000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : -1.31000 REMARK 3 B13 (A**2) : 1.97000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.039 ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WEIGHTED DIAGONAL MATRIX REMARK 4 REMARK 4 1JBO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-02. REMARK 100 THE RCSB ID CODE IS RCSB016093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.244 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED GE(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71757 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 56.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.26100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1CPC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, MES, PH 6.1, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 93.99750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.26948 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 20.18067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 93.99750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 54.26948 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 20.18067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 93.99750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 54.26948 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 20.18067 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 93.99750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 54.26948 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 20.18067 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 93.99750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 54.26948 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 20.18067 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 93.99750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 54.26948 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 20.18067 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 108.53896 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 40.36133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 108.53896 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 40.36133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 108.53896 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 40.36133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 108.53896 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 40.36133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 108.53896 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 40.36133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 108.53896 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 40.36133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE REMARK 300 CONTENTS OF THE ASYMMETRIC UNIT BY APPLYING THE OPERATIONS: -Y,X-Y+ REMARK 300 1,Z ; -X+Y-1,-X,Z ; Y-1,X+1,-Z ; X-Y,-Y+1,-Z ; -X-1,-X+Y,-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 60270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 69500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -507.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 60.54200 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 60.54200 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 60.54200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 504 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 734 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 20 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 110 O HOH B 630 1.35 REMARK 500 CZ ARG B 110 O HOH B 630 1.60 REMARK 500 O HOH A 551 O HOH A 627 1.66 REMARK 500 O HOH A 645 O HOH A 738 1.84 REMARK 500 NH2 ARG A 42 O HOH A 757 1.91 REMARK 500 O HOH B 626 O HOH B 633 1.98 REMARK 500 O HOH A 648 O HOH A 750 2.01 REMARK 500 NH2 ARG B 110 O HOH B 715 2.02 REMARK 500 O HOH A 605 O HOH A 746 2.04 REMARK 500 O HOH A 624 O HOH A 706 2.05 REMARK 500 OG SER A 125 O HOH A 595 2.06 REMARK 500 O HOH B 664 O HOH B 686 2.07 REMARK 500 O HOH B 664 O HOH B 718 2.10 REMARK 500 O HOH B 601 O HOH B 702 2.10 REMARK 500 SG CYS B 155 CAC CYC B 503 2.15 REMARK 500 OE1 GLU B 117 O HOH B 671 2.17 REMARK 500 OE2 GLU B 117 O HOH B 696 2.17 REMARK 500 SG CYS B 84 CAC CYC B 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 735 O HOH A 735 6556 1.59 REMARK 500 O HOH A 561 O HOH B 607 3555 1.85 REMARK 500 O HOH A 661 O HOH B 617 5556 1.92 REMARK 500 O HOH A 628 O HOH B 692 5556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 11 CA ALA A 11 CB -0.137 REMARK 500 GLN A 15 CB GLN A 15 CG -0.179 REMARK 500 ASN A 21 N ASN A 21 CA -0.124 REMARK 500 ASN A 47 CG ASN A 47 OD1 -0.160 REMARK 500 LYS A 62 CB LYS A 62 CG -0.525 REMARK 500 LYS A 62 CG LYS A 62 CD -0.263 REMARK 500 GLN A 70 CG GLN A 70 CD 0.229 REMARK 500 SER A 125 CB SER A 125 OG 0.094 REMARK 500 GLU A 161 CD GLU A 161 OE1 0.077 REMARK 500 TYR A 168 CE2 TYR A 168 CD2 -0.102 REMARK 500 GLU B 89 CD GLU B 89 OE2 0.085 REMARK 500 ALA B 172 CA ALA B 172 CB 0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CG - SD - CE ANGL. DEV. = 11.5 DEGREES REMARK 500 ASP A 13 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 42 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 53 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TYR A 60 CB - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 37 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP B 39 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 57 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 108 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 116 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 116 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP B 138 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 154 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP B 167 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 75 43.11 -101.38 REMARK 500 LEU A 111 -47.19 -133.42 REMARK 500 THR B 77 143.71 82.56 REMARK 500 CYS B 111 -59.76 -122.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 675 DISTANCE = 5.76 ANGSTROMS REMARK 525 HOH A 697 DISTANCE = 5.71 ANGSTROMS REMARK 525 HOH A 712 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 713 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH A 714 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A 730 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH A 736 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 737 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 740 DISTANCE = 5.13 ANGSTROMS REMARK 525 HOH A 742 DISTANCE = 5.58 ANGSTROMS REMARK 525 HOH A 743 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 681 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B 704 DISTANCE = 6.91 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYC A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYC B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYC B 503 DBREF 1JBO A 1 174 UNP P50032 PHCA_SYNEL 1 162 DBREF 1JBO B 1 174 UNP P50033 PHCB_SYNEL 1 172 SEQADV 1JBO MEN B 72 UNP P50033 ASN 72 MODIFIED RESIDUE SEQRES 1 A 162 MET LYS THR PRO ILE THR GLU ALA ILE ALA ALA ALA ASP SEQRES 2 A 162 THR GLN GLY ARG PHE LEU SER ASN THR GLU LEU GLN ALA SEQRES 3 A 162 VAL ASP GLY ARG PHE LYS ARG ALA VAL ALA SER MET GLU SEQRES 4 A 162 ALA ALA ARG ALA LEU THR ASN ASN ALA GLN SER LEU ILE SEQRES 5 A 162 ASP GLY ALA ALA GLN ALA VAL TYR GLN LYS PHE PRO TYR SEQRES 6 A 162 THR THR THR MET GLN GLY SER GLN TYR ALA SER THR PRO SEQRES 7 A 162 GLU GLY LYS ALA LYS CYS ALA ARG ASP ILE GLY TYR TYR SEQRES 8 A 162 LEU ARG MET VAL THR TYR CYS LEU VAL ALA GLY GLY THR SEQRES 9 A 162 GLY PRO MET ASP GLU TYR LEU ILE ALA GLY LEU SER GLU SEQRES 10 A 162 ILE ASN SER THR PHE ASP LEU SER PRO SER TRP TYR ILE SEQRES 11 A 162 GLU ALA LEU LYS TYR ILE LYS ALA ASN HIS GLY LEU THR SEQRES 12 A 162 GLY GLN ALA ALA VAL GLU ALA ASN ALA TYR ILE ASP TYR SEQRES 13 A 162 ALA ILE ASN ALA LEU SER SEQRES 1 B 172 MET LEU ASP ALA PHE ALA LYS VAL VAL ALA GLN ALA ASP SEQRES 2 B 172 ALA ARG GLY GLU PHE LEU THR ASN ALA GLN PHE ASP ALA SEQRES 3 B 172 LEU SER ASN LEU VAL LYS GLU GLY ASN LYS ARG LEU ASP SEQRES 4 B 172 ALA VAL ASN ARG ILE THR SER ASN ALA SER THR ILE VAL SEQRES 5 B 172 ALA ASN ALA ALA ARG ALA LEU PHE ALA GLU GLN PRO GLN SEQRES 6 B 172 LEU ILE GLN PRO GLY GLY MEN ALA TYR THR ASN ARG ARG SEQRES 7 B 172 MET ALA ALA CYS LEU ARG ASP MET GLU ILE ILE LEU ARG SEQRES 8 B 172 TYR VAL THR TYR ALA ILE LEU ALA GLY ASP SER SER VAL SEQRES 9 B 172 LEU ASP ASP ARG CYS LEU ASN GLY LEU ARG GLU THR TYR SEQRES 10 B 172 GLN ALA LEU GLY THR PRO GLY SER SER VAL ALA VAL ALA SEQRES 11 B 172 ILE GLN LYS MET LYS ASP ALA ALA ILE ALA ILE ALA ASN SEQRES 12 B 172 ASP PRO ASN GLY ILE THR PRO GLY ASP CYS SER ALA LEU SEQRES 13 B 172 MET SER GLU ILE ALA GLY TYR PHE ASP ARG ALA ALA ALA SEQRES 14 B 172 ALA VAL ALA MODRES 1JBO MEN B 72 ASN N-METHYL ASPARAGINE HET MEN B 72 9 HET CYC A 501 43 HET CYC B 502 43 HET CYC B 503 43 HETNAM MEN N-METHYL ASPARAGINE HETNAM CYC PHYCOCYANOBILIN FORMUL 2 MEN C5 H10 N2 O3 FORMUL 3 CYC 3(C33 H40 N4 O6) FORMUL 6 HOH *474(H2 O) HELIX 1 1 THR A 3 GLN A 15 1 13 HELIX 2 2 SER A 20 ASN A 47 1 28 HELIX 3 3 ASN A 47 PHE A 63 1 17 HELIX 4 4 PRO A 64 THR A 68 5 5 HELIX 5 5 THR A 77 GLY A 102 1 26 HELIX 6 6 THR A 104 LEU A 111 1 8 HELIX 7 7 GLY A 114 ASP A 123 1 10 HELIX 8 8 SER A 125 HIS A 140 1 16 HELIX 9 9 THR A 145 LEU A 173 1 19 HELIX 10 10 ASP B 3 ARG B 15 1 13 HELIX 11 12 GLU B 33 ASN B 47 1 15 HELIX 12 13 ASN B 47 GLN B 63 1 17 HELIX 13 14 PRO B 64 ILE B 67 5 4 HELIX 14 15 THR B 77 GLY B 102 1 26 HELIX 15 16 SER B 104 CYS B 111 1 8 HELIX 16 17 GLY B 114 GLY B 123 1 10 HELIX 17 18 PRO B 125 ASN B 145 1 21 HELIX 18 19 CYS B 155 ALA B 174 1 20 LINK SG CYS A 84 CAC CYC A 501 1555 1555 1.96 LINK C GLY B 71 N MEN B 72 1555 1555 1.34 LINK C MEN B 72 N ALA B 75 1555 1555 1.37 SITE 1 AC1 23 THR A 66 SER A 72 GLN A 73 TYR A 74 SITE 2 AC1 23 ALA A 75 LYS A 83 CYS A 84 ARG A 86 SITE 3 AC1 23 ASP A 87 TYR A 110 LEU A 124 TRP A 128 SITE 4 AC1 23 TYR A 129 HOH A 510 HOH A 513 HOH A 520 SITE 5 AC1 23 HOH A 530 HOH A 561 ARG B 57 ILE B 67 SITE 6 AC1 23 THR B 77 ASN B 78 HOH B 508 SITE 1 AC2 11 MEN B 72 ARG B 80 CYS B 84 ARG B 86 SITE 2 AC2 11 ASP B 87 ILE B 90 ARG B 110 LEU B 122 SITE 3 AC2 11 HOH B 613 HOH B 649 HOH B 663 SITE 1 AC3 23 LEU A 24 ASP A 28 ARG A 33 GLN A 147 SITE 2 AC3 23 HOH A 616 ASN B 35 LYS B 36 LEU B 38 SITE 3 AC3 23 ASP B 39 ASN B 145 ILE B 150 THR B 151 SITE 4 AC3 23 PRO B 152 GLY B 153 CYS B 155 HOH B 537 SITE 5 AC3 23 HOH B 578 HOH B 600 HOH B 615 HOH B 634 SITE 6 AC3 23 HOH B 651 HOH B 692 HOH B 711 CRYST1 187.995 187.995 60.542 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005319 0.003071 0.000000 0.00000 SCALE2 0.000000 0.006142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016517 0.00000 MASTER 452 0 4 18 0 0 15 6 0 0 0 27 END