HEADER RNA 21-MAY-01 1J8G TITLE X-RAY ANALYSIS OF A RNA TETRAPLEX R(UGGGGU)4 AT ULTRA-HIGH RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*UP*GP*GP*GP*GP*U)-3'; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS RNA TETRAPLEX, SR IONS, U TETRAD, OCTAPLEX, RNA EXPDTA X-RAY DIFFRACTION AUTHOR J.DENG,Y.XIONG,M.SUNDARALINGAM REVDAT 5 16-NOV-11 1J8G 1 VERSN HETATM REVDAT 4 24-FEB-09 1J8G 1 VERSN REVDAT 3 01-AUG-06 1J8G 1 REMARK REVDAT 2 01-APR-03 1J8G 1 JRNL REVDAT 1 23-NOV-01 1J8G 0 JRNL AUTH J.DENG,Y.XIONG,M.SUNDARALINGAM JRNL TITL X-RAY ANALYSIS OF AN RNA TETRAPLEX (UGGGGU)(4) WITH DIVALENT JRNL TITL 2 SR(2+) IONS AT SUBATOMIC RESOLUTION (0.61 A). JRNL REF PROC.NATL.ACAD.SCI.USA V. 98 13665 2001 JRNL REFN ISSN 0027-8424 JRNL PMID 11707581 JRNL DOI 10.1073/PNAS.241374798 REMARK 2 REMARK 2 RESOLUTION. 0.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : THIN CELL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : 0.112 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 10452 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 516 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : NULL REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1J8G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-01. REMARK 100 THE RCSB ID CODE IS RCSB013490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 207845 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.610 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM SODIUM CACODYLATE (PH 7.0), 12MM REMARK 280 SPERMINE TETRACHLORIDE, 20MM MGCL2, 80MM SRCL2, 40MM CACL2, 35% REMARK 280 MPD, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 18.07700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 18.07700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 18.07700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 18.07700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 18.07700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 18.07700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 18.07700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 18.07700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 36.15400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 18.07700 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 18.07700 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -18.07700 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 18.07700 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 36.15400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 72.30800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 54.23100 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 18.07700 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -18.07700 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 54.23100 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 36.15400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 18.07700 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 18.07700 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -18.07700 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 18.07700 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 36.15400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 72.30800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 54.23100 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 18.07700 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -18.07700 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 54.23100 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 SR SR C 503 LIES ON A SPECIAL POSITION. REMARK 375 SR SR C 504 LIES ON A SPECIAL POSITION. REMARK 375 SR SR A 505 LIES ON A SPECIAL POSITION. REMARK 375 SR SR A 506 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 512 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 102 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 131 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 178 LIES ON A SPECIAL POSITION. REMARK 375 SR SR D 501 LIES ON A SPECIAL POSITION. REMARK 375 SR SR B 502 LIES ON A SPECIAL POSITION. REMARK 375 SR SR B 507 LIES ON A SPECIAL POSITION. REMARK 375 SR SR D 508 LIES ON A SPECIAL POSITION. REMARK 375 NA NA B 513 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 101 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 125 O HOH C 127 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 130 O HOH D 183 3655 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U B 11 C4 U B 11 O4 0.059 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U B 11 C2 - N3 - C4 ANGL. DEV. = -3.8 DEGREES REMARK 500 U D 36 O5' - P - OP2 ANGL. DEV. = 8.2 DEGREES REMARK 500 U D 36 C5' - C4' - O4' ANGL. DEV. = 36.9 DEGREES REMARK 500 U D 36 C1' - O4' - C4' ANGL. DEV. = -25.5 DEGREES REMARK 500 U D 36 C2' - C3' - O3' ANGL. DEV. = 24.9 DEGREES REMARK 500 U D 36 C3' - C2' - C1' ANGL. DEV. = -20.5 DEGREES REMARK 500 U D 36 O4' - C1' - C2' ANGL. DEV. = 23.8 DEGREES REMARK 500 U D 36 C3' - C2' - O2' ANGL. DEV. = -20.9 DEGREES REMARK 500 U D 36 N3 - C4 - O4 ANGL. DEV. = -8.6 DEGREES REMARK 500 U D 36 C5 - C4 - O4 ANGL. DEV. = 10.0 DEGREES REMARK 500 U D 36 O3' - P - O5' ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G A 2 0.08 SIDE_CHAIN REMARK 500 G A 3 0.06 SIDE_CHAIN REMARK 500 G A 4 0.07 SIDE_CHAIN REMARK 500 G B 12 0.08 SIDE_CHAIN REMARK 500 G B 13 0.07 SIDE_CHAIN REMARK 500 G B 15 0.07 SIDE_CHAIN REMARK 500 U B 16 0.09 SIDE_CHAIN REMARK 500 G C 22 0.08 SIDE_CHAIN REMARK 500 G C 23 0.05 SIDE_CHAIN REMARK 500 G C 24 0.06 SIDE_CHAIN REMARK 500 G D 32 0.07 SIDE_CHAIN REMARK 500 G D 33 0.06 SIDE_CHAIN REMARK 500 G D 34 0.06 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 505 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 4 O6 REMARK 620 2 G A 5 O6 68.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 506 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 2 O6 REMARK 620 2 G A 3 O6 68.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 511 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 6 O2' REMARK 620 2 U A 6 O3' 56.9 REMARK 620 3 HOH A 201 O 74.0 130.5 REMARK 620 4 HOH A 157 O 82.5 89.3 77.8 REMARK 620 5 HOH A 185 O 115.7 80.4 131.5 147.5 REMARK 620 6 HOH A 191 O 151.4 150.9 77.4 89.7 85.0 REMARK 620 7 HOH A 206 O 77.7 102.5 70.2 145.9 66.6 94.5 REMARK 620 8 HOH A 187 O 137.4 88.4 130.2 72.3 76.7 63.7 139.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 512 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 6 O4 REMARK 620 2 G A 5 O6 47.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR B 502 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 12 O6 REMARK 620 2 G B 13 O6 68.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR B 507 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 14 O6 REMARK 620 2 G B 15 O6 69.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 510 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 13 OP1 REMARK 620 2 U A 1 O4 97.6 REMARK 620 3 HOH A 156 O 143.1 106.4 REMARK 620 4 HOH C 205 O 120.0 140.7 49.5 REMARK 620 5 HOH A 118 O 75.1 65.2 140.5 111.2 REMARK 620 6 HOH C 122 O 150.1 74.5 65.3 67.2 75.4 REMARK 620 7 HOH A 149 O 77.5 72.9 83.3 123.5 125.4 125.0 REMARK 620 8 HOH A 146 O 77.0 148.2 67.8 60.4 139.4 124.5 75.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 513 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 101 O REMARK 620 2 U B 16 O4 85.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR C 503 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 22 O6 REMARK 620 2 G C 23 O6 68.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR C 504 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 24 O6 REMARK 620 2 HOH C 102 O 124.1 REMARK 620 3 G C 25 O6 66.4 62.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 509 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 199 O REMARK 620 2 U C 26 O3' 170.6 REMARK 620 3 HOH C 200 O 70.6 101.6 REMARK 620 4 U C 26 O2' 118.0 60.3 118.8 REMARK 620 5 HOH C 198 O 69.7 113.6 129.2 58.7 REMARK 620 6 HOH C 125 O 102.3 83.5 95.7 133.0 122.8 REMARK 620 7 HOH C 127 O 102.0 86.9 162.5 78.7 57.9 69.9 REMARK 620 8 HOH C 121 O 65.5 105.6 50.8 76.8 84.1 146.2 141.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR D 501 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G D 34 O6 REMARK 620 2 G D 35 O6 69.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR D 508 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G D 32 O6 REMARK 620 2 G D 33 O6 68.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPM A 62 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR D 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 513 DBREF 1J8G A 1 6 PDB 1J8G 1J8G 1 6 DBREF 1J8G B 11 16 PDB 1J8G 1J8G 11 16 DBREF 1J8G C 21 26 PDB 1J8G 1J8G 21 26 DBREF 1J8G D 31 36 PDB 1J8G 1J8G 31 36 SEQRES 1 A 6 U G G G G U SEQRES 1 B 6 U G G G G U SEQRES 1 C 6 U G G G G U SEQRES 1 D 6 U G G G G U HET SPM A 62 17 HET SR D 501 1 HET SR B 502 1 HET SR C 503 1 HET SR C 504 1 HET SR A 505 1 HET SR A 506 1 HET SR B 507 1 HET SR D 508 1 HET CA C 509 1 HET CA B 510 1 HET CA A 511 1 HET NA A 512 2 HET NA B 513 1 HETNAM SPM SPERMINE HETNAM SR STRONTIUM ION HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 5 SPM C10 H26 N4 FORMUL 6 SR 8(SR 2+) FORMUL 14 CA 3(CA 2+) FORMUL 17 NA 2(NA 1+) FORMUL 19 HOH *106(H2 O) LINK SR SR A 505 O6 G A 4 1555 1555 2.61 LINK SR SR A 505 O6 G A 5 1555 1555 2.61 LINK SR SR A 506 O6 G A 2 1555 1555 2.60 LINK SR SR A 506 O6 G A 3 1555 1555 2.61 LINK CA CA A 511 O2' U A 6 1555 1555 2.76 LINK CA CA A 511 O3' U A 6 1555 1555 2.76 LINK CA CA A 511 O AHOH A 201 1555 1555 2.69 LINK CA CA A 511 O HOH A 157 1555 1555 2.80 LINK CA CA A 511 O AHOH A 185 1555 1555 2.18 LINK CA CA A 511 O BHOH A 191 1555 1555 2.57 LINK CA CA A 511 O BHOH A 201 1555 1555 3.15 LINK CA CA A 511 O BHOH A 206 1555 1555 2.59 LINK NA A NA A 512 O4 U A 6 1555 1555 2.35 LINK SR SR B 502 O6 G B 12 1555 1555 2.59 LINK SR SR B 502 O6 G B 13 1555 1555 2.61 LINK SR SR B 507 O6 G B 14 1555 1555 2.61 LINK SR SR B 507 O6 G B 15 1555 1555 2.60 LINK CA CA B 510 OP1 G B 13 1555 1555 2.53 LINK NA NA B 513 O HOH B 101 1555 1555 2.40 LINK NA NA B 513 O4 U B 16 1555 1555 2.37 LINK SR SR C 503 O6 G C 22 1555 1555 2.61 LINK SR SR C 503 O6 G C 23 1555 1555 2.61 LINK SR SR C 504 O6 G C 24 1555 1555 2.66 LINK SR SR C 504 O HOH C 102 1555 1555 2.81 LINK SR SR C 504 O6 G C 25 1555 1555 2.60 LINK CA CA C 509 O BHOH C 199 1555 1555 2.65 LINK CA CA C 509 O3' U C 26 1555 1555 2.57 LINK CA CA C 509 O BHOH C 200 1555 1555 2.48 LINK CA CA C 509 O2' U C 26 1555 1555 2.71 LINK CA CA C 509 O BHOH C 198 1555 1555 2.86 LINK SR SR D 501 O6 G D 34 1555 1555 2.61 LINK SR SR D 501 O6 G D 35 1555 1555 2.60 LINK SR SR D 508 O6 G D 32 1555 1555 2.60 LINK SR SR D 508 O6 G D 33 1555 1555 2.61 LINK SR SR A 505 O6 G A 4 1555 2565 2.61 LINK SR SR A 505 O6 G A 4 1555 3555 2.61 LINK SR SR A 505 O6 G A 4 1555 4455 2.61 LINK SR SR A 505 O6 G A 5 1555 2565 2.61 LINK SR SR A 505 O6 G A 5 1555 3555 2.61 LINK SR SR A 505 O6 G A 5 1555 4455 2.61 LINK SR SR A 506 O6 G A 2 1555 2565 2.60 LINK SR SR A 506 O6 G A 2 1555 4455 2.60 LINK SR SR A 506 O6 G A 3 1555 2565 2.61 LINK SR SR A 506 O6 G A 3 1555 4455 2.61 LINK SR SR A 506 O6 G A 2 1555 3555 2.60 LINK SR SR A 506 O6 G A 3 1555 3555 2.61 LINK CA CA A 511 O HOH A 187 1555 8666 2.60 LINK NA A NA A 512 O4 U A 6 1555 4455 2.35 LINK NA A NA A 512 O4 U A 6 1555 3555 2.35 LINK NA A NA A 512 O4 U A 6 1555 2565 2.35 LINK SR SR B 502 O6 G B 12 1555 2675 2.59 LINK SR SR B 502 O6 G B 12 1555 3655 2.59 LINK SR SR B 502 O6 G B 13 1555 3655 2.61 LINK SR SR B 502 O6 G B 12 1555 4465 2.59 LINK SR SR B 502 O6 G B 13 1555 2675 2.61 LINK SR SR B 502 O6 G B 13 1555 4465 2.61 LINK SR SR B 507 O6 G B 14 1555 3655 2.61 LINK SR SR B 507 O6 G B 14 1555 4465 2.61 LINK SR SR B 507 O6 G B 15 1555 2675 2.60 LINK SR SR B 507 O6 G B 14 1555 2675 2.61 LINK SR SR B 507 O6 G B 15 1555 4465 2.60 LINK SR SR B 507 O6 G B 15 1555 3655 2.60 LINK CA CA B 510 O4 U A 1 1555 3555 2.55 LINK CA CA B 510 O BHOH A 156 1555 3555 2.65 LINK CA CA B 510 O AHOH A 156 1555 3555 2.60 LINK CA CA B 510 O AHOH C 205 1555 3555 2.71 LINK CA CA B 510 O HOH A 118 1555 3555 2.68 LINK CA CA B 510 O HOH C 122 1555 3555 2.56 LINK CA CA B 510 O HOH A 149 1555 3555 2.53 LINK CA CA B 510 O BHOH C 205 1555 3555 2.56 LINK CA CA B 510 O HOH A 146 1555 3555 2.58 LINK NA NA B 513 O4 U B 16 1555 2675 2.37 LINK NA NA B 513 O HOH B 101 1555 4465 2.40 LINK NA NA B 513 O HOH B 101 1555 2675 2.40 LINK NA NA B 513 O4 U B 16 1555 3655 2.37 LINK NA NA B 513 O HOH B 101 1555 3655 2.40 LINK NA NA B 513 O4 U B 16 1555 4465 2.37 LINK SR SR C 503 O6 G C 23 1555 3555 2.61 LINK SR SR C 503 O6 G C 23 1555 2565 2.61 LINK SR SR C 503 O6 G C 23 1555 4455 2.61 LINK SR SR C 503 O6 G C 22 1555 2565 2.61 LINK SR SR C 503 O6 G C 22 1555 3555 2.61 LINK SR SR C 503 O6 G C 22 1555 4455 2.61 LINK SR SR C 504 O6 G C 24 1555 3555 2.66 LINK SR SR C 504 O6 G C 25 1555 3555 2.60 LINK SR SR C 504 O6 G C 24 1555 4455 2.66 LINK SR SR C 504 O6 G C 24 1555 2565 2.66 LINK SR SR C 504 O HOH C 102 1555 4455 2.81 LINK SR SR C 504 O HOH C 102 1555 3555 2.81 LINK SR SR C 504 O HOH C 102 1555 2565 2.81 LINK SR SR C 504 O6 G C 25 1555 4455 2.60 LINK SR SR C 504 O6 G C 25 1555 2565 2.60 LINK CA CA C 509 O HOH C 125 1555 3555 2.45 LINK CA CA C 509 O AHOH C 127 1555 3555 2.55 LINK CA CA C 509 O AHOH C 200 1555 3555 2.55 LINK CA CA C 509 O HOH C 121 1555 3555 2.57 LINK CA CA C 509 O AHOH C 198 1555 3555 2.61 LINK CA CA C 509 O AHOH C 199 1555 3555 2.52 LINK CA CA C 509 O BHOH C 127 1555 3555 1.94 LINK SR SR D 501 O6 G D 34 1555 4465 2.61 LINK SR SR D 501 O6 G D 35 1555 4465 2.60 LINK SR SR D 501 O6 G D 34 1555 3655 2.61 LINK SR SR D 501 O6 G D 34 1555 2675 2.61 LINK SR SR D 501 O6 G D 35 1555 3655 2.60 LINK SR SR D 501 O6 G D 35 1555 2675 2.60 LINK SR SR D 508 O6 G D 32 1555 2675 2.60 LINK SR SR D 508 O6 G D 33 1555 4465 2.61 LINK SR SR D 508 O6 G D 33 1555 2675 2.61 LINK SR SR D 508 O6 G D 32 1555 4465 2.60 LINK SR SR D 508 O6 G D 32 1555 3655 2.60 LINK SR SR D 508 O6 G D 33 1555 3655 2.61 LINK O6 G A 5 NA B NA A 512 1555 1555 2.89 LINK O4 U A 6 NA B NA A 512 1555 1555 2.61 SITE 1 AC1 13 G A 2 G A 3 HOH A 67 HOH A 137 SITE 2 AC1 13 HOH A 151 HOH A 164 G B 14 G B 15 SITE 3 AC1 13 HOH B 109 HOH B 177 U C 21 G C 22 SITE 4 AC1 13 HOH C 184 SITE 1 AC2 2 G D 34 G D 35 SITE 1 AC3 2 G B 12 G B 13 SITE 1 AC4 2 G C 22 G C 23 SITE 1 AC5 3 G C 24 G C 25 HOH C 102 SITE 1 AC6 3 G A 4 G A 5 NA A 512 SITE 1 AC7 2 G A 2 G A 3 SITE 1 AC8 2 G B 14 G B 15 SITE 1 AC9 2 G D 32 G D 33 SITE 1 BC1 7 U C 26 HOH C 121 HOH C 125 HOH C 127 SITE 2 BC1 7 HOH C 198 HOH C 199 HOH C 200 SITE 1 BC2 8 U A 1 HOH A 118 HOH A 146 HOH A 149 SITE 2 BC2 8 HOH A 156 G B 13 HOH C 122 HOH C 205 SITE 1 BC3 7 U A 6 HOH A 157 HOH A 185 HOH A 187 SITE 2 BC3 7 HOH A 191 HOH A 201 HOH A 206 SITE 1 BC4 3 G A 5 U A 6 SR A 505 SITE 1 BC5 3 G B 15 U B 16 HOH B 101 CRYST1 36.154 36.154 74.134 90.00 90.00 90.00 P 4 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027659 0.000000 0.000000 0.00000 SCALE2 0.000000 0.027659 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013489 0.00000 MASTER 546 0 14 0 0 0 20 6 0 0 0 4 END