HEADER HYDROLASE 05-JUL-02 1J5X TITLE CRYSTAL STRUCTURE OF GLUCOSAMINE-6-PHOSPHATE DEAMINASE (TM0813) FROM TITLE 2 THERMOTOGA MARITIMA AT 1.8 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSAMINE-6-PHOSPHATE DEAMINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.99.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, TM0813, GLUCOSAMINE-6-PHOSPHATE DEAMINASE, JCSG, KEYWDS 2 PSI, PROTEIN STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 18-JUL-18 1J5X 1 REMARK REVDAT 7 13-JUL-11 1J5X 1 VERSN REVDAT 6 24-FEB-09 1J5X 1 VERSN REVDAT 5 28-MAR-06 1J5X 1 JRNL REVDAT 4 18-JAN-05 1J5X 1 AUTHOR KEYWDS REMARK REVDAT 3 10-AUG-04 1J5X 1 HEADER TITLE JRNL COMPND REVDAT 3 2 1 KEYWDS REVDAT 2 08-JUL-03 1J5X 1 REMARK REVDAT 1 31-JUL-02 1J5X 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF GLUCOSAMINE-6-PHOSPHATE DEAMINASE JRNL TITL 2 (TM0813) FROM THERMOTOGA MARITIMA AT 1.8 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : STANDARD CNS DICTIONARY/ENGH AND HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1914 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 38 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 912 REMARK 3 BIN R VALUE (WORKING SET) : 0.2432 REMARK 3 BIN FREE R VALUE : 0.2985 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 47 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2517 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.17300 REMARK 3 B22 (A**2) : -4.17300 REMARK 3 B33 (A**2) : 8.34500 REMARK 3 B12 (A**2) : -1.47900 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.021 REMARK 3 BOND ANGLES (DEGREES) : 1.940 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.935 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.512 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.224 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.141 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : BULK SOLVENT CORRECTION REMARK 3 KSOL : 64.80 REMARK 3 BSOL : 0.37 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1J5X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1000001652. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97980, 0.93218, 0.97999 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, CCP4 REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39495 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.054 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 18.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 26.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50600 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, CCP4, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG-400, 0.1 M IMIDAZOLE PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 293K, PH REMARK 280 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.84000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.68000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.68000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.84000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 109.44000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 63.18521 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 42.84000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 331 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 485 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 617 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 THR A 29 REMARK 465 GLU A 30 REMARK 465 ILE A 31 REMARK 465 PHE A 32 REMARK 465 SER A 33 REMARK 465 GLU A 34 REMARK 465 GLN A 36 REMARK 465 LYS A 37 REMARK 465 ASN A 38 REMARK 465 LEU A 39 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 41 CG OD1 OD2 REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 ARG A 89 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 229 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 340 O HOH A 510 2.07 REMARK 500 O PRO A 321 O HOH A 523 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 612 O HOH A 612 6765 1.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 26 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 173 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 149 -89.92 -132.17 REMARK 500 SER A 209 -123.80 49.80 REMARK 500 HIS A 323 -10.70 61.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 52 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282683 RELATED DB: TARGETDB DBREF 1J5X A 1 330 UNP Q9WZS0 Q9WZS0_THEMA 1 330 SEQADV 1J5X MSE A -11 UNP Q9WZS0 LEADER SEQUENCE SEQADV 1J5X GLY A -10 UNP Q9WZS0 LEADER SEQUENCE SEQADV 1J5X SER A -9 UNP Q9WZS0 LEADER SEQUENCE SEQADV 1J5X ASP A -8 UNP Q9WZS0 LEADER SEQUENCE SEQADV 1J5X LYS A -7 UNP Q9WZS0 LEADER SEQUENCE SEQADV 1J5X ILE A -6 UNP Q9WZS0 LEADER SEQUENCE SEQADV 1J5X HIS A -5 UNP Q9WZS0 EXPRESSION TAG SEQADV 1J5X HIS A -4 UNP Q9WZS0 EXPRESSION TAG SEQADV 1J5X HIS A -3 UNP Q9WZS0 EXPRESSION TAG SEQADV 1J5X HIS A -2 UNP Q9WZS0 EXPRESSION TAG SEQADV 1J5X HIS A -1 UNP Q9WZS0 EXPRESSION TAG SEQADV 1J5X HIS A 0 UNP Q9WZS0 EXPRESSION TAG SEQADV 1J5X MSE A 1 UNP Q9WZS0 MET 1 MODIFIED RESIDUE SEQADV 1J5X MSE A 148 UNP Q9WZS0 MET 148 MODIFIED RESIDUE SEQADV 1J5X MSE A 154 UNP Q9WZS0 MET 154 MODIFIED RESIDUE SEQADV 1J5X MSE A 160 UNP Q9WZS0 MET 160 MODIFIED RESIDUE SEQADV 1J5X MSE A 208 UNP Q9WZS0 MET 208 MODIFIED RESIDUE SEQADV 1J5X MSE A 225 UNP Q9WZS0 MET 225 MODIFIED RESIDUE SEQADV 1J5X MSE A 254 UNP Q9WZS0 MET 254 MODIFIED RESIDUE SEQADV 1J5X MSE A 260 UNP Q9WZS0 MET 260 MODIFIED RESIDUE SEQRES 1 A 342 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 342 SER LYS THR LEU LYS GLU ILE THR ASP GLN LYS ASN GLU SEQRES 3 A 342 LEU LYS LYS PHE PHE GLU ASN PHE VAL LEU ASN LEU GLU SEQRES 4 A 342 LYS THR GLU ILE PHE SER GLU ILE GLN LYS ASN LEU THR SEQRES 5 A 342 ASP GLU VAL LEU PHE VAL GLY CYS GLY SER SER TYR ASN SEQRES 6 A 342 LEU ALA LEU THR ILE SER TYR TYR PHE GLU ARG VAL LEU SEQRES 7 A 342 LYS ILE ARG THR LYS ALA ILE PRO ALA GLY GLU VAL ALA SEQRES 8 A 342 PHE GLN LYS ILE PRO ASP LEU GLU GLU ARG GLY LEU ALA SEQRES 9 A 342 PHE LEU PHE SER ARG THR GLY ASN THR THR GLU VAL LEU SEQRES 10 A 342 LEU ALA ASN ASP VAL LEU LYS LYS ARG ASN HIS ARG THR SEQRES 11 A 342 ILE GLY ILE THR ILE GLU GLU GLU SER ARG LEU ALA LYS SEQRES 12 A 342 GLU SER ASP LEU PRO LEU VAL PHE PRO VAL ARG GLU GLU SEQRES 13 A 342 ALA ILE VAL MSE THR LYS SER PHE SER MSE ILE LEU LEU SEQRES 14 A 342 SER LEU MSE PHE LEU ALA ASP LYS ILE ALA GLY ASN SER SEQRES 15 A 342 THR GLU ARG PHE SER GLU LEU VAL GLY TYR SER PRO GLU SEQRES 16 A 342 PHE PHE ASP ILE SER TRP LYS VAL ILE GLU LYS ILE ASP SEQRES 17 A 342 LEU LYS GLU HIS ASP HIS PHE VAL PHE LEU GLY MSE SER SEQRES 18 A 342 GLU PHE PHE GLY VAL SER LEU GLU SER ALA LEU LYS CYS SEQRES 19 A 342 ILE GLU MSE SER LEU THR PHE SER GLU ALA TYR SER THR SEQRES 20 A 342 LEU GLU TYR ARG HIS GLY PRO LYS ALA LEU VAL LYS LYS SEQRES 21 A 342 GLY THR LEU VAL PHE MSE GLN LYS VAL SER GLY MSE ASP SEQRES 22 A 342 GLU GLN GLU LYS ARG LEU ARG LYS GLU LEU GLU SER LEU SEQRES 23 A 342 GLY ALA THR VAL LEU GLU VAL GLY GLU GLY GLY ASP ILE SEQRES 24 A 342 PRO VAL SER ASN ASP TRP LYS SER ALA PHE LEU ARG THR SEQRES 25 A 342 VAL PRO ALA GLN ILE LEU GLY TYR GLN LYS ALA ILE SER SEQRES 26 A 342 ARG GLY ILE SER PRO ASP LYS PRO PRO HIS LEU GLU LYS SEQRES 27 A 342 THR VAL VAL LEU MODRES 1J5X MSE A 148 MET SELENOMETHIONINE MODRES 1J5X MSE A 154 MET SELENOMETHIONINE MODRES 1J5X MSE A 160 MET SELENOMETHIONINE MODRES 1J5X MSE A 208 MET SELENOMETHIONINE MODRES 1J5X MSE A 225 MET SELENOMETHIONINE MODRES 1J5X MSE A 254 MET SELENOMETHIONINE MODRES 1J5X MSE A 260 MET SELENOMETHIONINE HET MSE A 148 8 HET MSE A 154 8 HET MSE A 160 8 HET MSE A 208 8 HET MSE A 225 8 HET MSE A 254 8 HET MSE A 260 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 HOH *294(H2 O) HELIX 1 1 SER A 2 GLU A 14 1 13 HELIX 2 2 GLU A 14 PHE A 22 1 9 HELIX 3 3 VAL A 23 LEU A 26 5 4 HELIX 4 4 GLY A 49 LYS A 67 1 19 HELIX 5 5 ALA A 75 PHE A 80 1 6 HELIX 6 6 THR A 101 ARG A 114 1 14 HELIX 7 7 SER A 127 SER A 133 1 7 HELIX 8 8 THR A 149 GLY A 168 1 20 HELIX 9 9 THR A 171 LYS A 194 1 24 HELIX 10 10 ILE A 195 ILE A 195 5 1 HELIX 11 11 ASP A 196 HIS A 200 5 5 HELIX 12 12 SER A 209 LEU A 227 1 19 HELIX 13 13 SER A 234 HIS A 240 5 7 HELIX 14 14 GLY A 241 VAL A 246 5 6 HELIX 15 15 MSE A 260 LEU A 274 1 15 HELIX 16 16 ASP A 292 ARG A 299 5 8 HELIX 17 17 THR A 300 GLY A 315 1 16 SHEET 1 A 5 ARG A 69 PRO A 74 0 SHEET 2 A 5 GLU A 42 GLY A 47 1 N PHE A 45 O ILE A 73 SHEET 3 A 5 GLY A 90 PHE A 95 1 O PHE A 93 N VAL A 46 SHEET 4 A 5 HIS A 116 THR A 122 1 O ILE A 119 N LEU A 94 SHEET 5 A 5 LEU A 135 VAL A 138 1 O LEU A 137 N GLY A 120 SHEET 1 B 4 PHE A 229 TYR A 233 0 SHEET 2 B 4 HIS A 202 LEU A 206 1 N PHE A 205 O GLU A 231 SHEET 3 B 4 THR A 250 GLN A 255 1 O LEU A 251 N HIS A 202 SHEET 4 B 4 THR A 277 VAL A 281 1 O VAL A 281 N MSE A 254 LINK C VAL A 147 N MSE A 148 1555 1555 1.34 LINK C MSE A 148 N THR A 149 1555 1555 1.35 LINK C SER A 153 N MSE A 154 1555 1555 1.34 LINK C MSE A 154 N ILE A 155 1555 1555 1.34 LINK C LEU A 159 N MSE A 160 1555 1555 1.34 LINK C MSE A 160 N PHE A 161 1555 1555 1.33 LINK C GLY A 207 N MSE A 208 1555 1555 1.34 LINK C MSE A 208 N SER A 209 1555 1555 1.34 LINK C GLU A 224 N MSE A 225 1555 1555 1.33 LINK C MSE A 225 N SER A 226 1555 1555 1.32 LINK C PHE A 253 N MSE A 254 1555 1555 1.32 LINK C MSE A 254 N GLN A 255 1555 1555 1.34 LINK C GLY A 259 N MSE A 260 1555 1555 1.34 LINK C MSE A 260 N ASP A 261 1555 1555 1.32 CRYST1 72.960 72.960 128.520 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013706 0.007913 0.000000 0.00000 SCALE2 0.000000 0.015826 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007781 0.00000 MASTER 373 0 7 17 9 0 0 6 0 0 0 27 END