HEADER TRANSFERASE 04-FEB-03 1J3L TITLE STRUCTURE OF THE RNA-PROCESSING INHIBITOR RRAA FROM THERMUS TITLE 2 THERMOPHILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEMETHYLMENAQUINONE METHYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 EC: 2.1.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 STRAIN: HD8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS VITAMINE K2, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.H.REHSE,M.MIYANO,T.H.TAHIROV,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 24-FEB-09 1J3L 1 VERSN REVDAT 2 08-FEB-05 1J3L 1 AUTHOR JRNL KEYWDS REMARK REVDAT 2 2 1 TITLE REVDAT 1 17-FEB-04 1J3L 0 JRNL AUTH P.H.REHSE,C.KUROISHI,T.H.TAHIROV JRNL TITL STRUCTURE OF THE RNA-PROCESSING INHIBITOR RRAA JRNL TITL 2 FROM THERMUS THERMOPHILIS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 1997 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 15502308 JRNL DOI 10.1107/S0907444904021146 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 231118.500 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.3 REMARK 3 NUMBER OF REFLECTIONS : 66983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3996 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10097 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 709 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7291 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 398 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.48000 REMARK 3 B22 (A**2) : -3.20000 REMARK 3 B33 (A**2) : 3.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.30 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.80 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.560 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.010 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.700 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.390 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 42.21 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FOLLOWING RESIDUES HAVE BEEN REMARK 3 BUILT INTO WEAK DENSITY AND THEREFORE SHOULD BE INTERPRETTED REMARK 3 WITH CAUTION: A1, B160-164, C159-161, D158-163, E158-161 AND REMARK 3 F154:157 REMARK 4 REMARK 4 1J3L COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-FEB-03. REMARK 100 THE RCSB ID CODE IS RCSB005587. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900, 0.97925, 0.97000 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 191090 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 38.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.050 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.43200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, MAGNESIUM CHLORIDE, TRIS- REMARK 280 CL, PH 8.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.15950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 135.15950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.93600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.53400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.93600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.53400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 135.15950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.93600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.53400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 135.15950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.93600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.53400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER, TWO OF WHICH ARE IN REMARK 300 THE ASSYMETRIC UNIT. TRIMER 1 IS MADE UP OF CHAINS A,B AND C, REMARK 300 TRIMER 2 IS MADE UP OF CHAINS D, E AND F. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1053 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 228 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER C 162 REMARK 465 GLY C 163 REMARK 465 GLY C 164 REMARK 465 SER F 158 REMARK 465 GLY F 159 REMARK 465 VAL F 160 REMARK 465 ARG F 161 REMARK 465 SER F 162 REMARK 465 GLY F 163 REMARK 465 GLY F 164 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 162 CB OG REMARK 470 VAL B 160 CB CG1 CG2 REMARK 470 PRO F 157 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 -147.06 -153.48 REMARK 500 ALA A 3 157.79 -38.16 REMARK 500 ARG A 161 -42.82 -151.81 REMARK 500 SER A 162 11.63 167.35 REMARK 500 GLU B 2 -105.67 -80.24 REMARK 500 TYR B 12 72.63 -118.00 REMARK 500 SER B 158 33.83 -62.70 REMARK 500 VAL B 160 38.73 -168.90 REMARK 500 ARG B 161 -161.36 35.93 REMARK 500 SER B 162 -53.63 66.88 REMARK 500 PRO C 105 48.22 -68.19 REMARK 500 GLU C 121 -68.44 -93.63 REMARK 500 ASP C 127 52.47 39.09 REMARK 500 SER C 158 -165.60 -123.01 REMARK 500 VAL C 160 -71.23 -45.62 REMARK 500 GLU D 2 -123.61 177.18 REMARK 500 ALA D 3 109.49 56.08 REMARK 500 TYR D 12 73.58 -116.26 REMARK 500 LEU D 38 125.97 -171.04 REMARK 500 ALA D 56 96.85 -17.36 REMARK 500 LEU D 73 131.25 -178.26 REMARK 500 ASP D 97 40.50 73.91 REMARK 500 PRO D 105 57.70 -68.28 REMARK 500 GLU D 147 -5.95 -45.98 REMARK 500 PRO D 157 -107.15 -85.96 REMARK 500 SER D 158 -171.68 73.88 REMARK 500 ARG D 161 49.52 -157.21 REMARK 500 ALA E 3 109.93 64.26 REMARK 500 THR E 37 171.13 -50.07 REMARK 500 LEU E 38 116.27 -176.79 REMARK 500 VAL E 40 159.12 178.17 REMARK 500 ALA E 45 -72.26 -30.68 REMARK 500 LEU E 51 19.29 -67.89 REMARK 500 GLU E 53 13.00 -65.43 REMARK 500 GLU E 54 146.90 41.56 REMARK 500 ALA E 56 106.73 54.10 REMARK 500 ALA E 78 -72.41 -46.08 REMARK 500 LYS E 84 76.37 -108.29 REMARK 500 TRP E 86 122.06 -170.48 REMARK 500 ASP E 97 48.26 70.45 REMARK 500 PRO E 105 34.90 -65.46 REMARK 500 GLU E 121 -87.55 -59.10 REMARK 500 LYS E 131 76.96 -162.42 REMARK 500 PRO E 154 -36.20 -38.78 REMARK 500 PRO E 156 158.01 -36.05 REMARK 500 PRO E 157 -164.38 -54.39 REMARK 500 VAL E 160 -70.46 -133.85 REMARK 500 SER E 162 -63.51 -155.32 REMARK 500 ALA F 3 97.54 66.76 REMARK 500 TYR F 12 54.75 -140.46 REMARK 500 PRO F 13 -17.15 -40.30 REMARK 500 PHE F 31 145.26 -173.10 REMARK 500 ASP F 43 124.36 -170.75 REMARK 500 GLU F 54 110.98 175.44 REMARK 500 ALA F 56 85.23 59.15 REMARK 500 TRP F 86 124.50 -25.39 REMARK 500 ASP F 97 53.14 73.47 REMARK 500 PRO F 105 38.13 -73.36 REMARK 500 PRO F 115 -74.98 -64.39 REMARK 500 LYS F 120 48.78 -143.70 REMARK 500 ASP F 127 4.62 48.25 REMARK 500 ASP F 146 -172.59 -172.89 REMARK 500 GLU F 147 -3.88 -52.57 REMARK 500 PRO F 156 176.15 -45.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 155 OE1 REMARK 620 2 ASP D 97 OD2 90.3 REMARK 620 3 GLU D 100 OE2 143.4 93.5 REMARK 620 4 HOH D 191 O 81.1 51.5 128.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1002 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003000249 RELATED DB: TARGETDB DBREF 1J3L A 1 164 UNP P83846 P83846_THETH 1 164 DBREF 1J3L B 1 164 UNP P83846 P83846_THETH 1 164 DBREF 1J3L C 1 164 UNP P83846 P83846_THETH 1 164 DBREF 1J3L D 1 164 UNP P83846 P83846_THETH 1 164 DBREF 1J3L E 1 164 UNP P83846 P83846_THETH 1 164 DBREF 1J3L F 1 164 UNP P83846 P83846_THETH 1 164 SEQRES 1 A 164 MET GLU ALA ARG THR THR ASP LEU SER ASP LEU TYR PRO SEQRES 2 A 164 GLU GLY GLU ALA LEU PRO MSE VAL PHE LYS SER PHE GLY SEQRES 3 A 164 GLY ARG ALA ARG PHE ALA GLY ARG VAL ARG THR LEU ARG SEQRES 4 A 164 VAL PHE GLU ASP ASN ALA LEU VAL ARG LYS VAL LEU GLU SEQRES 5 A 164 GLU GLU GLY ALA GLY GLN VAL LEU PHE VAL ASP GLY GLY SEQRES 6 A 164 GLY SER LEU ARG THR ALA LEU LEU GLY GLY ASN LEU ALA SEQRES 7 A 164 ARG ARG ALA TRP GLU LYS GLY TRP ALA GLY VAL VAL VAL SEQRES 8 A 164 HIS GLY ALA VAL ARG ASP THR GLU GLU LEU ARG GLU VAL SEQRES 9 A 164 PRO ILE GLY LEU LEU ALA LEU ALA ALA THR PRO LYS LYS SEQRES 10 A 164 SER ALA LYS GLU GLY LYS GLY GLU VAL ASP VAL PRO LEU SEQRES 11 A 164 LYS VAL LEU GLY VAL GLU VAL LEU PRO GLY SER PHE LEU SEQRES 12 A 164 LEU ALA ASP GLU ASP GLY LEU LEU LEU LEU PRO GLU PRO SEQRES 13 A 164 PRO SER GLY VAL ARG SER GLY GLY SEQRES 1 B 164 MET GLU ALA ARG THR THR ASP LEU SER ASP LEU TYR PRO SEQRES 2 B 164 GLU GLY GLU ALA LEU PRO MSE VAL PHE LYS SER PHE GLY SEQRES 3 B 164 GLY ARG ALA ARG PHE ALA GLY ARG VAL ARG THR LEU ARG SEQRES 4 B 164 VAL PHE GLU ASP ASN ALA LEU VAL ARG LYS VAL LEU GLU SEQRES 5 B 164 GLU GLU GLY ALA GLY GLN VAL LEU PHE VAL ASP GLY GLY SEQRES 6 B 164 GLY SER LEU ARG THR ALA LEU LEU GLY GLY ASN LEU ALA SEQRES 7 B 164 ARG ARG ALA TRP GLU LYS GLY TRP ALA GLY VAL VAL VAL SEQRES 8 B 164 HIS GLY ALA VAL ARG ASP THR GLU GLU LEU ARG GLU VAL SEQRES 9 B 164 PRO ILE GLY LEU LEU ALA LEU ALA ALA THR PRO LYS LYS SEQRES 10 B 164 SER ALA LYS GLU GLY LYS GLY GLU VAL ASP VAL PRO LEU SEQRES 11 B 164 LYS VAL LEU GLY VAL GLU VAL LEU PRO GLY SER PHE LEU SEQRES 12 B 164 LEU ALA ASP GLU ASP GLY LEU LEU LEU LEU PRO GLU PRO SEQRES 13 B 164 PRO SER GLY VAL ARG SER GLY GLY SEQRES 1 C 164 MET GLU ALA ARG THR THR ASP LEU SER ASP LEU TYR PRO SEQRES 2 C 164 GLU GLY GLU ALA LEU PRO MSE VAL PHE LYS SER PHE GLY SEQRES 3 C 164 GLY ARG ALA ARG PHE ALA GLY ARG VAL ARG THR LEU ARG SEQRES 4 C 164 VAL PHE GLU ASP ASN ALA LEU VAL ARG LYS VAL LEU GLU SEQRES 5 C 164 GLU GLU GLY ALA GLY GLN VAL LEU PHE VAL ASP GLY GLY SEQRES 6 C 164 GLY SER LEU ARG THR ALA LEU LEU GLY GLY ASN LEU ALA SEQRES 7 C 164 ARG ARG ALA TRP GLU LYS GLY TRP ALA GLY VAL VAL VAL SEQRES 8 C 164 HIS GLY ALA VAL ARG ASP THR GLU GLU LEU ARG GLU VAL SEQRES 9 C 164 PRO ILE GLY LEU LEU ALA LEU ALA ALA THR PRO LYS LYS SEQRES 10 C 164 SER ALA LYS GLU GLY LYS GLY GLU VAL ASP VAL PRO LEU SEQRES 11 C 164 LYS VAL LEU GLY VAL GLU VAL LEU PRO GLY SER PHE LEU SEQRES 12 C 164 LEU ALA ASP GLU ASP GLY LEU LEU LEU LEU PRO GLU PRO SEQRES 13 C 164 PRO SER GLY VAL ARG SER GLY GLY SEQRES 1 D 164 MET GLU ALA ARG THR THR ASP LEU SER ASP LEU TYR PRO SEQRES 2 D 164 GLU GLY GLU ALA LEU PRO MSE VAL PHE LYS SER PHE GLY SEQRES 3 D 164 GLY ARG ALA ARG PHE ALA GLY ARG VAL ARG THR LEU ARG SEQRES 4 D 164 VAL PHE GLU ASP ASN ALA LEU VAL ARG LYS VAL LEU GLU SEQRES 5 D 164 GLU GLU GLY ALA GLY GLN VAL LEU PHE VAL ASP GLY GLY SEQRES 6 D 164 GLY SER LEU ARG THR ALA LEU LEU GLY GLY ASN LEU ALA SEQRES 7 D 164 ARG ARG ALA TRP GLU LYS GLY TRP ALA GLY VAL VAL VAL SEQRES 8 D 164 HIS GLY ALA VAL ARG ASP THR GLU GLU LEU ARG GLU VAL SEQRES 9 D 164 PRO ILE GLY LEU LEU ALA LEU ALA ALA THR PRO LYS LYS SEQRES 10 D 164 SER ALA LYS GLU GLY LYS GLY GLU VAL ASP VAL PRO LEU SEQRES 11 D 164 LYS VAL LEU GLY VAL GLU VAL LEU PRO GLY SER PHE LEU SEQRES 12 D 164 LEU ALA ASP GLU ASP GLY LEU LEU LEU LEU PRO GLU PRO SEQRES 13 D 164 PRO SER GLY VAL ARG SER GLY GLY SEQRES 1 E 164 MET GLU ALA ARG THR THR ASP LEU SER ASP LEU TYR PRO SEQRES 2 E 164 GLU GLY GLU ALA LEU PRO MSE VAL PHE LYS SER PHE GLY SEQRES 3 E 164 GLY ARG ALA ARG PHE ALA GLY ARG VAL ARG THR LEU ARG SEQRES 4 E 164 VAL PHE GLU ASP ASN ALA LEU VAL ARG LYS VAL LEU GLU SEQRES 5 E 164 GLU GLU GLY ALA GLY GLN VAL LEU PHE VAL ASP GLY GLY SEQRES 6 E 164 GLY SER LEU ARG THR ALA LEU LEU GLY GLY ASN LEU ALA SEQRES 7 E 164 ARG ARG ALA TRP GLU LYS GLY TRP ALA GLY VAL VAL VAL SEQRES 8 E 164 HIS GLY ALA VAL ARG ASP THR GLU GLU LEU ARG GLU VAL SEQRES 9 E 164 PRO ILE GLY LEU LEU ALA LEU ALA ALA THR PRO LYS LYS SEQRES 10 E 164 SER ALA LYS GLU GLY LYS GLY GLU VAL ASP VAL PRO LEU SEQRES 11 E 164 LYS VAL LEU GLY VAL GLU VAL LEU PRO GLY SER PHE LEU SEQRES 12 E 164 LEU ALA ASP GLU ASP GLY LEU LEU LEU LEU PRO GLU PRO SEQRES 13 E 164 PRO SER GLY VAL ARG SER GLY GLY SEQRES 1 F 164 MET GLU ALA ARG THR THR ASP LEU SER ASP LEU TYR PRO SEQRES 2 F 164 GLU GLY GLU ALA LEU PRO MSE VAL PHE LYS SER PHE GLY SEQRES 3 F 164 GLY ARG ALA ARG PHE ALA GLY ARG VAL ARG THR LEU ARG SEQRES 4 F 164 VAL PHE GLU ASP ASN ALA LEU VAL ARG LYS VAL LEU GLU SEQRES 5 F 164 GLU GLU GLY ALA GLY GLN VAL LEU PHE VAL ASP GLY GLY SEQRES 6 F 164 GLY SER LEU ARG THR ALA LEU LEU GLY GLY ASN LEU ALA SEQRES 7 F 164 ARG ARG ALA TRP GLU LYS GLY TRP ALA GLY VAL VAL VAL SEQRES 8 F 164 HIS GLY ALA VAL ARG ASP THR GLU GLU LEU ARG GLU VAL SEQRES 9 F 164 PRO ILE GLY LEU LEU ALA LEU ALA ALA THR PRO LYS LYS SEQRES 10 F 164 SER ALA LYS GLU GLY LYS GLY GLU VAL ASP VAL PRO LEU SEQRES 11 F 164 LYS VAL LEU GLY VAL GLU VAL LEU PRO GLY SER PHE LEU SEQRES 12 F 164 LEU ALA ASP GLU ASP GLY LEU LEU LEU LEU PRO GLU PRO SEQRES 13 F 164 PRO SER GLY VAL ARG SER GLY GLY MODRES 1J3L MSE A 20 MET SELENOMETHIONINE MODRES 1J3L MSE B 20 MET SELENOMETHIONINE MODRES 1J3L MSE C 20 MET SELENOMETHIONINE MODRES 1J3L MSE D 20 MET SELENOMETHIONINE MODRES 1J3L MSE E 20 MET SELENOMETHIONINE MODRES 1J3L MSE F 20 MET SELENOMETHIONINE HET MSE A 20 8 HET MSE B 20 8 HET MSE C 20 8 HET MSE D 20 8 HET MSE E 20 8 HET MSE F 20 8 HET MG A1001 1 HET CL A1002 1 HET CL B1003 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 7 MG MG 2+ FORMUL 8 CL 2(CL 1-) FORMUL 10 HOH *398(H2 O) HELIX 1 1 ARG A 4 TYR A 12 1 9 HELIX 2 2 ASN A 44 GLU A 52 1 9 HELIX 3 3 GLY A 74 LYS A 84 1 11 HELIX 4 4 ASP A 97 ARG A 102 1 6 HELIX 5 5 ARG B 4 TYR B 12 1 9 HELIX 6 6 ASN B 44 GLU B 52 1 9 HELIX 7 7 GLY B 74 LYS B 84 1 11 HELIX 8 8 ASP B 97 ARG B 102 1 6 HELIX 9 9 ARG C 4 TYR C 12 1 9 HELIX 10 10 ASN C 44 GLU C 53 1 10 HELIX 11 11 GLY C 74 LYS C 84 1 11 HELIX 12 12 ASP C 97 ARG C 102 1 6 HELIX 13 13 THR D 6 TYR D 12 1 7 HELIX 14 14 ASN D 44 GLU D 53 1 10 HELIX 15 15 GLY D 74 LYS D 84 1 11 HELIX 16 16 ASP D 97 ARG D 102 1 6 HELIX 17 17 ARG E 4 TYR E 12 1 9 HELIX 18 18 ASN E 44 LEU E 51 1 8 HELIX 19 19 GLY E 74 LYS E 84 1 11 HELIX 20 20 ASP E 97 ARG E 102 1 6 HELIX 21 21 ARG F 4 ASP F 10 1 7 HELIX 22 22 ASN F 44 GLU F 52 1 9 HELIX 23 23 GLY F 74 LYS F 84 1 11 HELIX 24 24 ASP F 97 ARG F 102 1 6 SHEET 1 A 6 LYS A 23 SER A 24 0 SHEET 2 A 6 GLY A 107 ALA A 110 -1 O ALA A 110 N LYS A 23 SHEET 3 A 6 GLY A 88 HIS A 92 1 N VAL A 89 O LEU A 109 SHEET 4 A 6 GLN A 58 ASP A 63 1 N VAL A 62 O VAL A 90 SHEET 5 A 6 PHE A 31 ARG A 39 1 N LEU A 38 O ASP A 63 SHEET 6 A 6 GLU A 125 VAL A 126 -1 O GLU A 125 N ARG A 39 SHEET 1 B 8 LYS A 23 SER A 24 0 SHEET 2 B 8 GLY A 107 ALA A 110 -1 O ALA A 110 N LYS A 23 SHEET 3 B 8 GLY A 88 HIS A 92 1 N VAL A 89 O LEU A 109 SHEET 4 B 8 GLN A 58 ASP A 63 1 N VAL A 62 O VAL A 90 SHEET 5 B 8 PHE A 31 ARG A 39 1 N LEU A 38 O ASP A 63 SHEET 6 B 8 PHE A 142 ASP A 146 -1 O LEU A 143 N GLY A 33 SHEET 7 B 8 GLY A 149 LEU A 153 -1 O LEU A 153 N PHE A 142 SHEET 8 B 8 GLU A 16 LEU A 18 -1 N GLU A 16 O LEU A 152 SHEET 1 C 2 ALA A 94 VAL A 95 0 SHEET 2 C 2 ALA A 112 ALA A 113 1 O ALA A 112 N VAL A 95 SHEET 1 D 2 LEU A 130 VAL A 132 0 SHEET 2 D 2 VAL A 135 VAL A 137 -1 O VAL A 135 N VAL A 132 SHEET 1 E 6 LYS B 23 SER B 24 0 SHEET 2 E 6 GLY B 107 ALA B 113 -1 O ALA B 110 N LYS B 23 SHEET 3 E 6 GLY B 88 VAL B 95 1 N VAL B 91 O LEU B 109 SHEET 4 E 6 GLN B 58 ASP B 63 1 N VAL B 62 O VAL B 90 SHEET 5 E 6 PHE B 31 ARG B 39 1 N LEU B 38 O ASP B 63 SHEET 6 E 6 GLU B 125 VAL B 126 -1 O GLU B 125 N ARG B 39 SHEET 1 F 8 LYS B 23 SER B 24 0 SHEET 2 F 8 GLY B 107 ALA B 113 -1 O ALA B 110 N LYS B 23 SHEET 3 F 8 GLY B 88 VAL B 95 1 N VAL B 91 O LEU B 109 SHEET 4 F 8 GLN B 58 ASP B 63 1 N VAL B 62 O VAL B 90 SHEET 5 F 8 PHE B 31 ARG B 39 1 N LEU B 38 O ASP B 63 SHEET 6 F 8 PHE B 142 ASP B 146 -1 O LEU B 143 N GLY B 33 SHEET 7 F 8 GLY B 149 LEU B 153 -1 O LEU B 153 N PHE B 142 SHEET 8 F 8 GLU B 16 LEU B 18 -1 N GLU B 16 O LEU B 152 SHEET 1 G 2 LEU B 130 VAL B 132 0 SHEET 2 G 2 VAL B 135 VAL B 137 -1 O VAL B 135 N VAL B 132 SHEET 1 H 8 GLU C 16 LEU C 18 0 SHEET 2 H 8 GLY C 149 LEU C 153 -1 O LEU C 152 N GLU C 16 SHEET 3 H 8 PHE C 142 ASP C 146 -1 N PHE C 142 O LEU C 153 SHEET 4 H 8 PHE C 31 ARG C 39 -1 N GLY C 33 O LEU C 143 SHEET 5 H 8 VAL C 59 ASP C 63 1 O PHE C 61 N ARG C 36 SHEET 6 H 8 GLY C 88 VAL C 95 1 O VAL C 90 N VAL C 62 SHEET 7 H 8 GLY C 107 ALA C 113 1 O LEU C 109 N VAL C 91 SHEET 8 H 8 LYS C 23 SER C 24 -1 N LYS C 23 O ALA C 110 SHEET 1 I 5 GLU C 16 LEU C 18 0 SHEET 2 I 5 GLY C 149 LEU C 153 -1 O LEU C 152 N GLU C 16 SHEET 3 I 5 PHE C 142 ASP C 146 -1 N PHE C 142 O LEU C 153 SHEET 4 I 5 PHE C 31 ARG C 39 -1 N GLY C 33 O LEU C 143 SHEET 5 I 5 GLU C 125 VAL C 126 -1 O GLU C 125 N ARG C 39 SHEET 1 J 2 LEU C 130 VAL C 132 0 SHEET 2 J 2 VAL C 135 VAL C 137 -1 O VAL C 135 N VAL C 132 SHEET 1 K 6 LYS D 23 SER D 24 0 SHEET 2 K 6 GLY D 107 ALA D 113 -1 O ALA D 110 N LYS D 23 SHEET 3 K 6 GLY D 88 VAL D 95 1 N VAL D 89 O GLY D 107 SHEET 4 K 6 GLN D 58 ASP D 63 1 N VAL D 62 O VAL D 90 SHEET 5 K 6 PHE D 31 ARG D 39 1 N ARG D 34 O VAL D 59 SHEET 6 K 6 GLU D 125 VAL D 126 -1 O GLU D 125 N ARG D 39 SHEET 1 L 8 LYS D 23 SER D 24 0 SHEET 2 L 8 GLY D 107 ALA D 113 -1 O ALA D 110 N LYS D 23 SHEET 3 L 8 GLY D 88 VAL D 95 1 N VAL D 89 O GLY D 107 SHEET 4 L 8 GLN D 58 ASP D 63 1 N VAL D 62 O VAL D 90 SHEET 5 L 8 PHE D 31 ARG D 39 1 N ARG D 34 O VAL D 59 SHEET 6 L 8 PHE D 142 ASP D 146 -1 O ALA D 145 N PHE D 31 SHEET 7 L 8 GLY D 149 LEU D 153 -1 O GLY D 149 N ASP D 146 SHEET 8 L 8 GLU D 16 LEU D 18 -1 N GLU D 16 O LEU D 152 SHEET 1 M 2 LEU D 130 LYS D 131 0 SHEET 2 M 2 GLU D 136 VAL D 137 -1 O VAL D 137 N LEU D 130 SHEET 1 N 8 LYS E 23 SER E 24 0 SHEET 2 N 8 GLY E 107 ALA E 113 -1 O ALA E 110 N LYS E 23 SHEET 3 N 8 GLY E 88 VAL E 95 1 N VAL E 91 O LEU E 109 SHEET 4 N 8 GLN E 58 ASP E 63 1 N LEU E 60 O VAL E 90 SHEET 5 N 8 PHE E 31 VAL E 35 1 N ARG E 34 O VAL E 59 SHEET 6 N 8 PHE E 142 ASP E 146 -1 O ALA E 145 N PHE E 31 SHEET 7 N 8 GLY E 149 LEU E 153 -1 O LEU E 153 N PHE E 142 SHEET 8 N 8 GLU E 16 PRO E 19 -1 N GLU E 16 O LEU E 152 SHEET 1 O 6 LYS E 23 SER E 24 0 SHEET 2 O 6 GLY E 107 ALA E 113 -1 O ALA E 110 N LYS E 23 SHEET 3 O 6 GLY E 88 VAL E 95 1 N VAL E 91 O LEU E 109 SHEET 4 O 6 GLN E 58 ASP E 63 1 N LEU E 60 O VAL E 90 SHEET 5 O 6 LEU E 38 ARG E 39 1 N LEU E 38 O ASP E 63 SHEET 6 O 6 GLU E 125 VAL E 126 -1 O GLU E 125 N ARG E 39 SHEET 1 P 4 GLU F 16 PRO F 19 0 SHEET 2 P 4 GLY F 149 LEU F 153 -1 O LEU F 150 N LEU F 18 SHEET 3 P 4 SER F 141 ASP F 146 -1 N PHE F 142 O LEU F 153 SHEET 4 P 4 PHE F 31 VAL F 35 -1 N GLY F 33 O LEU F 143 SHEET 1 Q 6 LYS F 23 SER F 24 0 SHEET 2 Q 6 LEU F 108 ALA F 113 -1 O ALA F 110 N LYS F 23 SHEET 3 Q 6 VAL F 89 VAL F 95 1 N VAL F 91 O LEU F 109 SHEET 4 Q 6 LEU F 60 ASP F 63 1 N VAL F 62 O HIS F 92 SHEET 5 Q 6 THR F 37 ARG F 39 1 N LEU F 38 O ASP F 63 SHEET 6 Q 6 GLU F 125 VAL F 126 -1 O GLU F 125 N ARG F 39 SHEET 1 R 2 LEU F 130 LYS F 131 0 SHEET 2 R 2 GLU F 136 VAL F 137 -1 O VAL F 137 N LEU F 130 LINK C PRO A 19 N MSE A 20 1555 1555 1.33 LINK C MSE A 20 N VAL A 21 1555 1555 1.33 LINK MG MG A1001 OE1 GLU A 155 1555 1555 2.89 LINK C PRO B 19 N MSE B 20 1555 1555 1.33 LINK C MSE B 20 N VAL B 21 1555 1555 1.33 LINK C PRO C 19 N MSE C 20 1555 1555 1.33 LINK C MSE C 20 N VAL C 21 1555 1555 1.33 LINK C PRO D 19 N MSE D 20 1555 1555 1.33 LINK C MSE D 20 N VAL D 21 1555 1555 1.33 LINK C PRO E 19 N MSE E 20 1555 1555 1.33 LINK C MSE E 20 N VAL E 21 1555 1555 1.33 LINK C PRO F 19 N MSE F 20 1555 1555 1.33 LINK C MSE F 20 N VAL F 21 1555 1555 1.33 LINK MG MG A1001 OD2 ASP D 97 1555 1655 3.00 LINK MG MG A1001 OE2 GLU D 100 1555 1655 2.61 LINK MG MG A1001 O HOH D 191 1555 1655 3.06 SITE 1 AC1 4 GLU A 155 ASP D 97 GLU D 100 HOH D 191 SITE 1 AC2 3 GLY A 74 ASN A 76 LEU A 77 SITE 1 AC3 5 HOH A1011 ARG B 28 ALA B 29 ARG B 30 SITE 2 AC3 5 HOH B1049 CRYST1 61.872 109.068 270.319 90.00 90.00 90.00 C 2 2 21 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016162 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003699 0.00000 MASTER 387 0 9 24 91 0 4 6 0 0 0 78 END