HEADER TRANSFERASE 23-APR-01 1IIM TITLE THYMIDYLYLTRANSFERASE COMPLEXED WITH TTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THYMIDYLYLTRANSFERASE; COMPND 5 EC: 2.7.7.24; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA; SOURCE 3 ORGANISM_TAXID: 28901; SOURCE 4 STRAIN: LT2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.A.BARTON,J.LESNIAK,J.B.BIGGINS,P.D.JEFFREY,J.JIANG,K.R.RAJASHANKAR, AUTHOR 2 J.S.THORSON,D.B.NIKOLOV REVDAT 6 13-JUL-11 1IIM 1 VERSN REVDAT 5 09-FEB-11 1IIM 1 REMARK REVDAT 4 24-FEB-09 1IIM 1 VERSN REVDAT 3 01-APR-03 1IIM 1 JRNL REVDAT 2 30-MAY-01 1IIM 1 JRNL REVDAT 1 09-MAY-01 1IIM 0 JRNL AUTH W.A.BARTON,J.LESNIAK,J.B.BIGGINS,P.D.JEFFREY,J.JIANG, JRNL AUTH 2 K.R.RAJASHANKAR,J.S.THORSON,D.B.NIKOLOV JRNL TITL STRUCTURE, MECHANISM AND ENGINEERING OF A JRNL TITL 2 NUCLEOTIDYLYLTRANSFERASE AS A FIRST STEP TOWARD JRNL TITL 3 GLYCORANDOMIZATION. JRNL REF NAT.STRUCT.BIOL. V. 8 545 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11373625 JRNL DOI 10.1038/88618 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 39043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3893 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4163 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 440 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4514 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 385 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.69000 REMARK 3 B22 (A**2) : -0.69000 REMARK 3 B33 (A**2) : 1.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 52.27 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : TTP.PAR REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : TTP.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE ARE THREE C-TERMINAL RESIDUES IN REMARK 3 THE CRYSTAL FOR WHICH THE AUTHOR DOES NOT SEE CLEAR DENSITY: LYS REMARK 3 290, GLY 291, LEU 292. THERE IS NO DENSITY BEYOND THE CB FOR LYS REMARK 3 154. REMARK 4 REMARK 4 1IIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-01. REMARK 100 THE RCSB ID CODE IS RCSB013303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 19.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, MONO-AMMONIUM DIHYDROGEN REMARK 280 PHOSPHATE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.20500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.03000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.03000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.80750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.03000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.03000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.60250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.03000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.03000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 70.80750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.03000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.03000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.60250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 47.20500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED BY REMARK 300 THE TWO FOLD AXIS: -X -Y -Z+1/2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 17730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 120.06000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 120.06000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 47.20500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 290 REMARK 465 GLY A 291 REMARK 465 LEU A 292 REMARK 465 LYS B 290 REMARK 465 GLY B 291 REMARK 465 LEU B 292 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 LYS B 154 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 147 N - CA - C ANGL. DEV. = -15.2 DEGREES REMARK 500 PRO B 143 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 GLY B 147 N - CA - C ANGL. DEV. = -15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 32 -84.42 68.63 REMARK 500 PRO A 86 69.13 -70.00 REMARK 500 TYR B 32 -75.22 69.61 REMARK 500 PRO B 86 69.62 -65.79 REMARK 500 THR B 227 70.61 -102.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 686 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH B 671 DISTANCE = 6.68 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IIN RELATED DB: PDB REMARK 900 GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE COMPLEXED WITH REMARK 900 UDP-GLUCOSE REMARK 900 RELATED ID: 1MP3 RELATED DB: PDB REMARK 900 RELATED ID: 1MP4 RELATED DB: PDB REMARK 900 RELATED ID: 1MP5 RELATED DB: PDB DBREF 1IIM A 1 292 UNP Q9F7K6 Q9F7K6_9ENTR 1 292 DBREF 1IIM B 1 292 UNP Q9F7K6 Q9F7K6_9ENTR 1 292 SEQADV 1IIM GLN A 26 UNP Q9F7K6 LYS 26 CONFLICT SEQADV 1IIM GLN B 26 UNP Q9F7K6 LYS 26 CONFLICT SEQRES 1 A 292 MET LYS THR ARG LYS GLY ILE ILE LEU ALA GLY GLY SER SEQRES 2 A 292 GLY THR ARG LEU TYR PRO VAL THR MET ALA VAL SER GLN SEQRES 3 A 292 GLN LEU LEU PRO ILE TYR ASP LYS PRO MET ILE TYR TYR SEQRES 4 A 292 PRO LEU SER THR LEU MET LEU ALA GLY ILE ARG ASP ILE SEQRES 5 A 292 LEU ILE ILE SER THR PRO GLN ASP THR PRO ARG PHE GLN SEQRES 6 A 292 GLN LEU LEU GLY ASP GLY SER GLN TRP GLY LEU ASN LEU SEQRES 7 A 292 GLN TYR LYS VAL GLN PRO SER PRO ASP GLY LEU ALA GLN SEQRES 8 A 292 ALA PHE ILE ILE GLY GLU GLU PHE ILE GLY HIS ASP ASP SEQRES 9 A 292 CYS ALA LEU VAL LEU GLY ASP ASN ILE PHE TYR GLY HIS SEQRES 10 A 292 ASP LEU PRO LYS LEU MET GLU ALA ALA VAL ASN LYS GLU SEQRES 11 A 292 SER GLY ALA THR VAL PHE ALA TYR HIS VAL ASN ASP PRO SEQRES 12 A 292 GLU ARG TYR GLY VAL VAL GLU PHE ASP GLN LYS GLY THR SEQRES 13 A 292 ALA VAL SER LEU GLU GLU LYS PRO LEU GLN PRO LYS SER SEQRES 14 A 292 ASN TYR ALA VAL THR GLY LEU TYR PHE TYR ASP ASN SER SEQRES 15 A 292 VAL VAL GLU MET ALA LYS ASN LEU LYS PRO SER ALA ARG SEQRES 16 A 292 GLY GLU LEU GLU ILE THR ASP ILE ASN ARG ILE TYR MET SEQRES 17 A 292 GLU GLN GLY ARG LEU SER VAL ALA MET MET GLY ARG GLY SEQRES 18 A 292 TYR ALA TRP LEU ASP THR GLY THR HIS GLN SER LEU ILE SEQRES 19 A 292 GLU ALA SER ASN PHE ILE ALA THR ILE GLU GLU ARG GLN SEQRES 20 A 292 GLY LEU LYS VAL SER CYS PRO GLU GLU ILE ALA PHE ARG SEQRES 21 A 292 LYS ASN PHE ILE ASN ALA GLN GLN VAL ILE GLU LEU ALA SEQRES 22 A 292 GLY PRO LEU SER LYS ASN ASP TYR GLY LYS TYR LEU LEU SEQRES 23 A 292 LYS MET VAL LYS GLY LEU SEQRES 1 B 292 MET LYS THR ARG LYS GLY ILE ILE LEU ALA GLY GLY SER SEQRES 2 B 292 GLY THR ARG LEU TYR PRO VAL THR MET ALA VAL SER GLN SEQRES 3 B 292 GLN LEU LEU PRO ILE TYR ASP LYS PRO MET ILE TYR TYR SEQRES 4 B 292 PRO LEU SER THR LEU MET LEU ALA GLY ILE ARG ASP ILE SEQRES 5 B 292 LEU ILE ILE SER THR PRO GLN ASP THR PRO ARG PHE GLN SEQRES 6 B 292 GLN LEU LEU GLY ASP GLY SER GLN TRP GLY LEU ASN LEU SEQRES 7 B 292 GLN TYR LYS VAL GLN PRO SER PRO ASP GLY LEU ALA GLN SEQRES 8 B 292 ALA PHE ILE ILE GLY GLU GLU PHE ILE GLY HIS ASP ASP SEQRES 9 B 292 CYS ALA LEU VAL LEU GLY ASP ASN ILE PHE TYR GLY HIS SEQRES 10 B 292 ASP LEU PRO LYS LEU MET GLU ALA ALA VAL ASN LYS GLU SEQRES 11 B 292 SER GLY ALA THR VAL PHE ALA TYR HIS VAL ASN ASP PRO SEQRES 12 B 292 GLU ARG TYR GLY VAL VAL GLU PHE ASP GLN LYS GLY THR SEQRES 13 B 292 ALA VAL SER LEU GLU GLU LYS PRO LEU GLN PRO LYS SER SEQRES 14 B 292 ASN TYR ALA VAL THR GLY LEU TYR PHE TYR ASP ASN SER SEQRES 15 B 292 VAL VAL GLU MET ALA LYS ASN LEU LYS PRO SER ALA ARG SEQRES 16 B 292 GLY GLU LEU GLU ILE THR ASP ILE ASN ARG ILE TYR MET SEQRES 17 B 292 GLU GLN GLY ARG LEU SER VAL ALA MET MET GLY ARG GLY SEQRES 18 B 292 TYR ALA TRP LEU ASP THR GLY THR HIS GLN SER LEU ILE SEQRES 19 B 292 GLU ALA SER ASN PHE ILE ALA THR ILE GLU GLU ARG GLN SEQRES 20 B 292 GLY LEU LYS VAL SER CYS PRO GLU GLU ILE ALA PHE ARG SEQRES 21 B 292 LYS ASN PHE ILE ASN ALA GLN GLN VAL ILE GLU LEU ALA SEQRES 22 B 292 GLY PRO LEU SER LYS ASN ASP TYR GLY LYS TYR LEU LEU SEQRES 23 B 292 LYS MET VAL LYS GLY LEU HET TTP A 501 29 HET TTP B 502 29 HET TTP B 503 29 HET TTP A 504 29 HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE FORMUL 3 TTP 4(C10 H17 N2 O14 P3) FORMUL 7 HOH *385(H2 O) HELIX 1 1 GLY A 14 TYR A 18 5 5 HELIX 2 2 PRO A 19 ALA A 23 5 5 HELIX 3 3 SER A 25 LEU A 28 5 4 HELIX 4 4 ILE A 37 ALA A 47 1 11 HELIX 5 5 ASP A 60 GLY A 69 1 10 HELIX 6 6 GLY A 71 GLY A 75 5 5 HELIX 7 7 GLY A 88 ALA A 90 5 3 HELIX 8 8 GLN A 91 GLY A 96 1 6 HELIX 9 9 GLY A 96 GLY A 101 1 6 HELIX 10 10 ASP A 118 LYS A 129 1 12 HELIX 11 11 ASP A 142 ARG A 145 5 4 HELIX 12 12 SER A 182 LEU A 190 1 9 HELIX 13 13 GLU A 199 GLN A 210 1 12 HELIX 14 14 THR A 229 GLY A 248 1 20 HELIX 15 15 CYS A 253 LYS A 261 1 9 HELIX 16 16 ASN A 265 GLY A 274 1 10 HELIX 17 17 PRO A 275 SER A 277 5 3 HELIX 18 18 ASN A 279 VAL A 289 1 11 HELIX 19 19 GLY B 14 TYR B 18 5 5 HELIX 20 20 SER B 25 LEU B 28 5 4 HELIX 21 21 ILE B 37 ALA B 47 1 11 HELIX 22 22 ASP B 60 GLY B 69 1 10 HELIX 23 23 GLY B 71 GLY B 75 5 5 HELIX 24 24 GLY B 88 ALA B 90 5 3 HELIX 25 25 GLN B 91 GLY B 96 1 6 HELIX 26 26 GLY B 96 GLY B 101 1 6 HELIX 27 27 ASP B 118 ASN B 128 1 11 HELIX 28 28 ASP B 142 ARG B 145 5 4 HELIX 29 29 SER B 182 LEU B 190 1 9 HELIX 30 30 GLU B 199 GLN B 210 1 12 HELIX 31 31 THR B 229 GLY B 248 1 20 HELIX 32 32 CYS B 253 LYS B 261 1 9 HELIX 33 33 ASN B 265 GLY B 274 1 10 HELIX 34 34 PRO B 275 SER B 277 5 3 HELIX 35 35 ASN B 279 VAL B 289 1 11 SHEET 1 A 7 ASN A 77 VAL A 82 0 SHEET 2 A 7 ASP A 51 SER A 56 1 O ILE A 52 N GLN A 79 SHEET 3 A 7 LYS A 5 LEU A 9 1 O GLY A 6 N LEU A 53 SHEET 4 A 7 CYS A 105 LEU A 109 1 N ALA A 106 O LYS A 5 SHEET 5 A 7 TYR A 171 TYR A 179 -1 O GLY A 175 N LEU A 109 SHEET 6 A 7 ALA A 133 HIS A 139 -1 O THR A 134 N PHE A 178 SHEET 7 A 7 LEU A 213 MET A 217 1 N SER A 214 O ALA A 133 SHEET 1 B 2 PRO A 30 ILE A 31 0 SHEET 2 B 2 LYS A 34 PRO A 35 -1 O LYS A 34 N ILE A 31 SHEET 1 C 2 ASN A 112 TYR A 115 0 SHEET 2 C 2 ALA A 223 ASP A 226 -1 N ALA A 223 O TYR A 115 SHEET 1 D 2 GLY A 147 PHE A 151 0 SHEET 2 D 2 ALA A 157 GLU A 162 -1 N VAL A 158 O GLU A 150 SHEET 1 E 3 LEU B 213 MET B 217 0 SHEET 2 E 3 ALA B 133 HIS B 139 1 O ALA B 133 N SER B 214 SHEET 3 E 3 TYR B 171 VAL B 173 -1 N ALA B 172 O TYR B 138 SHEET 1 F 7 LEU B 213 MET B 217 0 SHEET 2 F 7 ALA B 133 HIS B 139 1 O ALA B 133 N SER B 214 SHEET 3 F 7 LEU B 176 TYR B 179 -1 N PHE B 178 O THR B 134 SHEET 4 F 7 CYS B 105 LEU B 109 -1 O CYS B 105 N TYR B 179 SHEET 5 F 7 LYS B 5 LEU B 9 1 O LYS B 5 N ALA B 106 SHEET 6 F 7 ASP B 51 SER B 56 1 O ASP B 51 N GLY B 6 SHEET 7 F 7 ASN B 77 VAL B 82 1 O ASN B 77 N ILE B 52 SHEET 1 G 2 PRO B 30 ILE B 31 0 SHEET 2 G 2 LYS B 34 PRO B 35 -1 O LYS B 34 N ILE B 31 SHEET 1 H 2 ASN B 112 TYR B 115 0 SHEET 2 H 2 ALA B 223 ASP B 226 -1 N ALA B 223 O TYR B 115 SHEET 1 I 2 GLY B 147 PHE B 151 0 SHEET 2 I 2 ALA B 157 GLU B 162 -1 N VAL B 158 O GLU B 150 CISPEP 1 TYR A 18 PRO A 19 0 0.70 CISPEP 2 TYR B 18 PRO B 19 0 -0.18 SITE 1 AC1 20 LEU A 9 GLY A 11 GLY A 12 SER A 13 SITE 2 AC1 20 GLY A 14 THR A 15 ARG A 16 GLN A 26 SITE 3 AC1 20 GLN A 27 GLN A 83 PRO A 86 ASP A 87 SITE 4 AC1 20 GLY A 88 LEU A 89 GLY A 110 ASP A 111 SITE 5 AC1 20 HOH A 521 HOH A 540 HOH A 545 HOH A 590 SITE 1 AC2 20 GLY A 219 ARG A 220 GLY A 221 HOH A 624 SITE 2 AC2 20 LEU B 46 TYR B 115 GLY B 116 HIS B 117 SITE 3 AC2 20 ASP B 118 PRO B 120 SER B 252 GLU B 256 SITE 4 AC2 20 ILE B 257 ARG B 260 HOH B 510 HOH B 524 SITE 5 AC2 20 HOH B 533 HOH B 543 HOH B 586 HOH B 618 SITE 1 AC3 18 LEU B 9 GLY B 11 GLY B 12 SER B 13 SITE 2 AC3 18 GLY B 14 THR B 15 ARG B 16 GLN B 27 SITE 3 AC3 18 GLN B 83 PRO B 86 ASP B 87 GLY B 88 SITE 4 AC3 18 LEU B 89 GLY B 110 ASP B 111 HOH B 558 SITE 5 AC3 18 HOH B 570 HOH B 573 SITE 1 AC4 19 LEU A 46 TYR A 115 GLY A 116 HIS A 117 SITE 2 AC4 19 ASP A 118 PRO A 120 SER A 252 GLU A 256 SITE 3 AC4 19 ILE A 257 ARG A 260 HOH A 505 HOH A 584 SITE 4 AC4 19 HOH A 591 HOH A 605 HOH A 678 GLY B 219 SITE 5 AC4 19 ARG B 220 GLY B 221 HOH B 527 CRYST1 120.060 120.060 94.410 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008329 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010592 0.00000 MASTER 348 0 4 35 29 0 20 6 0 0 0 46 END