HEADER RNA 05-APR-01 1IDV TITLE NMR STRUCTURE OF HCV IRES RNA DOMAIN IIIC COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATITIS C IRES RNA DOMAIN IIIC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHESIZED BY IN VITRO TRANSCRIPTION USING SOURCE 4 T7 RNA POLYMERASE KEYWDS HEPATITIS C RNA, IRES, STEM-LOOP, DOMAIN IIIC EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.KALUARACHCHI,R.RIJNBRAND,S.M.LEMON,D.G.GORENSTEIN REVDAT 3 24-FEB-09 1IDV 1 VERSN REVDAT 2 29-MAR-05 1IDV 1 JRNL REVDAT 1 05-OCT-01 1IDV 0 JRNL AUTH R.RIJNBRAND,V.THIVIYANATHAN,K.KALUARACHCHI, JRNL AUTH 2 S.M.LEMON,D.G.GORENSTEIN JRNL TITL MUTATIONAL AND STRUCTURAL ANALYSIS OF STEM-LOOP JRNL TITL 2 IIIC OF THE HEPATITIS C VIRUS AND GB VIRUS B JRNL TITL 3 INTERNAL RIBOSOME ENTRY SITES JRNL REF J.MOL.BIOL. V. 343 805 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15476802 JRNL DOI 10.1016/J.JMB.2004.08.095 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1, MORASS 2.51 REMARK 3 AUTHORS : BRUNGER (X-PLOR), POST, MEADOWS, LUXON AND REMARK 3 GORENSTEIN (MORASS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 254 NOE REMARK 3 RESTRAINTS, 12 SUGAR PUCKER RESTRAINTS AND 9 HYDROGEN BONDS REMARK 4 REMARK 4 1IDV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-APR-01. REMARK 100 THE RCSB ID CODE IS RCSB013189. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283; 298 REMARK 210 PH : 6.8; 6.8 REMARK 210 IONIC STRENGTH : 10 MM KCL; 10 MM KCL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 10 MM SODIUM PHOSPHATE REMARK 210 BUFFER, 10 MM KCL, 0.05 MM REMARK 210 EDTA, PH 6.8; 10 MM SODIUM REMARK 210 PHOSPHATE BUFFER, 10 MM KCL, REMARK 210 0.05 MM EDTA, PH 6.8 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, 2D TOCSY, REMARK 210 31P HETERO-TOCSY, 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 MOLECULAR DYNAMICS RELAXATION REMARK 210 MATRIX ANALYSIS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE REMARK 210 WITH EXPERIMENTAL NOESY REMARK 210 SPECTRUM REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 10 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 7 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 7 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 7 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 7 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 3 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 3 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 3 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 3 G A 7 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 7 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 4 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 4 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 4 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 4 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 4 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 4 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 4 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 4 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 4 G A 7 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 4 G A 7 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 5 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 5 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 5 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 5 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 5 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 5 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 5 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 5 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 5 G A 7 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 5 G A 7 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 100 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1IDV A 1 10 PDB 1IDV 1IDV 1 10 SEQRES 1 A 10 G G G C G U G C C C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 127 0 0 0 0 0 0 6 0 0 0 1 END