HEADER STRUCTURAL GENOMICS 14-MAR-01 1I8F TITLE THE CRYSTAL STRUCTURE OF A HEPTAMERIC ARCHAEAL SM PROTEIN: TITLE 2 IMPLICATIONS FOR THE EUKARYOTIC SNRNP CORE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SNRNP SM-LIKE PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F, G; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM AEROPHILUM; SOURCE 3 ORGANISM_TAXID: 13773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS BETA BARREL-LIKE SMAP MONOMERS FORM 35-STRANDED BETA-SHEET IN THE KEYWDS 2 HEPTAMER, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR C.MURA,D.CASCIO,M.R.SAWAYA,D.EISENBERG REVDAT 5 21-JUL-21 1I8F 1 REMARK REVDAT 4 13-JUL-11 1I8F 1 VERSN REVDAT 3 24-FEB-09 1I8F 1 VERSN REVDAT 2 01-APR-03 1I8F 1 JRNL REVDAT 1 16-MAY-01 1I8F 0 JRNL AUTH C.MURA,D.CASCIO,M.R.SAWAYA,D.S.EISENBERG JRNL TITL THE CRYSTAL STRUCTURE OF A HEPTAMERIC ARCHAEAL SM PROTEIN: JRNL TITL 2 IMPLICATIONS FOR THE EUKARYOTIC SNRNP CORE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 98 5532 2001 JRNL REFN ISSN 0027-8424 JRNL PMID 11331747 JRNL DOI 10.1073/PNAS.091102298 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 56641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2839 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3815 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.27 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 1.896 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.23 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.225 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: EACH OF THE SEVEN SM MONOMERS PER A.U. REMARK 3 WERE REFINED INDEPENDENTLY IN CNS SINCE IMPOSITION OF RESTRAINTS REMARK 3 OR CONSTRAINTS HINDERED THE REFINEMENT. REMARK 4 REMARK 4 1I8F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-01. REMARK 100 THE DEPOSITION ID IS D_1000013034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : COLLIMATING MIRROR OPTICS, REMARK 200 DOUBLE-SLIT MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62547 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.480 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.72300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG-4000, ACETATE, GLYCEROL, PH 8.3, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.13050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.86900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.13050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.86900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE CONTENTS OF ONE ASYMMETRIC UNIT (I.E. A HEPTAMER) MOST REMARK 300 LIKELY CORRESPOND TO THE BIOLOGICALLY RELEVANT SPECIES FOR THIS REMARK 300 ORGANISM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEPTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ASP A 4 REMARK 465 ILE A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 CYS A 8 REMARK 465 PHE A 9 REMARK 465 GLY A 81 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 ASP B 4 REMARK 465 ILE B 5 REMARK 465 SER B 6 REMARK 465 LYS B 7 REMARK 465 CYS B 8 REMARK 465 GLY B 81 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 SER C 3 REMARK 465 ASP C 4 REMARK 465 ILE C 5 REMARK 465 SER C 6 REMARK 465 LYS C 7 REMARK 465 CYS C 8 REMARK 465 PHE C 9 REMARK 465 ALA C 10 REMARK 465 THR C 11 REMARK 465 LEU C 12 REMARK 465 GLY C 13 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 SER D 3 REMARK 465 ASP D 4 REMARK 465 ILE D 5 REMARK 465 SER D 6 REMARK 465 LYS D 7 REMARK 465 CYS D 8 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 SER E 3 REMARK 465 ASP E 4 REMARK 465 ILE E 5 REMARK 465 SER E 6 REMARK 465 LYS E 7 REMARK 465 CYS E 8 REMARK 465 PHE E 9 REMARK 465 ALA E 10 REMARK 465 GLY E 81 REMARK 465 MET F 1 REMARK 465 ALA F 2 REMARK 465 SER F 3 REMARK 465 ASP F 4 REMARK 465 MET G 1 REMARK 465 ALA G 2 REMARK 465 SER G 3 REMARK 465 ASP G 4 REMARK 465 ILE G 5 REMARK 465 SER G 6 REMARK 465 LYS G 7 REMARK 465 CYS G 8 REMARK 465 PHE G 9 REMARK 465 ALA G 10 REMARK 465 THR G 11 REMARK 465 LEU G 12 REMARK 465 GLY G 81 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 10 CB REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 ARG B 39 CD NE CZ NH1 NH2 REMARK 470 THR C 15 CG2 REMARK 470 LYS C 22 CD CE NZ REMARK 470 HIS C 44 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 62 CG CD CE NZ REMARK 470 PHE D 9 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ALA D 10 CB REMARK 470 GLU D 50 CG REMARK 470 THR E 11 OG1 CG2 REMARK 470 GLN E 17 CB CG CD OE1 NE2 REMARK 470 ASP E 18 CB CG OD1 OD2 REMARK 470 GLN E 43 CB CG CD OE1 NE2 REMARK 470 GLU E 71 CG CD OE1 OE2 REMARK 470 ILE F 5 CB CG1 CG2 CD1 REMARK 470 ARG F 39 CG CD NE CZ NH1 NH2 REMARK 470 GLN F 43 CG CD OE1 NE2 REMARK 470 GLU F 50 CB CG CD OE1 OE2 REMARK 470 ASP G 18 CG OD1 OD2 REMARK 470 GLN G 43 CG CD OE1 NE2 REMARK 470 HIS G 44 CG ND1 CD2 CE1 NE2 REMARK 470 LYS G 62 CG CD CE NZ REMARK 470 GLU G 71 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG E 39 OE1 GLU E 50 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU D 12 N - CA - C ANGL. DEV. = 21.5 DEGREES REMARK 500 PRO D 80 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG G 69 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 11 -66.28 -106.24 REMARK 500 THR D 11 -103.64 -35.19 REMARK 500 PRO D 80 -14.64 -37.41 REMARK 500 SER F 6 -69.40 82.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL G 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL G 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 1005 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B34 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN SM D1D2 HETERODIMER REMARK 900 RELATED ID: 1D3B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN SM D3B HETERODIMER DBREF 1I8F A 1 80 UNP Q8ZYG5 Q8ZYG5_PYRAE 1 80 DBREF 1I8F B 1 80 UNP Q8ZYG5 Q8ZYG5_PYRAE 1 80 DBREF 1I8F C 1 80 UNP Q8ZYG5 Q8ZYG5_PYRAE 1 80 DBREF 1I8F D 1 80 UNP Q8ZYG5 Q8ZYG5_PYRAE 1 80 DBREF 1I8F E 2 80 UNP Q8ZYG5 Q8ZYG5_PYRAE 1 80 DBREF 1I8F F 1 80 UNP Q8ZYG5 Q8ZYG5_PYRAE 1 80 DBREF 1I8F G 1 80 UNP Q8ZYG5 Q8ZYG5_PYRAE 1 80 SEQRES 1 A 81 MET ALA SER ASP ILE SER LYS CYS PHE ALA THR LEU GLY SEQRES 2 A 81 ALA THR LEU GLN ASP SER ILE GLY LYS GLN VAL LEU VAL SEQRES 3 A 81 LYS LEU ARG ASP SER HIS GLU ILE ARG GLY ILE LEU ARG SEQRES 4 A 81 SER PHE ASP GLN HIS VAL ASN LEU LEU LEU GLU ASP ALA SEQRES 5 A 81 GLU GLU ILE ILE ASP GLY ASN VAL TYR LYS ARG GLY THR SEQRES 6 A 81 MET VAL VAL ARG GLY GLU ASN VAL LEU PHE ILE SER PRO SEQRES 7 A 81 VAL PRO GLY SEQRES 1 B 81 MET ALA SER ASP ILE SER LYS CYS PHE ALA THR LEU GLY SEQRES 2 B 81 ALA THR LEU GLN ASP SER ILE GLY LYS GLN VAL LEU VAL SEQRES 3 B 81 LYS LEU ARG ASP SER HIS GLU ILE ARG GLY ILE LEU ARG SEQRES 4 B 81 SER PHE ASP GLN HIS VAL ASN LEU LEU LEU GLU ASP ALA SEQRES 5 B 81 GLU GLU ILE ILE ASP GLY ASN VAL TYR LYS ARG GLY THR SEQRES 6 B 81 MET VAL VAL ARG GLY GLU ASN VAL LEU PHE ILE SER PRO SEQRES 7 B 81 VAL PRO GLY SEQRES 1 C 81 MET ALA SER ASP ILE SER LYS CYS PHE ALA THR LEU GLY SEQRES 2 C 81 ALA THR LEU GLN ASP SER ILE GLY LYS GLN VAL LEU VAL SEQRES 3 C 81 LYS LEU ARG ASP SER HIS GLU ILE ARG GLY ILE LEU ARG SEQRES 4 C 81 SER PHE ASP GLN HIS VAL ASN LEU LEU LEU GLU ASP ALA SEQRES 5 C 81 GLU GLU ILE ILE ASP GLY ASN VAL TYR LYS ARG GLY THR SEQRES 6 C 81 MET VAL VAL ARG GLY GLU ASN VAL LEU PHE ILE SER PRO SEQRES 7 C 81 VAL PRO GLY SEQRES 1 D 81 MET ALA SER ASP ILE SER LYS CYS PHE ALA THR LEU GLY SEQRES 2 D 81 ALA THR LEU GLN ASP SER ILE GLY LYS GLN VAL LEU VAL SEQRES 3 D 81 LYS LEU ARG ASP SER HIS GLU ILE ARG GLY ILE LEU ARG SEQRES 4 D 81 SER PHE ASP GLN HIS VAL ASN LEU LEU LEU GLU ASP ALA SEQRES 5 D 81 GLU GLU ILE ILE ASP GLY ASN VAL TYR LYS ARG GLY THR SEQRES 6 D 81 MET VAL VAL ARG GLY GLU ASN VAL LEU PHE ILE SER PRO SEQRES 7 D 81 VAL PRO GLY SEQRES 1 E 81 MET ALA SER ASP ILE SER LYS CYS PHE ALA THR LEU GLY SEQRES 2 E 81 ALA THR LEU GLN ASP SER ILE GLY LYS GLN VAL LEU VAL SEQRES 3 E 81 LYS LEU ARG ASP SER HIS GLU ILE ARG GLY ILE LEU ARG SEQRES 4 E 81 SER PHE ASP GLN HIS VAL ASN LEU LEU LEU GLU ASP ALA SEQRES 5 E 81 GLU GLU ILE ILE ASP GLY ASN VAL TYR LYS ARG GLY THR SEQRES 6 E 81 MET VAL VAL ARG GLY GLU ASN VAL LEU PHE ILE SER PRO SEQRES 7 E 81 VAL PRO GLY SEQRES 1 F 81 MET ALA SER ASP ILE SER LYS CYS PHE ALA THR LEU GLY SEQRES 2 F 81 ALA THR LEU GLN ASP SER ILE GLY LYS GLN VAL LEU VAL SEQRES 3 F 81 LYS LEU ARG ASP SER HIS GLU ILE ARG GLY ILE LEU ARG SEQRES 4 F 81 SER PHE ASP GLN HIS VAL ASN LEU LEU LEU GLU ASP ALA SEQRES 5 F 81 GLU GLU ILE ILE ASP GLY ASN VAL TYR LYS ARG GLY THR SEQRES 6 F 81 MET VAL VAL ARG GLY GLU ASN VAL LEU PHE ILE SER PRO SEQRES 7 F 81 VAL PRO GLY SEQRES 1 G 81 MET ALA SER ASP ILE SER LYS CYS PHE ALA THR LEU GLY SEQRES 2 G 81 ALA THR LEU GLN ASP SER ILE GLY LYS GLN VAL LEU VAL SEQRES 3 G 81 LYS LEU ARG ASP SER HIS GLU ILE ARG GLY ILE LEU ARG SEQRES 4 G 81 SER PHE ASP GLN HIS VAL ASN LEU LEU LEU GLU ASP ALA SEQRES 5 G 81 GLU GLU ILE ILE ASP GLY ASN VAL TYR LYS ARG GLY THR SEQRES 6 G 81 MET VAL VAL ARG GLY GLU ASN VAL LEU PHE ILE SER PRO SEQRES 7 G 81 VAL PRO GLY HET GOL A1001 6 HET GOL C1005 6 HET GOL D1004 6 HET GOL G1002 6 HET GOL G1003 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 8 GOL 5(C3 H8 O3) FORMUL 13 HOH *130(H2 O) HELIX 1 1 THR A 11 ASP A 18 1 8 HELIX 2 2 LEU B 12 ILE B 20 1 9 HELIX 3 3 ALA C 14 ILE C 20 1 7 HELIX 4 4 THR D 11 ILE D 20 1 10 HELIX 5 6 LEU F 12 SER F 19 1 8 HELIX 6 7 GLY G 13 SER G 19 1 7 SHEET 1 A36 GLN A 23 LEU A 28 0 SHEET 2 A36 HIS A 32 PHE A 41 -1 O ILE A 34 N VAL A 26 SHEET 3 A36 LEU A 47 ILE A 56 -1 O GLU A 50 N ILE A 37 SHEET 4 A36 ASN A 59 VAL A 68 -1 O GLY A 64 N ALA A 52 SHEET 5 A36 VAL G 73 PRO G 78 -1 O ILE G 76 N VAL A 67 SHEET 6 A36 GLN G 23 LEU G 28 -1 N LYS G 27 O LEU G 74 SHEET 7 A36 HIS G 32 PHE G 41 -1 O GLY G 36 N VAL G 24 SHEET 8 A36 LEU G 47 ILE G 56 -1 O GLU G 53 N ARG G 35 SHEET 9 A36 ASN G 59 VAL G 68 -1 O ARG G 63 N ALA G 52 SHEET 10 A36 VAL F 73 PRO F 78 -1 N ILE F 76 O VAL G 67 SHEET 11 A36 GLN F 23 LEU F 28 -1 N LYS F 27 O LEU F 74 SHEET 12 A36 HIS F 32 PHE F 41 -1 O GLY F 36 N VAL F 24 SHEET 13 A36 LEU F 47 ILE F 56 -1 O GLU F 50 N ILE F 37 SHEET 14 A36 ASN F 59 VAL F 68 -1 O TYR F 61 N GLU F 54 SHEET 15 A36 VAL E 73 PRO E 78 -1 N ILE E 76 O VAL F 67 SHEET 16 A36 GLN E 23 LEU E 28 -1 N LEU E 25 O SER E 77 SHEET 17 A36 HIS E 32 PHE E 41 -1 O ILE E 34 N VAL E 26 SHEET 18 A36 LEU E 47 ILE E 56 -1 O GLU E 50 N ILE E 37 SHEET 19 A36 ASN E 59 VAL E 68 -1 O ARG E 63 N ALA E 52 SHEET 20 A36 VAL D 73 PRO D 78 -1 N ILE D 76 O VAL E 67 SHEET 21 A36 GLN D 23 LEU D 28 -1 N LYS D 27 O LEU D 74 SHEET 22 A36 HIS D 32 PHE D 41 -1 O ILE D 34 N VAL D 26 SHEET 23 A36 LEU D 47 ILE D 56 -1 O ILE D 55 N GLU D 33 SHEET 24 A36 ASN D 59 VAL D 68 -1 O ARG D 63 N ALA D 52 SHEET 25 A36 VAL C 73 PRO C 78 -1 N ILE C 76 O VAL D 67 SHEET 26 A36 GLN C 23 LEU C 28 -1 N LEU C 25 O SER C 77 SHEET 27 A36 HIS C 32 PHE C 41 -1 O ILE C 34 N VAL C 26 SHEET 28 A36 LEU C 47 ILE C 56 -1 O GLU C 50 N ILE C 37 SHEET 29 A36 ASN C 59 VAL C 68 -1 O GLY C 64 N ALA C 52 SHEET 30 A36 VAL B 73 PRO B 78 -1 N ILE B 76 O VAL C 67 SHEET 31 A36 GLN B 23 LEU B 28 -1 N LEU B 25 O SER B 77 SHEET 32 A36 HIS B 32 PHE B 41 -1 O ILE B 34 N VAL B 26 SHEET 33 A36 LEU B 47 ILE B 56 -1 O GLU B 50 N ILE B 37 SHEET 34 A36 ASN B 59 VAL B 68 -1 O GLY B 64 N ALA B 52 SHEET 35 A36 VAL A 73 PRO A 78 -1 N ILE A 76 O VAL B 67 SHEET 36 A36 GLN A 23 LEU A 28 -1 N LEU A 25 O SER A 77 SITE 1 AC1 4 LYS A 27 GLU A 33 TYR B 61 ARG B 63 SITE 1 AC2 4 LEU F 12 ASN G 46 ARG G 69 GLU G 71 SITE 1 AC3 5 ILE A 56 TYR A 61 ARG A 63 LYS G 27 SITE 2 AC3 5 GLU G 33 SITE 1 AC4 4 LYS D 27 GLU D 33 TYR E 61 ARG E 63 SITE 1 AC5 8 LEU C 25 ARG C 35 SER C 77 PRO C 78 SITE 2 AC5 8 VAL C 79 PRO C 80 LYS D 62 ARG D 63 CRYST1 100.261 95.738 62.157 90.00 92.69 90.00 C 1 2 1 28 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009974 0.000000 0.000468 0.00000 SCALE2 0.000000 0.010445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016106 0.00000 MASTER 403 0 5 6 36 0 7 6 0 0 0 49 END