HEADER LIGASE 27-FEB-01 1I5H TITLE SOLUTION STRUCTURE OF THE RNEDD4 WWIII DOMAIN-RENAC BP2 TITLE 2 PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN LIGASE NEDD4; COMPND 3 CHAIN: W; COMPND 4 FRAGMENT: WWIII DOMAIN; COMPND 5 SYNONYM: RNEDD4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: AMILORIDE-SENSITIVE SODIUM CHANNEL BETA-SUBUNIT; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: RENAC BP2 PEPTIDE; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T2; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 12 ORGANISM_COMMON: NORWAY RAT; SOURCE 13 ORGANISM_TAXID: 10116; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PGEX4T2; SOURCE 19 OTHER_DETAILS: AN IDENTICAL PEPTIDE WAS MADE SYNTHETICALLY SOURCE 20 USING STANDARD F-MOC CHEMISTRY FOR NMR SAMPLES REQUIRING SOURCE 21 UNLABELED BP2 PEPTIDE. KEYWDS NEDD4, WW DOMAINS, ENAC, PY MOTIF, LIDDLE SYNDROME, NMR, KEYWDS 2 PROLINE-RICH, LIGASE EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR V.KANELIS,D.ROTIN,J.D.FORMAN-KAY REVDAT 2 24-FEB-09 1I5H 1 VERSN REVDAT 1 02-MAY-01 1I5H 0 JRNL AUTH V.KANELIS,D.ROTIN,J.D.FORMAN-KAY JRNL TITL SOLUTION STRUCTURE OF A NEDD4 WW DOMAIN-ENAC JRNL TITL 2 PEPTIDE COMPLEX. JRNL REF NAT.STRUCT.BIOL. V. 8 407 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11323714 JRNL DOI 10.1038/87562 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.0 REMARK 3 AUTHORS : NILGES, M. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PRELIMINARY STRUCTURES WERE REMARK 3 CALCULATED USING CNS1.0. THESE STRUCTURES WERE THEN USED AS REMARK 3 INPUT INTO THE PROGRAM ARIA1.0 FOR NOE ASSIGNMENT AND REMARK 3 STRUCTURE REFINEMENT. THESE STRUCTURES WERE CALCULATED USING REMARK 3 1799 UNAMBIGUOUS AND 214 AMBIGUOUS NOES, 14 HYDROGEN BOND REMARK 3 RESTRAINTS, 44 DIHEDRAL ANGLE RESTRAINTS AND DIRECTLY REFINED REMARK 3 AGAINST 33 JHNHA COUPLING CONSTANTS. REMARK 4 REMARK 4 1I5H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-01. REMARK 100 THE RCSB ID CODE IS RCSB012928. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.01 REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : SAMPLE 1:1MM RNEDD4 WWIII U- REMARK 210 15N,13C; 3MM RENAC BP2 NA; 10 REMARK 210 MM NA+ PHOSPHATE, PH 6.5; REMARK 210 0.005 MM EDTA; 0.01 MM REMARK 210 APROTININ; 0.005 MM LEUPEPTIN; REMARK 210 0.005 MM AEBSF; SAMPLE 2:1MM REMARK 210 RENAC BP2 U-15N,13C; 3MM REMARK 210 RNEDD4 WWIII NA; 10 MM NA+ REMARK 210 PHOSPHATE, PH 6.5; 0.005 MM REMARK 210 EDTA; 0.01 MM APROTININ; 0.005 REMARK 210 MM LEUPEPTIN; 0.005 MM AEBSF; REMARK 210 MORE DETAILED DESCRIPTION REMARK 210 GIVEN IN BMRB 4963; 1MM RENAC REMARK 210 BP2 U-15N,13C; 3MM RNEDD4 REMARK 210 WWIII NA; 10 MM NA+ PHOSPHATE, REMARK 210 PH 6.5; 0.005 MM EDTA; 0.01 MM REMARK 210 APROTININ; 0.005 MM LEUPEPTIN; REMARK 210 0.005 MM AEBSF;; 1MM RNEDD4 REMARK 210 WWIII U-15N,13C; 3MM RENAC BP2 REMARK 210 NA; 10 MM NA+ PHOSPHATE, PH REMARK 210 6.5; 0.005 MM EDTA; 0.01 MM REMARK 210 APROTININ; 0.005 MM LEUPEPTIN; REMARK 210 0.005 MM AEBSF;; 1MM RENAC BP2 REMARK 210 U-15N,13C; 3MM RNEDD4 WWIII REMARK 210 NA; 10 MM NA+ PHOSPHATE, PH REMARK 210 6.5; 0.005 MM EDTA; 0.01 MM REMARK 210 APROTININ; 0.005 MM LEUPEPTIN; REMARK 210 0.005 MM AEBSF; REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 15N/13C-EDITED NOESY, 3D REMARK 210 13C F1-FILTERED, F3-EDITED REMARK 210 NOESY, HNCOCA_COHACA_CROSS, REMARK 210 HNCOCA_HNHA_CROSS, J-HNHA, REMARK 210 HNCO-TROSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.8, NMRVEIW 4.1.2, REMARK 210 CNS 1.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 170 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER W 451 67.79 65.87 REMARK 500 1 ASP W 454 42.92 -91.25 REMARK 500 1 LEU W 461 170.16 57.16 REMARK 500 1 LYS W 483 75.48 42.70 REMARK 500 1 VAL W 495 32.98 -159.65 REMARK 500 1 THR B 607 -71.94 69.09 REMARK 500 1 LEU B 608 107.78 -55.41 REMARK 500 1 PRO B 615 -175.41 -54.40 REMARK 500 2 PRO W 452 97.17 -51.02 REMARK 500 2 VAL W 453 66.95 -160.73 REMARK 500 2 LEU W 461 167.96 58.41 REMARK 500 2 LYS W 483 79.72 40.61 REMARK 500 2 GLU W 488 -177.68 -60.95 REMARK 500 2 ASN W 494 -72.27 -76.89 REMARK 500 2 VAL W 495 42.53 -158.75 REMARK 500 2 ILE W 497 -71.36 -157.41 REMARK 500 2 PRO B 615 175.07 -47.34 REMARK 500 3 ASP W 454 74.23 -155.66 REMARK 500 3 ASP W 457 88.12 175.17 REMARK 500 3 LEU W 461 171.55 55.86 REMARK 500 3 LYS W 483 80.60 42.77 REMARK 500 3 VAL W 495 78.12 -160.05 REMARK 500 3 ALA W 496 75.62 -168.52 REMARK 500 3 ILE W 497 52.57 -157.68 REMARK 500 3 SER B 606 -53.53 -161.59 REMARK 500 3 THR B 607 -66.45 68.09 REMARK 500 3 PRO B 615 -173.58 -52.43 REMARK 500 4 ASP W 454 132.95 -175.14 REMARK 500 4 SER W 455 -57.55 -166.18 REMARK 500 4 ASN W 456 -73.62 -155.44 REMARK 500 4 ASP W 457 91.92 50.39 REMARK 500 4 PRO W 460 71.01 -64.56 REMARK 500 4 LEU W 461 169.90 63.72 REMARK 500 4 LYS W 483 81.91 44.50 REMARK 500 4 ASN W 494 -79.52 -163.01 REMARK 500 4 VAL W 495 42.65 70.81 REMARK 500 4 ALA W 496 -160.90 38.96 REMARK 500 4 THR B 607 -68.65 76.77 REMARK 500 4 PRO B 615 -172.75 -55.33 REMARK 500 5 SER W 451 -53.72 173.80 REMARK 500 5 VAL W 453 -172.40 45.45 REMARK 500 5 SER W 455 -44.49 -166.51 REMARK 500 5 ASN W 456 142.25 65.76 REMARK 500 5 ASP W 457 74.83 -108.94 REMARK 500 5 LEU W 461 167.61 56.59 REMARK 500 5 LYS W 483 80.07 42.82 REMARK 500 5 GLU W 488 -173.66 -61.51 REMARK 500 5 GLN W 493 81.89 -63.17 REMARK 500 5 ASN W 494 -45.82 -164.77 REMARK 500 5 PRO B 614 160.24 -47.68 REMARK 500 5 PRO B 615 -177.48 -50.80 REMARK 500 6 PRO W 452 105.21 -53.54 REMARK 500 6 ASP W 454 -162.31 -122.58 REMARK 500 6 SER W 455 -71.42 80.44 REMARK 500 6 ASN W 456 175.87 54.08 REMARK 500 6 PRO W 460 69.54 -65.73 REMARK 500 6 LEU W 461 166.77 55.77 REMARK 500 6 LYS W 483 78.98 47.35 REMARK 500 6 ALA W 496 117.28 -169.05 REMARK 500 6 THR B 607 -66.10 -90.98 REMARK 500 6 PRO B 615 -173.13 -51.18 REMARK 500 7 ASP W 454 95.85 69.19 REMARK 500 7 SER W 455 -159.04 -166.16 REMARK 500 7 ASN W 456 97.80 -171.28 REMARK 500 7 LEU W 461 178.31 61.31 REMARK 500 7 LYS W 483 81.29 41.51 REMARK 500 7 ASN W 494 -78.08 -76.86 REMARK 500 7 ALA W 496 173.27 82.13 REMARK 500 7 ILE W 497 -68.43 67.01 REMARK 500 7 LEU B 608 76.77 -107.13 REMARK 500 7 PRO B 615 -174.38 -52.53 REMARK 500 8 SER W 451 83.93 -168.96 REMARK 500 8 VAL W 453 -51.97 -158.53 REMARK 500 8 ASP W 454 67.69 -174.25 REMARK 500 8 ASN W 456 96.31 58.51 REMARK 500 8 PRO W 460 76.50 -65.60 REMARK 500 8 LEU W 461 158.80 57.24 REMARK 500 8 LYS W 483 78.71 41.91 REMARK 500 8 GLU W 488 -179.10 -62.16 REMARK 500 8 ASN W 494 -63.09 -163.89 REMARK 500 8 VAL W 495 38.45 -159.95 REMARK 500 8 ALA W 496 87.70 37.62 REMARK 500 8 ILE W 497 58.18 -158.56 REMARK 500 8 SER B 606 -80.66 62.33 REMARK 500 8 PRO B 614 174.35 -48.08 REMARK 500 8 PRO B 615 -176.92 -51.81 REMARK 500 9 SER W 451 174.83 56.03 REMARK 500 9 VAL W 453 -43.28 -159.70 REMARK 500 9 ASP W 454 -45.52 -132.50 REMARK 500 9 SER W 455 -65.32 80.84 REMARK 500 9 ASN W 456 107.86 65.40 REMARK 500 9 PRO W 460 61.77 -65.81 REMARK 500 9 LEU W 461 169.56 59.77 REMARK 500 9 LYS W 483 81.49 40.37 REMARK 500 9 ALA W 496 -65.25 82.51 REMARK 500 9 SER B 606 -72.86 -159.96 REMARK 500 9 THR B 607 -40.06 -133.77 REMARK 500 9 LEU B 608 71.09 -110.75 REMARK 500 9 PRO B 614 162.30 -43.73 REMARK 500 9 PRO B 615 -176.61 -53.07 REMARK 500 10 PRO W 452 65.23 -68.44 REMARK 500 10 LEU W 461 167.01 56.24 REMARK 500 10 LYS W 483 79.43 41.43 REMARK 500 10 ASN W 494 -78.07 66.06 REMARK 500 10 VAL W 495 85.55 58.18 REMARK 500 10 SER B 606 -65.36 71.30 REMARK 500 10 LEU B 608 67.37 -116.92 REMARK 500 10 ILE B 610 88.84 -151.00 REMARK 500 10 PRO B 615 175.45 -52.21 REMARK 500 11 VAL W 453 -55.53 -157.89 REMARK 500 11 ASP W 457 114.05 -174.79 REMARK 500 11 LEU W 461 168.77 55.34 REMARK 500 11 LYS W 483 85.93 43.58 REMARK 500 11 ASN W 494 90.69 -165.25 REMARK 500 11 VAL W 495 87.60 -157.18 REMARK 500 11 ILE W 497 -43.40 -158.56 REMARK 500 11 THR B 607 -73.68 -74.25 REMARK 500 11 LEU B 608 60.65 64.41 REMARK 500 11 PRO B 614 171.94 -51.56 REMARK 500 11 PRO B 615 -173.29 -52.62 REMARK 500 12 SER W 451 94.14 -169.76 REMARK 500 12 SER W 455 31.31 -165.79 REMARK 500 12 ASN W 456 170.40 54.54 REMARK 500 12 LEU W 461 170.31 60.74 REMARK 500 12 LYS W 483 78.78 42.85 REMARK 500 12 ALA W 496 -43.15 -169.92 REMARK 500 12 LEU B 608 100.16 -41.00 REMARK 500 12 PRO B 615 177.59 -55.41 REMARK 500 13 SER W 451 69.44 -178.76 REMARK 500 13 SER W 455 -159.16 41.25 REMARK 500 13 PRO W 460 63.22 -66.93 REMARK 500 13 LEU W 461 170.27 58.86 REMARK 500 13 LYS W 483 80.21 43.76 REMARK 500 13 GLN W 493 57.33 -99.81 REMARK 500 13 VAL W 495 84.65 51.51 REMARK 500 13 ALA W 496 119.40 -168.95 REMARK 500 13 THR B 607 -45.72 -130.57 REMARK 500 13 LEU B 608 108.79 -57.67 REMARK 500 13 PRO B 614 -176.87 -50.29 REMARK 500 13 PRO B 615 -173.67 -53.68 REMARK 500 14 VAL W 453 31.67 73.52 REMARK 500 14 ASP W 454 33.57 -167.79 REMARK 500 14 SER W 455 -158.60 -74.57 REMARK 500 14 ASN W 456 94.39 -50.90 REMARK 500 14 LEU W 461 166.29 56.97 REMARK 500 14 LYS W 483 80.62 44.13 REMARK 500 14 SER B 606 -48.51 -146.65 REMARK 500 14 LEU B 608 74.57 -112.99 REMARK 500 14 PRO B 614 179.55 -57.26 REMARK 500 14 PRO B 615 -172.95 -53.67 REMARK 500 15 VAL W 453 27.76 -160.53 REMARK 500 15 SER W 455 -158.29 -166.23 REMARK 500 15 PRO W 460 63.05 -65.68 REMARK 500 15 LEU W 461 165.14 59.72 REMARK 500 15 LYS W 483 79.96 43.95 REMARK 500 15 ASN W 494 -45.79 -163.33 REMARK 500 15 ALA W 496 95.66 38.60 REMARK 500 15 LEU B 608 64.11 -117.11 REMARK 500 15 PRO B 615 -174.89 -51.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4963 RELATED DB: BMRB REMARK 900 4963 IS CHEMICAL SHIFTS FOR THE WW DOMAIN AND THE BP2 REMARK 900 PEPTIDE. COUPLING CONSTANTS FOR THE WW DOMAIN (J-HNHA AND REMARK 900 LONG RANGE J-CC) AND THE BP2 PEPTIDE (J-HNHA AND J-HAHB) REMARK 900 ARE PROVIDED AS WELL. DBREF 1I5H W 452 499 UNP Q62940 NEDD4_RAT 452 499 DBREF 1I5H B 607 621 UNP P37090 SCNNB_RAT 607 621 SEQADV 1I5H GLY W 450 UNP Q62940 SEE REMARK 999 SEQADV 1I5H SER W 451 UNP Q62940 SEE REMARK 999 SEQADV 1I5H GLY B 605 UNP P37090 SEE REMARK 999 SEQADV 1I5H SER B 606 UNP P37090 SEE REMARK 999 SEQRES 1 W 50 GLY SER PRO VAL ASP SER ASN ASP LEU GLY PRO LEU PRO SEQRES 2 W 50 PRO GLY TRP GLU GLU ARG THR HIS THR ASP GLY ARG VAL SEQRES 3 W 50 PHE PHE ILE ASN HIS ASN ILE LYS LYS THR GLN TRP GLU SEQRES 4 W 50 ASP PRO ARG MET GLN ASN VAL ALA ILE THR GLY SEQRES 1 B 17 GLY SER THR LEU PRO ILE PRO GLY THR PRO PRO PRO ASN SEQRES 2 B 17 TYR ASP SER LEU SHEET 1 A 3 TRP W 465 THR W 469 0 SHEET 2 A 3 VAL W 475 ASN W 479 -1 N PHE W 476 O ARG W 468 SHEET 3 A 3 LYS W 484 GLN W 486 -1 O LYS W 484 N ASN W 479 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 267 0 0 0 3 0 0 6 0 0 0 6 END