HEADER APOPTOSIS 15-FEB-01 1I3P TITLE THE 3.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF A MUTATED BACULOVIRUS TITLE 2 P35 AFTER CASPASE CLEAVAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EARLY 35 KDA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: APOPTOSIS PREVENTING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AUTOGRAPHA CALIFORNICA NUCLEOPOLYHEDROVIRUS; SOURCE 3 ORGANISM_TAXID: 46015; SOURCE 4 GENE: P35; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B+ KEYWDS HELIX-TURN-HELIX, REACTIVE SITE LOOP, HAIRPIN LOOP, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR W.P.DELA CRUZ,D.LEMONGELLO,P.D.FRIESEN,A.J.FISHER REVDAT 5 27-OCT-21 1I3P 1 SEQADV SHEET REVDAT 4 31-JAN-18 1I3P 1 REMARK REVDAT 3 04-OCT-17 1I3P 1 REMARK REVDAT 2 24-FEB-09 1I3P 1 VERSN REVDAT 1 24-OCT-01 1I3P 0 JRNL AUTH W.P.DELA CRUZ,P.D.FRIESEN,A.J.FISHER JRNL TITL CRYSTAL STRUCTURE OF BACULOVIRUS P35 REVEALS A NOVEL JRNL TITL 2 CONFORMATIONAL CHANGE IN THE REACTIVE SITE LOOP AFTER JRNL TITL 3 CASPASE CLEAVAGE. JRNL REF J.BIOL.CHEM. V. 276 32933 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11402050 JRNL DOI 10.1074/JBC.M103930200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.J.FISHER,W.P.DELA CRUZ,S.J.ZOOG,C.L.SCHNEIDER,P.D.FRIESEN REMARK 1 TITL CRYSTAL STRUCTURE OF BACULOVIRUS P35: ROLE OF A NOVEL REMARK 1 TITL 2 REACTIVE SITE LOOP IN APOPTOTIC INHIBITION REMARK 1 REF EMBO J. V. 18 2031 1999 REMARK 1 REFN ISSN 0261-4189 REMARK 1 DOI 10.1093/EMBOJ/18.8.2031 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 934677.250 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 7530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 346 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.016 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1191 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 62 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.049 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2077 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 15.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.55 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.36 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 2.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.480 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.24 REMARK 3 BSOL : 49.08 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1I3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-01. REMARK 100 THE DEPOSITION ID IS D_1000012864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-99 REMARK 200 TEMPERATURE (KELVIN) : 170 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NI MIRROR + NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7577 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 10.63 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 470.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.39500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1P35 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9-13% PEG 20,000, 100-400 MM NACL, 100 REMARK 280 MM MES, PH 6.0, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.46200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.23100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.23100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 80.46200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 2 REMARK 465 VAL A 3 REMARK 465 ILE A 4 REMARK 465 PHE A 5 REMARK 465 SER A 83 REMARK 465 ASP A 84 REMARK 465 GLN A 85 REMARK 465 MET A 86 REMARK 465 ASP A 87 REMARK 465 GLY A 88 REMARK 465 PHE A 89 REMARK 465 HIS A 90 REMARK 465 SER A 236 REMARK 465 LYS A 237 REMARK 465 ASN A 238 REMARK 465 GLU A 251 REMARK 465 SER A 252 REMARK 465 SER A 253 REMARK 465 TRP A 254 REMARK 465 GLY A 255 REMARK 465 LYS A 256 REMARK 465 SER A 257 REMARK 465 GLU A 258 REMARK 465 LYS A 299 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 6 CG CD REMARK 470 VAL A 7 CG1 CG2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 ILE A 9 CG1 CG2 CD1 REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 ASN A 36 CG OD1 ND2 REMARK 470 THR A 37 OG1 CG2 REMARK 470 GLN A 38 CG CD OE1 NE2 REMARK 470 LEU A 39 CG CD1 CD2 REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 66 CG CD NE CZ NH1 NH2 REMARK 470 SER A 69 OG REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 ASP A 91 CG OD1 OD2 REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 ASP A 98 CG OD1 OD2 REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 470 HIS A 100 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 ASP A 123 CG OD1 OD2 REMARK 470 THR A 125 OG1 CG2 REMARK 470 ASP A 126 CG OD1 OD2 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 SER A 129 OG REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 TYR A 136 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 143 CG OD1 OD2 REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 146 CG OD1 ND2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 ASN A 164 CG OD1 ND2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 THR A 250 OG1 CG2 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 TYR A 260 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 LYS A 276 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 232 OE2 GLU A 247 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 156 CE LYS A 156 NZ 0.164 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 40 N - CA - C ANGL. DEV. = -23.8 DEGREES REMARK 500 PRO A 71 C - N - CA ANGL. DEV. = -10.0 DEGREES REMARK 500 PRO A 157 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 PRO A 181 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 7 123.80 -37.56 REMARK 500 GLN A 13 -116.60 -93.36 REMARK 500 THR A 14 114.20 -162.57 REMARK 500 ASP A 22 -165.25 -106.59 REMARK 500 LYS A 33 -36.17 -31.08 REMARK 500 GLN A 38 -110.54 -87.14 REMARK 500 LYS A 41 -174.50 -37.19 REMARK 500 PRO A 42 134.47 -36.45 REMARK 500 THR A 57 -163.04 -75.39 REMARK 500 ARG A 58 70.88 -163.34 REMARK 500 LYS A 59 -176.24 -53.85 REMARK 500 ASN A 61 13.27 -53.49 REMARK 500 ARG A 64 -77.99 -54.13 REMARK 500 GLU A 79 -169.95 -64.21 REMARK 500 LYS A 80 72.53 -172.85 REMARK 500 PHE A 115 -43.95 -26.84 REMARK 500 TYR A 124 -75.01 -84.65 REMARK 500 ASP A 126 -124.54 -88.10 REMARK 500 LYS A 127 -76.27 -165.11 REMARK 500 GLU A 144 -72.94 -93.36 REMARK 500 ARG A 145 -49.05 -23.56 REMARK 500 PRO A 157 -71.34 -23.47 REMARK 500 PRO A 181 65.69 -56.37 REMARK 500 ALA A 183 128.98 -32.47 REMARK 500 SER A 202 36.66 70.58 REMARK 500 LEU A 219 176.18 -59.52 REMARK 500 ASN A 225 -48.85 -22.85 REMARK 500 LYS A 263 66.56 -155.64 REMARK 500 PHE A 265 24.70 39.35 REMARK 500 LYS A 274 -88.99 -76.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 95 0.08 SIDE CHAIN REMARK 500 TYR A 192 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P35 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P35 WILD TYPE DBREF 1I3P A 2 299 UNP P08160 VP35_NPVAC 2 299 SEQADV 1I3P PRO A 71 UNP P08160 VAL 71 ENGINEERED MUTATION SEQRES 1 A 298 CYS VAL ILE PHE PRO VAL GLU ILE ASP VAL SER GLN THR SEQRES 2 A 298 ILE ILE ARG ASP CYS GLN VAL ASP LYS GLN THR ARG GLU SEQRES 3 A 298 LEU VAL TYR ILE ASN LYS ILE MET ASN THR GLN LEU THR SEQRES 4 A 298 LYS PRO VAL LEU MET MET PHE ASN ILE SER GLY PRO ILE SEQRES 5 A 298 ARG SER VAL THR ARG LYS ASN ASN ASN LEU ARG ASP ARG SEQRES 6 A 298 ILE LYS SER LYS PRO ASP GLU GLN PHE ASP GLN LEU GLU SEQRES 7 A 298 LYS ASP TYR SER ASP GLN MET ASP GLY PHE HIS ASP SER SEQRES 8 A 298 ILE LYS TYR PHE LYS ASP GLU HIS TYR SER VAL SER CYS SEQRES 9 A 298 GLN ASN GLY SER VAL LEU LYS SER LYS PHE ALA LYS ILE SEQRES 10 A 298 LEU LYS SER HIS ASP TYR THR ASP LYS LYS SER ILE GLU SEQRES 11 A 298 ALA TYR GLU LYS TYR CYS LEU PRO LYS LEU VAL ASP GLU SEQRES 12 A 298 ARG ASN ASP TYR TYR VAL ALA VAL CYS VAL LEU LYS PRO SEQRES 13 A 298 GLY PHE GLU ASN GLY SER ASN GLN VAL LEU SER PHE GLU SEQRES 14 A 298 TYR ASN PRO ILE GLY ASN LYS VAL ILE VAL PRO PHE ALA SEQRES 15 A 298 HIS GLU ILE ASN ASP THR GLY LEU TYR GLU TYR ASP VAL SEQRES 16 A 298 VAL ALA TYR VAL ASP SER VAL GLN PHE ASP GLY GLU GLN SEQRES 17 A 298 PHE GLU GLU PHE VAL GLN SER LEU ILE LEU PRO SER SER SEQRES 18 A 298 PHE LYS ASN SER GLU LYS VAL LEU TYR TYR ASN GLU ALA SEQRES 19 A 298 SER LYS ASN LYS SER MET ILE TYR LYS ALA LEU GLU PHE SEQRES 20 A 298 THR THR GLU SER SER TRP GLY LYS SER GLU LYS TYR ASN SEQRES 21 A 298 TRP LYS ILE PHE CYS ASN GLY PHE ILE TYR ASP LYS LYS SEQRES 22 A 298 SER LYS VAL LEU TYR VAL LYS LEU HIS ASN VAL THR SER SEQRES 23 A 298 ALA LEU ASN LYS ASN VAL ILE LEU ASN THR ILE LYS HELIX 1 2 ASN A 62 GLN A 77 1 16 HELIX 2 3 GLY A 108 PHE A 115 1 8 HELIX 3 4 LYS A 114 HIS A 122 1 9 HELIX 4 6 LEU A 138 VAL A 142 5 5 HELIX 5 7 PRO A 157 ASN A 161 5 5 HELIX 6 8 ASP A 206 SER A 216 1 11 SHEET 1 A 9 ILE A 53 THR A 57 0 SHEET 2 A 9 LEU A 167 TYR A 171 -1 O SER A 168 N THR A 57 SHEET 3 A 9 ARG A 26 ASN A 32 -1 N ARG A 26 O TYR A 171 SHEET 4 A 9 THR A 14 GLN A 20 -1 O ILE A 15 N ILE A 31 SHEET 5 A 9 TYR A 192 ASP A 201 1 O VAL A 197 N ILE A 16 SHEET 6 A 9 VAL A 277 SER A 287 -1 O LEU A 278 N VAL A 200 SHEET 7 A 9 ASN A 261 TYR A 271 -1 O GLY A 268 N LYS A 281 SHEET 8 A 9 SER A 240 THR A 249 -1 O SER A 240 N TYR A 271 SHEET 9 A 9 LYS A 228 ASN A 233 -1 N LYS A 228 O GLU A 247 SHEET 1 B 3 MET A 45 ILE A 49 0 SHEET 2 B 3 TYR A 149 LEU A 155 -1 O TYR A 149 N ILE A 49 SHEET 3 B 3 TYR A 101 ASN A 107 -1 O SER A 102 N VAL A 154 SHEET 1 C 2 LYS A 177 VAL A 180 0 SHEET 2 C 2 VAL A 293 ASN A 296 -1 O VAL A 293 N VAL A 180 CRYST1 75.806 75.806 120.693 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013192 0.007616 0.000000 0.00000 SCALE2 0.000000 0.015232 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008285 0.00000 MASTER 428 0 0 6 14 0 0 6 0 0 0 23 END