HEADER HYDROLASE 18-JAN-01 1HY7 TITLE A CARBOXYLIC ACID BASED INHIBITOR IN COMPLEX WITH MMP3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: STROMELYSIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 100-272; COMPND 5 SYNONYM: MMP-3; COMPND 6 EC: 3.4.24.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: FIBROBLAST; SOURCE 6 GENE: MMP3; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MIXED ALPHA BETA STRUCTURE, ZINC PROTEASE, INHIBITED, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.G.NATCHUS,R.G.BOOKLAND,M.J.LAUFERSWEILER,S.PIKUL,N.G.ALMSTEAD,B.DE, AUTHOR 2 M.J.JANUSZ,L.C.HSIEH,F.GU,M.E.POKROSS,V.S.PATEL,S.M.GARVER,S.X.PENG, AUTHOR 3 T.M.BRANCH,S.L.KING,T.R.BAKER,D.J.FOLTZ,G.E.MIELING REVDAT 6 07-FEB-18 1HY7 1 REMARK REVDAT 5 04-OCT-17 1HY7 1 REMARK REVDAT 4 13-JUL-11 1HY7 1 VERSN REVDAT 3 24-FEB-09 1HY7 1 VERSN REVDAT 2 24-JUL-02 1HY7 1 JRNL REVDAT 1 18-JAN-02 1HY7 0 JRNL AUTH M.G.NATCHUS,R.G.BOOKLAND,M.J.LAUFERSWEILER,S.PIKUL, JRNL AUTH 2 N.G.ALMSTEAD,B.DE,M.J.JANUSZ,L.C.HSIEH,F.GU,M.E.POKROSS, JRNL AUTH 3 V.S.PATEL,S.M.GARVER,S.X.PENG,T.M.BRANCH,S.L.KING,T.R.BAKER, JRNL AUTH 4 D.J.FOLTZ,G.E.MIELING JRNL TITL DEVELOPMENT OF NEW CARBOXYLIC ACID-BASED MMP INHIBITORS JRNL TITL 2 DERIVED FROM FUNCTIONALIZED PROPARGYLGLYCINES. JRNL REF J.MED.CHEM. V. 44 1060 2001 JRNL REFN ISSN 0022-2623 JRNL PMID 11297453 JRNL DOI 10.1021/JM000477L REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 46098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2529 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2647 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 336 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 1.00000 REMARK 3 B13 (A**2) : -0.50000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.016 ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.038 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.796 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED MAXIMUM LIKELYHOOD PROCEDURES REMARK 4 REMARK 4 1HY7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-01. REMARK 100 THE DEPOSITION ID IS D_1000012680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47986 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 17.398 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: FFT, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, SODIUM CHLORIDE, MAGNESIUM REMARK 280 CHLORIDE, TRIS, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.95900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.90050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.02950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.90050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.95900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.02950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER CONSTRUCTED FROM CHAIN REMARK 300 A OR CHAIN B REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -135.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -18.95900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 78.05900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -52.90050 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 223 REMARK 465 HIS A 224 REMARK 465 SER A 225 REMARK 465 LEU A 226 REMARK 465 THR A 227 REMARK 465 ASP A 228 REMARK 465 ASP A 251 REMARK 465 SER A 252 REMARK 465 PRO A 253 REMARK 465 GLU A 254 REMARK 465 THR A 255 REMARK 465 HIS B 724 REMARK 465 SER B 725 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 84 O GLN B 743 2464 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 130 CB - CG - CD1 ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG B 600 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP B 641 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP B 751 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 149 -128.77 43.62 REMARK 500 HIS A 151 24.25 -143.40 REMARK 500 ASN A 162 -113.47 65.28 REMARK 500 ASP A 189 -157.99 -114.40 REMARK 500 ILE B 589 63.43 39.00 REMARK 500 ARG B 649 -129.18 46.63 REMARK 500 HIS B 651 23.14 -143.56 REMARK 500 ASP B 653 -169.80 -129.29 REMARK 500 ASN B 662 -124.05 53.89 REMARK 500 ASP B 689 -154.14 -119.87 REMARK 500 PHE B 710 -163.30 -106.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 201 NE2 REMARK 620 2 HIS A 211 NE2 114.6 REMARK 620 3 HIS A 205 NE2 101.7 101.5 REMARK 620 4 THR B 755 OXT 132.3 104.3 96.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 166 NE2 REMARK 620 2 HIS A 179 ND1 111.1 REMARK 620 3 HIS A 151 NE2 115.7 107.4 REMARK 620 4 ASP A 153 OD2 113.3 98.4 109.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 161 O REMARK 620 2 ASP A 158 OD1 88.3 REMARK 620 3 GLY A 159 O 88.8 88.7 REMARK 620 4 VAL A 163 O 87.4 89.4 175.8 REMARK 620 5 GLU A 184 OE2 90.0 176.9 93.9 87.9 REMARK 620 6 ASP A 181 OD2 178.0 91.5 89.2 94.6 90.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 184 O REMARK 620 2 ASP A 107 OD1 122.1 REMARK 620 3 ASP A 107 OD2 76.1 50.9 REMARK 620 4 ASP A 182 OD1 106.3 91.6 84.4 REMARK 620 5 HOH A 341 O 82.1 85.2 99.6 171.4 REMARK 620 6 ASP A 182 O 81.6 156.3 148.2 80.4 99.4 REMARK 620 7 HOH A 326 O 151.9 80.2 130.2 88.5 83.1 77.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 173 O REMARK 620 2 HOH A 307 O 80.6 REMARK 620 3 HOH A 306 O 91.7 85.5 REMARK 620 4 ASP A 177 OD1 97.3 100.5 169.8 REMARK 620 5 ASP A 141 O 173.1 92.7 86.4 85.2 REMARK 620 6 ASN A 175 O 85.1 160.3 81.6 94.6 101.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MBS B 901 O2 REMARK 620 2 HIS B 711 NE2 92.4 REMARK 620 3 HIS B 705 NE2 134.5 114.8 REMARK 620 4 HIS B 701 NE2 111.6 121.0 85.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 666 NE2 REMARK 620 2 HIS B 679 ND1 112.5 REMARK 620 3 ASP B 653 OD2 112.5 97.2 REMARK 620 4 HIS B 651 NE2 117.1 107.5 108.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 803 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 684 OE2 REMARK 620 2 ASP B 658 OD1 178.7 REMARK 620 3 GLY B 661 O 89.1 92.1 REMARK 620 4 VAL B 663 O 87.4 92.1 92.3 REMARK 620 5 ASP B 681 OD2 89.5 89.4 176.3 91.0 REMARK 620 6 GLY B 659 O 93.9 86.7 85.4 177.4 91.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 804 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 682 O REMARK 620 2 HOH B 52 O 79.2 REMARK 620 3 ASP B 607 OD2 148.1 129.3 REMARK 620 4 GLU B 684 O 80.4 151.2 76.8 REMARK 620 5 HOH B 20 O 98.5 82.5 99.5 80.7 REMARK 620 6 ASP B 607 OD1 157.7 78.9 51.7 121.6 82.4 REMARK 620 7 ASP B 682 OD1 79.9 90.5 85.1 105.7 172.9 96.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 805 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 641 O REMARK 620 2 ASN B 675 O 101.8 REMARK 620 3 HOH B 12 O 84.8 83.6 REMARK 620 4 ASP B 677 OD1 86.5 93.8 170.2 REMARK 620 5 HOH B 64 O 89.8 163.3 85.6 98.9 REMARK 620 6 GLY B 673 O 171.0 85.8 91.5 97.7 81.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MBS B 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G49 RELATED DB: PDB REMARK 900 A CARBOXYLIC ACID BASED INHIBITOR IN COMPLEX WITH MMP3 REMARK 900 RELATED ID: 1CQR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE STROMELYSIN CATALYTIC DOMAIN AT 2.0 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1D5J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MMP3 COMPLEXED WITH A THIAZEPINE BASED REMARK 900 INHIBITOR REMARK 900 RELATED ID: 1D7X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MMP3 COMPLEXED WITH A MODIFIED PROLINE REMARK 900 SCAFFOLD BASED INHIBITOR REMARK 900 RELATED ID: 1D8F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MMP3 COMPLEXED WITH A PIPERAZINE BASED REMARK 900 INHIBITOR REMARK 900 RELATED ID: 1D8M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MMP3 COMPLEXED WITH A HETEROCYCLE- BASED REMARK 900 INHIBITOR DBREF 1HY7 A 83 255 UNP P08254 MMP3_HUMAN 100 272 DBREF 1HY7 B 583 755 UNP P08254 MMP3_HUMAN 100 272 SEQRES 1 A 173 PHE ARG THR PHE PRO GLY ILE PRO LYS TRP ARG LYS THR SEQRES 2 A 173 HIS LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP LEU SEQRES 3 A 173 PRO LYS ASP ALA VAL ASP SER ALA VAL GLU LYS ALA LEU SEQRES 4 A 173 LYS VAL TRP GLU GLU VAL THR PRO LEU THR PHE SER ARG SEQRES 5 A 173 LEU TYR GLU GLY GLU ALA ASP ILE MET ILE SER PHE ALA SEQRES 6 A 173 VAL ARG GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 A 173 GLY ASN VAL LEU ALA HIS ALA TYR ALA PRO GLY PRO GLY SEQRES 8 A 173 ILE ASN GLY ASP ALA HIS PHE ASP ASP ASP GLU GLN TRP SEQRES 9 A 173 THR LYS ASP THR THR GLY THR ASN LEU PHE LEU VAL ALA SEQRES 10 A 173 ALA HIS GLU ILE GLY HIS SER LEU GLY LEU PHE HIS SER SEQRES 11 A 173 ALA ASN THR GLU ALA LEU MET TYR PRO LEU TYR HIS SER SEQRES 12 A 173 LEU THR ASP LEU THR ARG PHE ARG LEU SER GLN ASP ASP SEQRES 13 A 173 ILE ASN GLY ILE GLN SER LEU TYR GLY PRO PRO PRO ASP SEQRES 14 A 173 SER PRO GLU THR SEQRES 1 B 173 PHE ARG THR PHE PRO GLY ILE PRO LYS TRP ARG LYS THR SEQRES 2 B 173 HIS LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP LEU SEQRES 3 B 173 PRO LYS ASP ALA VAL ASP SER ALA VAL GLU LYS ALA LEU SEQRES 4 B 173 LYS VAL TRP GLU GLU VAL THR PRO LEU THR PHE SER ARG SEQRES 5 B 173 LEU TYR GLU GLY GLU ALA ASP ILE MET ILE SER PHE ALA SEQRES 6 B 173 VAL ARG GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 B 173 GLY ASN VAL LEU ALA HIS ALA TYR ALA PRO GLY PRO GLY SEQRES 8 B 173 ILE ASN GLY ASP ALA HIS PHE ASP ASP ASP GLU GLN TRP SEQRES 9 B 173 THR LYS ASP THR THR GLY THR ASN LEU PHE LEU VAL ALA SEQRES 10 B 173 ALA HIS GLU ILE GLY HIS SER LEU GLY LEU PHE HIS SER SEQRES 11 B 173 ALA ASN THR GLU ALA LEU MET TYR PRO LEU TYR HIS SER SEQRES 12 B 173 LEU THR ASP LEU THR ARG PHE ARG LEU SER GLN ASP ASP SEQRES 13 B 173 ILE ASN GLY ILE GLN SER LEU TYR GLY PRO PRO PRO ASP SEQRES 14 B 173 SER PRO GLU THR HET ZN A 301 1 HET ZN A 302 1 HET CA A 303 1 HET CA A 304 1 HET CA A 305 1 HET ZN B 801 1 HET ZN B 802 1 HET CA B 803 1 HET CA B 804 1 HET CA B 805 1 HET MBS B 901 28 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM MBS R-2-{[4'-METHOXY-(1,1'-BIPHENYL)-4-YL]-SULFONYL}-AMINO- HETNAM 2 MBS 6-METHOXY-HEX-4-YNOIC ACID FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CA 6(CA 2+) FORMUL 13 MBS C20 H21 N O6 S FORMUL 14 HOH *336(H2 O) HELIX 1 1 PRO A 109 GLU A 126 1 18 HELIX 2 2 LEU A 195 LEU A 207 1 13 HELIX 3 3 SER A 235 GLY A 247 1 13 HELIX 4 4 PRO B 609 GLU B 626 1 18 HELIX 5 5 LEU B 695 LEU B 707 1 13 HELIX 6 6 ASP B 728 PHE B 732 5 5 HELIX 7 7 SER B 735 GLY B 747 1 13 SHEET 1 A 5 THR A 131 ARG A 134 0 SHEET 2 A 5 HIS A 96 ILE A 101 1 N LEU A 97 O THR A 131 SHEET 3 A 5 ILE A 142 ALA A 147 1 N ILE A 142 O THR A 98 SHEET 4 A 5 ALA A 178 ASP A 181 1 N ALA A 178 O MET A 143 SHEET 5 A 5 ALA A 165 ALA A 167 -1 O HIS A 166 N HIS A 179 SHEET 1 B 2 TRP A 186 THR A 187 0 SHEET 2 B 2 THR A 193 ASN A 194 1 O THR A 193 N THR A 187 SHEET 1 C 5 THR B 631 ARG B 634 0 SHEET 2 C 5 HIS B 596 ILE B 601 1 N LEU B 597 O THR B 631 SHEET 3 C 5 ILE B 642 ALA B 647 1 N ILE B 642 O THR B 598 SHEET 4 C 5 ALA B 678 ASP B 681 1 N ALA B 678 O MET B 643 SHEET 5 C 5 ALA B 665 ALA B 667 -1 O HIS B 666 N HIS B 679 SHEET 1 D 2 TRP B 686 THR B 687 0 SHEET 2 D 2 THR B 693 ASN B 694 1 O THR B 693 N THR B 687 LINK ZN ZN A 301 NE2 HIS A 201 1555 1555 2.02 LINK ZN ZN A 301 NE2 HIS A 211 1555 1555 2.07 LINK ZN ZN A 301 NE2 HIS A 205 1555 1555 2.11 LINK ZN ZN A 302 NE2 HIS A 166 1555 1555 1.99 LINK ZN ZN A 302 ND1 HIS A 179 1555 1555 2.05 LINK ZN ZN A 302 NE2 HIS A 151 1555 1555 2.07 LINK ZN ZN A 302 OD2 ASP A 153 1555 1555 1.99 LINK CA CA A 303 O GLY A 161 1555 1555 2.42 LINK CA CA A 303 OD1 ASP A 158 1555 1555 2.36 LINK CA CA A 303 O GLY A 159 1555 1555 2.28 LINK CA CA A 303 O VAL A 163 1555 1555 2.27 LINK CA CA A 303 OE2 GLU A 184 1555 1555 2.28 LINK CA CA A 303 OD2 ASP A 181 1555 1555 2.30 LINK CA CA A 304 O GLU A 184 1555 1555 2.40 LINK CA CA A 304 OD1 ASP A 107 1555 1555 2.57 LINK CA CA A 304 OD2 ASP A 107 1555 1555 2.45 LINK CA CA A 304 OD1 ASP A 182 1555 1555 2.42 LINK CA CA A 304 O HOH A 341 1555 1555 2.37 LINK CA CA A 304 O ASP A 182 1555 1555 2.39 LINK CA CA A 304 O HOH A 326 1555 1555 2.37 LINK CA CA A 305 O GLY A 173 1555 1555 2.28 LINK CA CA A 305 O HOH A 307 1555 1555 2.31 LINK CA CA A 305 O HOH A 306 1555 1555 2.32 LINK CA CA A 305 OD1 ASP A 177 1555 1555 2.37 LINK CA CA A 305 O ASP A 141 1555 1555 2.33 LINK CA CA A 305 O ASN A 175 1555 1555 2.33 LINK ZN ZN B 801 O2 MBS B 901 1555 1555 1.93 LINK ZN ZN B 801 NE2 HIS B 711 1555 1555 2.09 LINK ZN ZN B 801 NE2 HIS B 705 1555 1555 2.17 LINK ZN ZN B 801 NE2 HIS B 701 1555 1555 2.09 LINK ZN ZN B 802 NE2 HIS B 666 1555 1555 2.01 LINK ZN ZN B 802 ND1 HIS B 679 1555 1555 2.06 LINK ZN ZN B 802 OD2 ASP B 653 1555 1555 2.04 LINK ZN ZN B 802 NE2 HIS B 651 1555 1555 2.03 LINK CA CA B 803 OE2 GLU B 684 1555 1555 2.21 LINK CA CA B 803 OD1 ASP B 658 1555 1555 2.32 LINK CA CA B 803 O GLY B 661 1555 1555 2.34 LINK CA CA B 803 O VAL B 663 1555 1555 2.30 LINK CA CA B 803 OD2 ASP B 681 1555 1555 2.32 LINK CA CA B 803 O GLY B 659 1555 1555 2.32 LINK CA CA B 804 O ASP B 682 1555 1555 2.38 LINK CA CA B 804 O HOH B 52 1555 1555 2.38 LINK CA CA B 804 OD2 ASP B 607 1555 1555 2.45 LINK CA CA B 804 O GLU B 684 1555 1555 2.47 LINK CA CA B 804 O HOH B 20 1555 1555 2.34 LINK CA CA B 804 OD1 ASP B 607 1555 1555 2.58 LINK CA CA B 804 OD1 ASP B 682 1555 1555 2.39 LINK CA CA B 805 O ASP B 641 1555 1555 2.29 LINK CA CA B 805 O ASN B 675 1555 1555 2.31 LINK CA CA B 805 O HOH B 12 1555 1555 2.36 LINK CA CA B 805 OD1 ASP B 677 1555 1555 2.35 LINK CA CA B 805 O HOH B 64 1555 1555 2.36 LINK CA CA B 805 O GLY B 673 1555 1555 2.24 LINK ZN ZN A 301 OXT THR B 755 1555 2464 1.95 SITE 1 AC1 5 HIS A 201 HIS A 205 HIS A 211 HOH A 379 SITE 2 AC1 5 THR B 755 SITE 1 AC2 4 HIS A 151 ASP A 153 HIS A 166 HIS A 179 SITE 1 AC3 6 ASP A 158 GLY A 159 GLY A 161 VAL A 163 SITE 2 AC3 6 ASP A 181 GLU A 184 SITE 1 AC4 5 ASP A 107 ASP A 182 GLU A 184 HOH A 326 SITE 2 AC4 5 HOH A 341 SITE 1 AC5 6 ASP A 141 GLY A 173 ASN A 175 ASP A 177 SITE 2 AC5 6 HOH A 306 HOH A 307 SITE 1 AC6 4 HIS B 701 HIS B 705 HIS B 711 MBS B 901 SITE 1 AC7 4 HIS B 651 ASP B 653 HIS B 666 HIS B 679 SITE 1 AC8 6 ASP B 658 GLY B 659 GLY B 661 VAL B 663 SITE 2 AC8 6 ASP B 681 GLU B 684 SITE 1 AC9 5 HOH B 20 HOH B 52 ASP B 607 ASP B 682 SITE 2 AC9 5 GLU B 684 SITE 1 BC1 6 HOH B 12 HOH B 64 ASP B 641 GLY B 673 SITE 2 BC1 6 ASN B 675 ASP B 677 SITE 1 BC2 17 HOH B 76 HOH B 109 HOH B 221 VAL B 663 SITE 2 BC2 17 LEU B 664 ALA B 665 HIS B 666 LEU B 697 SITE 3 BC2 17 HIS B 701 GLU B 702 HIS B 705 HIS B 711 SITE 4 BC2 17 LEU B 718 TYR B 720 PRO B 721 LEU B 722 SITE 5 BC2 17 ZN B 801 CRYST1 37.918 78.059 105.801 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026373 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009452 0.00000 MASTER 481 0 11 7 14 0 22 6 0 0 0 28 END