HEADER HYDROLASE 16-DEC-00 1HQG TITLE CRYSTAL STRUCTURE OF THE H141C ARGINASE VARIANT COMPLEXED WITH TITLE 2 PRODUCTS ORNITHINE AND UREA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE 1; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.5.3.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BINUCLEAR MANGANESE CLUSTER, PRODUCT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.D.COX,E.CAMA,D.M.COLLELUORI,D.E.ASH,D.W.CHRISTIANSON REVDAT 4 13-JUL-11 1HQG 1 VERSN REVDAT 3 24-FEB-09 1HQG 1 VERSN REVDAT 2 01-APR-03 1HQG 1 JRNL REVDAT 1 04-APR-01 1HQG 0 JRNL AUTH J.D.COX,E.CAMA,D.M.COLLELUORI,S.PETHE,J.L.BOUCHER,D.MANSUY, JRNL AUTH 2 D.E.ASH,D.W.CHRISTIANSON JRNL TITL MECHANISTIC AND METABOLIC INFERENCES FROM THE BINDING OF JRNL TITL 2 SUBSTRATE ANALOGUES AND PRODUCTS TO ARGINASE. JRNL REF BIOCHEMISTRY V. 40 2689 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11258880 JRNL DOI 10.1021/BI002318+ REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 17125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 781 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7185 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HQG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-00. REMARK 100 THE RCSB ID CODE IS RCSB012518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59154 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, BICINE, MANGANESE CHLORIDE, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 5 REMARK 465 LYS A 320 REMARK 465 PRO A 321 REMARK 465 PRO A 322 REMARK 465 LYS A 323 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 PRO B 5 REMARK 465 LYS B 320 REMARK 465 PRO B 321 REMARK 465 PRO B 322 REMARK 465 LYS B 323 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 SER C 3 REMARK 465 LYS C 4 REMARK 465 PRO C 5 REMARK 465 LYS C 320 REMARK 465 PRO C 321 REMARK 465 PRO C 322 REMARK 465 LYS C 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 65 -118.40 62.70 REMARK 500 ARG A 180 7.99 -163.76 REMARK 500 ASP A 181 76.07 -150.74 REMARK 500 GLN B 65 -118.43 62.71 REMARK 500 ARG B 180 8.04 -163.78 REMARK 500 ASP B 181 76.05 -150.74 REMARK 500 GLN C 65 -118.39 62.64 REMARK 500 ARG C 180 8.00 -163.73 REMARK 500 ASP C 181 76.06 -150.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 232 OD2 REMARK 620 2 ASP A 128 OD2 162.8 REMARK 620 3 URE A1901 O 72.4 106.7 REMARK 620 4 HOH A 604 O 78.6 84.3 81.5 REMARK 620 5 ASP A 124 OD2 84.0 91.8 152.9 80.8 REMARK 620 6 HIS A 101 ND1 103.4 93.6 100.7 177.3 97.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 126 ND1 REMARK 620 2 ASP A 232 OD2 170.6 REMARK 620 3 ASP A 234 OD1 99.8 89.5 REMARK 620 4 ASP A 234 OD2 98.8 85.8 56.2 REMARK 620 5 ASP A 124 OD1 90.2 92.1 80.2 136.3 REMARK 620 6 HOH A 604 O 85.9 85.2 163.5 138.6 84.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 URE B1902 O REMARK 620 2 HIS B 101 ND1 100.7 REMARK 620 3 ASP B 124 OD2 152.9 97.6 REMARK 620 4 ASP B 232 OD2 72.4 103.4 84.0 REMARK 620 5 HOH B 660 O 81.5 177.3 80.8 78.6 REMARK 620 6 ASP B 128 OD2 106.7 93.6 91.8 162.9 84.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD1 REMARK 620 2 HIS B 126 ND1 90.2 REMARK 620 3 ASP B 232 OD2 92.2 170.6 REMARK 620 4 ASP B 234 OD1 80.2 99.8 89.5 REMARK 620 5 HOH B 660 O 84.3 85.9 85.3 163.5 REMARK 620 6 ASP B 234 OD2 136.3 98.8 85.8 56.2 138.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 504 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 232 OD2 REMARK 620 2 URE C1903 O 72.4 REMARK 620 3 HOH C 714 O 78.6 81.5 REMARK 620 4 ASP C 128 OD2 162.9 106.7 84.4 REMARK 620 5 ASP C 124 OD2 84.0 152.9 80.8 91.8 REMARK 620 6 HIS C 101 ND1 103.4 100.7 177.4 93.6 97.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 505 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 234 OD1 REMARK 620 2 ASP C 234 OD2 56.2 REMARK 620 3 ASP C 124 OD1 80.2 136.3 REMARK 620 4 HOH C 714 O 163.5 138.6 84.3 REMARK 620 5 ASP C 232 OD2 89.5 85.8 92.1 85.2 REMARK 620 6 HIS C 126 ND1 99.8 98.8 90.2 86.0 170.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORN B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORN C 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE URE A 1901 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE URE B 1902 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE URE C 1903 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RLA RELATED DB: PDB REMARK 900 NATIVE ARGINASE DBREF 1HQG A 1 323 UNP P07824 ARGI1_RAT 1 323 DBREF 1HQG B 1 323 UNP P07824 ARGI1_RAT 1 323 DBREF 1HQG C 1 323 UNP P07824 ARGI1_RAT 1 323 SEQADV 1HQG CME A 141 UNP P07824 HIS 141 SEE REMARK 999 SEQADV 1HQG CME B 141 UNP P07824 HIS 141 SEE REMARK 999 SEQADV 1HQG CME C 141 UNP P07824 HIS 141 SEE REMARK 999 SEQRES 1 A 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 A 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 A 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 A 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 A 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 A 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 A 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 A 323 THR ILE SER VAL VAL LEU GLY GLY ASP HIS SER MET ALA SEQRES 9 A 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 A 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 A 323 THR PRO LEU THR THR SER SER GLY ASN LEU CME GLY GLN SEQRES 12 A 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 A 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 A 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 A 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 A 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 A 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 A 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 A 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 A 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 A 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 A 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 A 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 A 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 A 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS SEQRES 1 B 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 B 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 B 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 B 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 B 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 B 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 B 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 B 323 THR ILE SER VAL VAL LEU GLY GLY ASP HIS SER MET ALA SEQRES 9 B 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 B 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 B 323 THR PRO LEU THR THR SER SER GLY ASN LEU CME GLY GLN SEQRES 12 B 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 B 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 B 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 B 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 B 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 B 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 B 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 B 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 B 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 B 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 B 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 B 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 B 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 B 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS SEQRES 1 C 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 C 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 C 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 C 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 C 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 C 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 C 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 C 323 THR ILE SER VAL VAL LEU GLY GLY ASP HIS SER MET ALA SEQRES 9 C 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 C 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 C 323 THR PRO LEU THR THR SER SER GLY ASN LEU CME GLY GLN SEQRES 12 C 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 C 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 C 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 C 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 C 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 C 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 C 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 C 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 C 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 C 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 C 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 C 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 C 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 C 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS MODRES 1HQG CME A 141 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 1HQG CME B 141 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 1HQG CME C 141 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE HET CME A 141 10 HET CME B 141 10 HET CME C 141 10 HET MN A 500 1 HET MN A 501 1 HET MN B 502 1 HET MN B 503 1 HET MN C 504 1 HET MN C 505 1 HET ORN A 801 9 HET ORN B 902 9 HET ORN C 903 9 HET URE A1901 4 HET URE B1902 4 HET URE C1903 4 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM MN MANGANESE (II) ION HETNAM ORN L-ORNITHINE HETNAM URE UREA FORMUL 1 CME 3(C5 H11 N O3 S2) FORMUL 4 MN 6(MN 2+) FORMUL 10 ORN 3(C5 H12 N2 O2) FORMUL 13 URE 3(C H4 N2 O) FORMUL 16 HOH *167(H2 O) HELIX 1 1 GLY A 23 GLU A 25 5 3 HELIX 2 2 LYS A 26 ALA A 34 1 9 HELIX 3 3 GLY A 35 LYS A 41 1 7 HELIX 4 4 ASN A 69 ASN A 90 1 22 HELIX 5 5 ASP A 100 SER A 102 5 3 HELIX 6 6 MET A 103 HIS A 115 1 13 HELIX 7 7 GLN A 143 LEU A 149 1 7 HELIX 8 8 LYS A 150 LYS A 153 5 4 HELIX 9 9 SER A 170 LYS A 172 5 3 HELIX 10 10 ASP A 183 LEU A 193 1 11 HELIX 11 11 SER A 199 GLY A 207 1 9 HELIX 12 12 GLY A 207 GLY A 221 1 15 HELIX 13 13 SER A 253 GLY A 268 1 16 HELIX 14 14 ASN A 279 GLY A 283 5 5 HELIX 15 15 THR A 285 PHE A 304 1 20 HELIX 16 16 GLY B 23 GLU B 25 5 3 HELIX 17 17 LYS B 26 ALA B 34 1 9 HELIX 18 18 GLY B 35 LYS B 41 1 7 HELIX 19 19 ASN B 69 ASN B 90 1 22 HELIX 20 20 ASP B 100 SER B 102 5 3 HELIX 21 21 MET B 103 HIS B 115 1 13 HELIX 22 22 GLN B 143 LEU B 149 1 7 HELIX 23 23 LYS B 150 LYS B 153 5 4 HELIX 24 24 SER B 170 LYS B 172 5 3 HELIX 25 25 ASP B 183 LEU B 193 1 11 HELIX 26 26 SER B 199 GLY B 207 1 9 HELIX 27 27 GLY B 207 GLY B 221 1 15 HELIX 28 28 SER B 253 GLY B 268 1 16 HELIX 29 29 ASN B 279 GLY B 283 5 5 HELIX 30 30 THR B 285 PHE B 304 1 20 HELIX 31 31 GLY C 23 GLU C 25 5 3 HELIX 32 32 LYS C 26 ALA C 34 1 9 HELIX 33 33 GLY C 35 LYS C 41 1 7 HELIX 34 34 ASN C 69 ASN C 90 1 22 HELIX 35 35 ASP C 100 SER C 102 5 3 HELIX 36 36 MET C 103 HIS C 115 1 13 HELIX 37 37 GLN C 143 LEU C 149 1 7 HELIX 38 38 LYS C 150 LYS C 153 5 4 HELIX 39 39 SER C 170 LYS C 172 5 3 HELIX 40 40 ASP C 183 LEU C 193 1 11 HELIX 41 41 SER C 199 GLY C 207 1 9 HELIX 42 42 GLY C 207 GLY C 221 1 15 HELIX 43 43 SER C 253 GLY C 268 1 16 HELIX 44 44 ASN C 279 GLY C 283 5 5 HELIX 45 45 THR C 285 PHE C 304 1 20 SHEET 1 A 8 VAL A 47 ASP A 52 0 SHEET 2 A 8 ILE A 8 ALA A 13 1 O ILE A 8 N ARG A 48 SHEET 3 A 8 ILE A 93 GLY A 98 1 O ILE A 93 N GLU A 9 SHEET 4 A 8 LEU A 270 MET A 276 1 O SER A 271 N SER A 94 SHEET 5 A 8 ILE A 227 ASP A 232 1 O ILE A 227 N SER A 271 SHEET 6 A 8 CYS A 119 VAL A 123 1 O CYS A 119 N HIS A 228 SHEET 7 A 8 ILE A 174 ILE A 177 1 O VAL A 175 N TRP A 122 SHEET 8 A 8 LYS A 196 PHE A 198 1 O LYS A 196 N TYR A 176 SHEET 1 B 8 VAL B 47 ASP B 52 0 SHEET 2 B 8 ILE B 8 ALA B 13 1 O ILE B 8 N ARG B 48 SHEET 3 B 8 ILE B 93 GLY B 98 1 O ILE B 93 N GLU B 9 SHEET 4 B 8 LEU B 270 MET B 276 1 O SER B 271 N SER B 94 SHEET 5 B 8 ILE B 227 ASP B 232 1 O ILE B 227 N SER B 271 SHEET 6 B 8 CYS B 119 VAL B 123 1 O CYS B 119 N HIS B 228 SHEET 7 B 8 ILE B 174 ILE B 177 1 O VAL B 175 N TRP B 122 SHEET 8 B 8 LYS B 196 PHE B 198 1 O LYS B 196 N TYR B 176 SHEET 1 C 8 VAL C 47 ASP C 52 0 SHEET 2 C 8 ILE C 8 ALA C 13 1 O ILE C 8 N ARG C 48 SHEET 3 C 8 ILE C 93 GLY C 98 1 O ILE C 93 N GLU C 9 SHEET 4 C 8 LEU C 270 MET C 276 1 O SER C 271 N SER C 94 SHEET 5 C 8 ILE C 227 ASP C 232 1 O ILE C 227 N SER C 271 SHEET 6 C 8 CYS C 119 VAL C 123 1 O CYS C 119 N HIS C 228 SHEET 7 C 8 ILE C 174 ILE C 177 1 O VAL C 175 N TRP C 122 SHEET 8 C 8 LYS C 196 PHE C 198 1 O LYS C 196 N TYR C 176 LINK C LEU A 140 N CME A 141 1555 1555 1.33 LINK C CME A 141 N GLY A 142 1555 1555 1.33 LINK MN MN A 500 OD2 ASP A 232 1555 1555 2.34 LINK MN MN A 500 OD2 ASP A 128 1555 1555 2.10 LINK MN MN A 500 O URE A1901 1555 1555 1.82 LINK MN MN A 500 O HOH A 604 1555 1555 2.30 LINK MN MN A 500 OD2 ASP A 124 1555 1555 2.09 LINK MN MN A 500 ND1 HIS A 101 1555 1555 2.25 LINK MN MN A 501 ND1 HIS A 126 1555 1555 2.25 LINK MN MN A 501 OD2 ASP A 232 1555 1555 2.35 LINK MN MN A 501 OD1 ASP A 234 1555 1555 2.46 LINK MN MN A 501 OD2 ASP A 234 1555 1555 2.19 LINK MN MN A 501 OD1 ASP A 124 1555 1555 2.15 LINK MN MN A 501 O HOH A 604 1555 1555 1.97 LINK C LEU B 140 N CME B 141 1555 1555 1.33 LINK C CME B 141 N GLY B 142 1555 1555 1.33 LINK MN MN B 502 O URE B1902 1555 1555 1.82 LINK MN MN B 502 ND1 HIS B 101 1555 1555 2.25 LINK MN MN B 502 OD2 ASP B 124 1555 1555 2.09 LINK MN MN B 502 OD2 ASP B 232 1555 1555 2.34 LINK MN MN B 502 O HOH B 660 1555 1555 2.30 LINK MN MN B 502 OD2 ASP B 128 1555 1555 2.10 LINK MN MN B 503 OD1 ASP B 124 1555 1555 2.15 LINK MN MN B 503 ND1 HIS B 126 1555 1555 2.25 LINK MN MN B 503 OD2 ASP B 232 1555 1555 2.35 LINK MN MN B 503 OD1 ASP B 234 1555 1555 2.46 LINK MN MN B 503 O HOH B 660 1555 1555 1.97 LINK MN MN B 503 OD2 ASP B 234 1555 1555 2.19 LINK C LEU C 140 N CME C 141 1555 1555 1.33 LINK C CME C 141 N GLY C 142 1555 1555 1.33 LINK MN MN C 504 OD2 ASP C 232 1555 1555 2.34 LINK MN MN C 504 O URE C1903 1555 1555 1.82 LINK MN MN C 504 O HOH C 714 1555 1555 2.30 LINK MN MN C 504 OD2 ASP C 128 1555 1555 2.10 LINK MN MN C 504 OD2 ASP C 124 1555 1555 2.09 LINK MN MN C 504 ND1 HIS C 101 1555 1555 2.25 LINK MN MN C 505 OD1 ASP C 234 1555 1555 2.46 LINK MN MN C 505 OD2 ASP C 234 1555 1555 2.19 LINK MN MN C 505 OD1 ASP C 124 1555 1555 2.15 LINK MN MN C 505 O HOH C 714 1555 1555 1.97 LINK MN MN C 505 OD2 ASP C 232 1555 1555 2.35 LINK MN MN C 505 ND1 HIS C 126 1555 1555 2.25 CISPEP 1 GLY A 98 GLY A 99 0 -0.11 CISPEP 2 GLY B 98 GLY B 99 0 -0.13 CISPEP 3 GLY C 98 GLY C 99 0 -0.10 SITE 1 AC1 7 HIS A 101 ASP A 124 ASP A 128 ASP A 232 SITE 2 AC1 7 MN A 501 HOH A 604 URE A1901 SITE 1 AC2 7 ASP A 124 HIS A 126 ASP A 232 ASP A 234 SITE 2 AC2 7 MN A 500 HOH A 604 URE A1901 SITE 1 AC3 7 HIS B 101 ASP B 124 ASP B 128 ASP B 232 SITE 2 AC3 7 MN B 503 HOH B 660 URE B1902 SITE 1 AC4 7 ASP B 124 HIS B 126 ASP B 232 ASP B 234 SITE 2 AC4 7 MN B 502 HOH B 660 URE B1902 SITE 1 AC5 7 HIS C 101 ASP C 124 ASP C 128 ASP C 232 SITE 2 AC5 7 MN C 505 HOH C 714 URE C1903 SITE 1 AC6 7 ASP C 124 HIS C 126 ASP C 232 ASP C 234 SITE 2 AC6 7 MN C 504 HOH C 714 URE C1903 SITE 1 AC7 11 HIS A 126 ASP A 128 ASN A 130 SER A 137 SITE 2 AC7 11 CME A 141 ASP A 183 GLU A 186 HOH A 604 SITE 3 AC7 11 HOH A 641 HOH A 642 URE A1901 SITE 1 AC8 11 HIS B 126 ASP B 128 ASN B 130 SER B 137 SITE 2 AC8 11 CME B 141 ASP B 183 GLU B 186 HOH B 660 SITE 3 AC8 11 HOH B 696 HOH B 697 URE B1902 SITE 1 AC9 11 HIS C 126 ASP C 128 ASN C 130 SER C 137 SITE 2 AC9 11 CME C 141 ASP C 183 GLU C 186 HOH C 714 SITE 3 AC9 11 HOH C 752 HOH C 753 URE C1903 SITE 1 BC1 11 HIS A 101 ASP A 128 CME A 141 ASP A 232 SITE 2 BC1 11 ASP A 234 GLU A 277 MN A 500 MN A 501 SITE 3 BC1 11 HOH A 604 HOH A 644 ORN A 801 SITE 1 BC2 11 HIS B 101 ASP B 128 CME B 141 ASP B 232 SITE 2 BC2 11 ASP B 234 GLU B 277 MN B 502 MN B 503 SITE 3 BC2 11 HOH B 660 HOH B 699 ORN B 902 SITE 1 BC3 11 HIS C 101 ASP C 128 CME C 141 ASP C 232 SITE 2 BC3 11 ASP C 234 GLU C 277 MN C 504 MN C 505 SITE 3 BC3 11 HOH C 714 HOH C 755 ORN C 903 CRYST1 88.200 88.200 106.500 90.00 90.00 120.00 P 32 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011338 0.006546 0.000000 0.00000 SCALE2 0.000000 0.013092 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009390 0.00000 MASTER 393 0 15 45 24 0 30 6 0 0 0 75 END