HEADER BIOSYNTHETIC PROTEIN 08-DEC-00 1HO4 TITLE CRYSTAL STRUCTURE OF PYRIDOXINE 5'-PHOSPHATE SYNTHASE IN COMPLEX WITH TITLE 2 PYRIDOXINE 5'-PHOSPHATE AND INORGANIC PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIDOXINE 5'-PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PYRIDOXAL PHOSPHATE BIOSYNTHETIC PROTEIN PDXJ; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PDXJ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM83; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PASK-IBA3 KEYWDS TIM BARREL, OPEN-CLOSED TRANSITION, ENZYME-PRODUCT COMPLEX, WATER KEYWDS 2 CHANNEL, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.GARRIDO-FRANCO,B.LABER,R.HUBER,T.CLAUSEN REVDAT 5 31-JAN-18 1HO4 1 REMARK REVDAT 4 13-JUL-11 1HO4 1 VERSN REVDAT 3 24-FEB-09 1HO4 1 VERSN REVDAT 2 01-APR-03 1HO4 1 JRNL REVDAT 1 28-MAR-01 1HO4 0 JRNL AUTH M.G.FRANCO,B.LABER,R.HUBER,T.CLAUSEN JRNL TITL STRUCTURAL BASIS FOR THE FUNCTION OF PYRIDOXINE 5'-PHOSPHATE JRNL TITL 2 SYNTHASE. JRNL REF STRUCTURE V. 9 245 2001 JRNL REFN ISSN 0969-2126 JRNL PMID 11286891 JRNL DOI 10.1016/S0969-2126(01)00584-6 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH AND HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 52092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2736 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7334 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 735 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : 1.540 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.330 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HO4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-00. REMARK 100 THE DEPOSITION ID IS D_1000012477. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110743 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.20800 REMARK 200 R SYM FOR SHELL (I) : 0.20800 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1HOI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG6000, 2M NACL, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 20K, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.75000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.75000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 64.40000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 78.15000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 64.40000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.15000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.75000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 64.40000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 78.15000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.75000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 64.40000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 78.15000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS AN OCTAMER GENERATED FROM THE REMARK 300 TETRAMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: X,-Y,-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 ARG D 98 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 177 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 817 O HOH D 842 2.15 REMARK 500 O GLU D 100 O HOH D 832 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 50 41.66 38.64 REMARK 500 HIS A 52 -80.94 -137.17 REMARK 500 THR A 67 -97.66 -102.42 REMARK 500 GLN A 112 45.54 -148.38 REMARK 500 HIS A 193 117.10 90.88 REMARK 500 ARG B 50 40.70 36.42 REMARK 500 HIS B 52 -76.93 -118.13 REMARK 500 THR B 67 -104.44 -97.97 REMARK 500 ARG B 98 -53.40 107.84 REMARK 500 THR B 102 -171.16 -171.41 REMARK 500 GLU B 104 -92.15 -68.30 REMARK 500 GLN B 112 38.41 -148.92 REMARK 500 HIS B 193 113.60 96.16 REMARK 500 HIS C 52 -80.50 -132.88 REMARK 500 THR C 67 -101.67 -94.26 REMARK 500 GLN C 112 48.24 -151.29 REMARK 500 HIS C 193 111.85 105.79 REMARK 500 HIS D 52 -81.12 -118.52 REMARK 500 THR D 67 -100.81 -105.82 REMARK 500 GLN D 99 38.92 -86.43 REMARK 500 GLU D 100 -22.93 -149.82 REMARK 500 GLN D 112 40.86 -145.00 REMARK 500 HIS D 193 115.87 100.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PXP D 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PXP A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PXP C 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PXP B 804 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HO1 RELATED DB: PDB REMARK 900 1HO1 IS THE NATIVE PROTEIN DBREF 1HO4 A 2 243 UNP P0A794 PDXJ_ECOLI 1 242 DBREF 1HO4 B 2 243 UNP P0A794 PDXJ_ECOLI 1 242 DBREF 1HO4 C 2 243 UNP P0A794 PDXJ_ECOLI 1 242 DBREF 1HO4 D 2 243 UNP P0A794 PDXJ_ECOLI 1 242 SEQRES 1 A 242 ALA GLU LEU LEU LEU GLY VAL ASN ILE ASP HIS ILE ALA SEQRES 2 A 242 THR LEU ARG ASN ALA ARG GLY THR ALA TYR PRO ASP PRO SEQRES 3 A 242 VAL GLN ALA ALA PHE ILE ALA GLU GLN ALA GLY ALA ASP SEQRES 4 A 242 GLY ILE THR VAL HIS LEU ARG GLU ASP ARG ARG HIS ILE SEQRES 5 A 242 THR ASP ARG ASP VAL ARG ILE LEU ARG GLN THR LEU ASP SEQRES 6 A 242 THR ARG MET ASN LEU GLU MET ALA VAL THR GLU GLU MET SEQRES 7 A 242 LEU ALA ILE ALA VAL GLU THR LYS PRO HIS PHE CYS CYS SEQRES 8 A 242 LEU VAL PRO GLU LYS ARG GLN GLU VAL THR THR GLU GLY SEQRES 9 A 242 GLY LEU ASP VAL ALA GLY GLN ARG ASP LYS MET ARG ASP SEQRES 10 A 242 ALA CYS LYS ARG LEU ALA ASP ALA GLY ILE GLN VAL SER SEQRES 11 A 242 LEU PHE ILE ASP ALA ASP GLU GLU GLN ILE LYS ALA ALA SEQRES 12 A 242 ALA GLU VAL GLY ALA PRO PHE ILE GLU ILE HIS THR GLY SEQRES 13 A 242 CYS TYR ALA ASP ALA LYS THR ASP ALA GLU GLN ALA GLN SEQRES 14 A 242 GLU LEU ALA ARG ILE ALA LYS ALA ALA THR PHE ALA ALA SEQRES 15 A 242 SER LEU GLY LEU LYS VAL ASN ALA GLY HIS GLY LEU THR SEQRES 16 A 242 TYR HIS ASN VAL LYS ALA ILE ALA ALA ILE PRO GLU MET SEQRES 17 A 242 HIS GLU LEU ASN ILE GLY HIS ALA ILE ILE GLY ARG ALA SEQRES 18 A 242 VAL MET THR GLY LEU LYS ASP ALA VAL ALA GLU MET LYS SEQRES 19 A 242 ARG LEU MET LEU GLU ALA ARG GLY SEQRES 1 B 242 ALA GLU LEU LEU LEU GLY VAL ASN ILE ASP HIS ILE ALA SEQRES 2 B 242 THR LEU ARG ASN ALA ARG GLY THR ALA TYR PRO ASP PRO SEQRES 3 B 242 VAL GLN ALA ALA PHE ILE ALA GLU GLN ALA GLY ALA ASP SEQRES 4 B 242 GLY ILE THR VAL HIS LEU ARG GLU ASP ARG ARG HIS ILE SEQRES 5 B 242 THR ASP ARG ASP VAL ARG ILE LEU ARG GLN THR LEU ASP SEQRES 6 B 242 THR ARG MET ASN LEU GLU MET ALA VAL THR GLU GLU MET SEQRES 7 B 242 LEU ALA ILE ALA VAL GLU THR LYS PRO HIS PHE CYS CYS SEQRES 8 B 242 LEU VAL PRO GLU LYS ARG GLN GLU VAL THR THR GLU GLY SEQRES 9 B 242 GLY LEU ASP VAL ALA GLY GLN ARG ASP LYS MET ARG ASP SEQRES 10 B 242 ALA CYS LYS ARG LEU ALA ASP ALA GLY ILE GLN VAL SER SEQRES 11 B 242 LEU PHE ILE ASP ALA ASP GLU GLU GLN ILE LYS ALA ALA SEQRES 12 B 242 ALA GLU VAL GLY ALA PRO PHE ILE GLU ILE HIS THR GLY SEQRES 13 B 242 CYS TYR ALA ASP ALA LYS THR ASP ALA GLU GLN ALA GLN SEQRES 14 B 242 GLU LEU ALA ARG ILE ALA LYS ALA ALA THR PHE ALA ALA SEQRES 15 B 242 SER LEU GLY LEU LYS VAL ASN ALA GLY HIS GLY LEU THR SEQRES 16 B 242 TYR HIS ASN VAL LYS ALA ILE ALA ALA ILE PRO GLU MET SEQRES 17 B 242 HIS GLU LEU ASN ILE GLY HIS ALA ILE ILE GLY ARG ALA SEQRES 18 B 242 VAL MET THR GLY LEU LYS ASP ALA VAL ALA GLU MET LYS SEQRES 19 B 242 ARG LEU MET LEU GLU ALA ARG GLY SEQRES 1 C 242 ALA GLU LEU LEU LEU GLY VAL ASN ILE ASP HIS ILE ALA SEQRES 2 C 242 THR LEU ARG ASN ALA ARG GLY THR ALA TYR PRO ASP PRO SEQRES 3 C 242 VAL GLN ALA ALA PHE ILE ALA GLU GLN ALA GLY ALA ASP SEQRES 4 C 242 GLY ILE THR VAL HIS LEU ARG GLU ASP ARG ARG HIS ILE SEQRES 5 C 242 THR ASP ARG ASP VAL ARG ILE LEU ARG GLN THR LEU ASP SEQRES 6 C 242 THR ARG MET ASN LEU GLU MET ALA VAL THR GLU GLU MET SEQRES 7 C 242 LEU ALA ILE ALA VAL GLU THR LYS PRO HIS PHE CYS CYS SEQRES 8 C 242 LEU VAL PRO GLU LYS ARG GLN GLU VAL THR THR GLU GLY SEQRES 9 C 242 GLY LEU ASP VAL ALA GLY GLN ARG ASP LYS MET ARG ASP SEQRES 10 C 242 ALA CYS LYS ARG LEU ALA ASP ALA GLY ILE GLN VAL SER SEQRES 11 C 242 LEU PHE ILE ASP ALA ASP GLU GLU GLN ILE LYS ALA ALA SEQRES 12 C 242 ALA GLU VAL GLY ALA PRO PHE ILE GLU ILE HIS THR GLY SEQRES 13 C 242 CYS TYR ALA ASP ALA LYS THR ASP ALA GLU GLN ALA GLN SEQRES 14 C 242 GLU LEU ALA ARG ILE ALA LYS ALA ALA THR PHE ALA ALA SEQRES 15 C 242 SER LEU GLY LEU LYS VAL ASN ALA GLY HIS GLY LEU THR SEQRES 16 C 242 TYR HIS ASN VAL LYS ALA ILE ALA ALA ILE PRO GLU MET SEQRES 17 C 242 HIS GLU LEU ASN ILE GLY HIS ALA ILE ILE GLY ARG ALA SEQRES 18 C 242 VAL MET THR GLY LEU LYS ASP ALA VAL ALA GLU MET LYS SEQRES 19 C 242 ARG LEU MET LEU GLU ALA ARG GLY SEQRES 1 D 242 ALA GLU LEU LEU LEU GLY VAL ASN ILE ASP HIS ILE ALA SEQRES 2 D 242 THR LEU ARG ASN ALA ARG GLY THR ALA TYR PRO ASP PRO SEQRES 3 D 242 VAL GLN ALA ALA PHE ILE ALA GLU GLN ALA GLY ALA ASP SEQRES 4 D 242 GLY ILE THR VAL HIS LEU ARG GLU ASP ARG ARG HIS ILE SEQRES 5 D 242 THR ASP ARG ASP VAL ARG ILE LEU ARG GLN THR LEU ASP SEQRES 6 D 242 THR ARG MET ASN LEU GLU MET ALA VAL THR GLU GLU MET SEQRES 7 D 242 LEU ALA ILE ALA VAL GLU THR LYS PRO HIS PHE CYS CYS SEQRES 8 D 242 LEU VAL PRO GLU LYS ARG GLN GLU VAL THR THR GLU GLY SEQRES 9 D 242 GLY LEU ASP VAL ALA GLY GLN ARG ASP LYS MET ARG ASP SEQRES 10 D 242 ALA CYS LYS ARG LEU ALA ASP ALA GLY ILE GLN VAL SER SEQRES 11 D 242 LEU PHE ILE ASP ALA ASP GLU GLU GLN ILE LYS ALA ALA SEQRES 12 D 242 ALA GLU VAL GLY ALA PRO PHE ILE GLU ILE HIS THR GLY SEQRES 13 D 242 CYS TYR ALA ASP ALA LYS THR ASP ALA GLU GLN ALA GLN SEQRES 14 D 242 GLU LEU ALA ARG ILE ALA LYS ALA ALA THR PHE ALA ALA SEQRES 15 D 242 SER LEU GLY LEU LYS VAL ASN ALA GLY HIS GLY LEU THR SEQRES 16 D 242 TYR HIS ASN VAL LYS ALA ILE ALA ALA ILE PRO GLU MET SEQRES 17 D 242 HIS GLU LEU ASN ILE GLY HIS ALA ILE ILE GLY ARG ALA SEQRES 18 D 242 VAL MET THR GLY LEU LYS ASP ALA VAL ALA GLU MET LYS SEQRES 19 D 242 ARG LEU MET LEU GLU ALA ARG GLY HET PO4 A 901 5 HET PXP A 802 16 HET PO4 B 903 5 HET PXP B 804 16 HET PO4 C 902 5 HET PXP C 803 16 HET PXP D 801 16 HETNAM PO4 PHOSPHATE ION HETNAM PXP PYRIDOXINE-5'-PHOSPHATE FORMUL 5 PO4 3(O4 P 3-) FORMUL 6 PXP 4(C8 H12 N O6 P) FORMUL 12 HOH *735(H2 O) HELIX 1 1 ILE A 10 ASN A 18 1 9 HELIX 2 2 ASP A 26 GLN A 36 1 11 HELIX 3 3 THR A 54 LEU A 65 1 12 HELIX 4 4 THR A 76 LYS A 87 1 12 HELIX 5 5 GLN A 112 ALA A 126 1 15 HELIX 6 6 ASP A 137 VAL A 147 1 11 HELIX 7 7 THR A 156 ASP A 161 1 6 HELIX 8 8 THR A 164 LEU A 185 1 22 HELIX 9 9 ASN A 199 ILE A 206 1 8 HELIX 10 10 GLY A 215 GLY A 226 1 12 HELIX 11 11 GLY A 226 GLY A 243 1 18 HELIX 12 12 ILE B 10 ALA B 19 1 10 HELIX 13 13 ASP B 26 GLN B 36 1 11 HELIX 14 14 THR B 54 LEU B 65 1 12 HELIX 15 15 THR B 76 LYS B 87 1 12 HELIX 16 16 VAL B 109 GLY B 111 5 3 HELIX 17 17 GLN B 112 ALA B 126 1 15 HELIX 18 18 ASP B 137 VAL B 147 1 11 HELIX 19 19 THR B 156 ALA B 162 1 7 HELIX 20 20 THR B 164 LEU B 185 1 22 HELIX 21 21 ASN B 199 ALA B 205 1 7 HELIX 22 22 GLY B 215 GLY B 226 1 12 HELIX 23 23 GLY B 226 GLY B 243 1 18 HELIX 24 24 ILE C 10 ASN C 18 1 9 HELIX 25 25 ASP C 26 GLN C 36 1 11 HELIX 26 26 THR C 54 LEU C 65 1 12 HELIX 27 27 THR C 76 LYS C 87 1 12 HELIX 28 28 GLN C 112 ALA C 126 1 15 HELIX 29 29 ASP C 137 VAL C 147 1 11 HELIX 30 30 THR C 156 ALA C 162 1 7 HELIX 31 31 THR C 164 LEU C 185 1 22 HELIX 32 32 ASN C 199 ILE C 206 1 8 HELIX 33 33 GLY C 215 GLY C 226 1 12 HELIX 34 34 GLY C 226 GLY C 243 1 18 HELIX 35 35 ILE D 10 ASN D 18 1 9 HELIX 36 36 ASP D 26 GLN D 36 1 11 HELIX 37 37 THR D 54 LEU D 65 1 12 HELIX 38 38 THR D 76 LYS D 87 1 12 HELIX 39 39 GLN D 112 ALA D 126 1 15 HELIX 40 40 ASP D 137 GLY D 148 1 12 HELIX 41 41 THR D 156 ALA D 162 1 7 HELIX 42 42 THR D 164 LEU D 185 1 22 HELIX 43 43 ASN D 199 ILE D 206 1 8 HELIX 44 44 GLY D 215 GLY D 226 1 12 HELIX 45 45 GLY D 226 GLY D 243 1 18 SHEET 1 A 9 LEU A 5 ASN A 9 0 SHEET 2 A 9 GLY A 41 HIS A 45 1 O GLY A 41 N VAL A 8 SHEET 3 A 9 MET A 69 ALA A 74 1 N ASN A 70 O ILE A 42 SHEET 4 A 9 PHE A 90 VAL A 94 1 N PHE A 90 O MET A 69 SHEET 5 A 9 GLN A 129 ILE A 134 1 O GLN A 129 N CYS A 91 SHEET 6 A 9 PHE A 151 HIS A 155 1 O PHE A 151 N LEU A 132 SHEET 7 A 9 LYS A 188 GLY A 192 1 O LYS A 188 N ILE A 152 SHEET 8 A 9 MET A 209 ILE A 214 1 N HIS A 210 O VAL A 189 SHEET 9 A 9 LEU A 5 ASN A 9 1 N LEU A 5 O HIS A 210 SHEET 1 B 9 LEU B 5 ASN B 9 0 SHEET 2 B 9 GLY B 41 HIS B 45 1 O GLY B 41 N VAL B 8 SHEET 3 B 9 MET B 69 MET B 73 1 N ASN B 70 O ILE B 42 SHEET 4 B 9 PHE B 90 LEU B 93 1 N PHE B 90 O MET B 69 SHEET 5 B 9 GLN B 129 ILE B 134 1 O GLN B 129 N CYS B 91 SHEET 6 B 9 PHE B 151 HIS B 155 1 N PHE B 151 O VAL B 130 SHEET 7 B 9 LYS B 188 GLY B 192 1 O LYS B 188 N ILE B 152 SHEET 8 B 9 MET B 209 ILE B 214 1 N HIS B 210 O VAL B 189 SHEET 9 B 9 LEU B 5 ASN B 9 1 N LEU B 5 O HIS B 210 SHEET 1 C 9 LEU C 5 ASN C 9 0 SHEET 2 C 9 GLY C 41 HIS C 45 1 O GLY C 41 N VAL C 8 SHEET 3 C 9 MET C 69 MET C 73 1 N ASN C 70 O ILE C 42 SHEET 4 C 9 PHE C 90 LEU C 93 1 O PHE C 90 N LEU C 71 SHEET 5 C 9 GLN C 129 ILE C 134 1 O GLN C 129 N CYS C 91 SHEET 6 C 9 PHE C 151 HIS C 155 1 O PHE C 151 N LEU C 132 SHEET 7 C 9 LYS C 188 GLY C 192 1 O LYS C 188 N ILE C 152 SHEET 8 C 9 MET C 209 ILE C 214 1 N HIS C 210 O VAL C 189 SHEET 9 C 9 LEU C 5 ASN C 9 1 N LEU C 5 O HIS C 210 SHEET 1 D 9 LEU D 5 ASN D 9 0 SHEET 2 D 9 GLY D 41 HIS D 45 1 O GLY D 41 N VAL D 8 SHEET 3 D 9 MET D 69 MET D 73 1 N ASN D 70 O ILE D 42 SHEET 4 D 9 PHE D 90 LEU D 93 1 O PHE D 90 N LEU D 71 SHEET 5 D 9 GLN D 129 ILE D 134 1 O GLN D 129 N CYS D 91 SHEET 6 D 9 PHE D 151 HIS D 155 1 N PHE D 151 O VAL D 130 SHEET 7 D 9 LYS D 188 GLY D 192 1 O LYS D 188 N ILE D 152 SHEET 8 D 9 MET D 209 ILE D 214 1 N HIS D 210 O VAL D 189 SHEET 9 D 9 LEU D 5 ASN D 9 1 O LEU D 5 N LEU D 212 CISPEP 1 TYR A 24 PRO A 25 0 -1.16 CISPEP 2 TYR B 24 PRO B 25 0 -0.02 CISPEP 3 TYR C 24 PRO C 25 0 -0.24 CISPEP 4 TYR D 24 PRO D 25 0 -0.15 SITE 1 AC1 11 ASP A 11 HIS A 12 ARG A 20 HIS A 45 SITE 2 AC1 11 ARG A 47 HIS A 52 THR A 102 PXP A 802 SITE 3 AC1 11 HOH A 972 HOH A 993 HOH A1093 SITE 1 AC2 10 ARG B 20 ASP C 11 HIS C 12 HIS C 45 SITE 2 AC2 10 ARG C 47 HIS C 52 THR C 102 PXP C 803 SITE 3 AC2 10 HOH C1075 HOH C1084 SITE 1 AC3 10 ASP B 11 HIS B 12 HIS B 45 ARG B 47 SITE 2 AC3 10 HIS B 52 THR B 102 PXP B 804 HOH B 956 SITE 3 AC3 10 HOH B1070 ARG C 20 SITE 1 AC4 18 ASN D 9 ARG D 20 GLU D 72 VAL D 94 SITE 2 AC4 18 PHE D 133 GLU D 153 HIS D 193 GLY D 194 SITE 3 AC4 18 ASN D 213 ILE D 214 GLY D 215 HIS D 216 SITE 4 AC4 18 HOH D 816 HOH D 850 HOH D 852 HOH D 969 SITE 5 AC4 18 HOH D 970 HOH D 992 SITE 1 AC5 17 ARG A 20 GLU A 72 VAL A 94 THR A 102 SITE 2 AC5 17 THR A 103 PHE A 133 GLU A 153 HIS A 193 SITE 3 AC5 17 GLY A 194 ASN A 213 ILE A 214 GLY A 215 SITE 4 AC5 17 HIS A 216 PO4 A 901 HOH A 956 HOH A 968 SITE 5 AC5 17 HOH A 972 SITE 1 AC6 16 ARG B 20 GLU C 72 VAL C 94 THR C 103 SITE 2 AC6 16 PHE C 133 GLU C 153 HIS C 193 GLY C 194 SITE 3 AC6 16 ASN C 213 ILE C 214 GLY C 215 HIS C 216 SITE 4 AC6 16 PO4 C 902 HOH C 908 HOH C 915 HOH C 966 SITE 1 AC7 16 GLU B 72 VAL B 94 THR B 103 GLU B 153 SITE 2 AC7 16 GLY B 192 HIS B 193 GLY B 194 ASN B 213 SITE 3 AC7 16 ILE B 214 GLY B 215 HIS B 216 PO4 B 903 SITE 4 AC7 16 HOH B 909 HOH B 935 HOH B 956 ARG C 20 CRYST1 128.800 156.300 127.500 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007764 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006398 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007843 0.00000 MASTER 367 0 7 45 36 0 27 6 0 0 0 76 END