HEADER HYDROLASE(SERINE PROTEASE) 03-JUN-91 1HGT TITLE STRUCTURE OF THE HIRUGEN AND HIRULOG 1 COMPLEXES OF ALPHA- TITLE 2 THROMBIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-THROMBIN (SMALL SUBUNIT); COMPND 3 CHAIN: L; COMPND 4 EC: 3.4.21.5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ALPHA-THROMBIN (LARGE SUBUNIT); COMPND 8 CHAIN: H; COMPND 9 EC: 3.4.21.5; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HIRUGEN; COMPND 13 CHAIN: I; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HIRUDO MEDICINALIS; SOURCE 11 ORGANISM_COMMON: MEDICINAL LEECH; SOURCE 12 ORGANISM_TAXID: 6421 KEYWDS HYDROLASE(SERINE PROTEASE) EXPDTA X-RAY DIFFRACTION AUTHOR A.TULINSKY,E.SKRZYPCZAK-JANKUN REVDAT 2 24-FEB-09 1HGT 1 VERSN REVDAT 1 31-JAN-94 1HGT 0 JRNL AUTH E.SKRZYPCZAK-JANKUN,V.E.CARPEROS,K.G.RAVICHANDRAN, JRNL AUTH 2 A.TULINSKY,M.WESTBROOK,J.M.MARAGANORE JRNL TITL STRUCTURE OF THE HIRUGEN AND HIRULOG 1 COMPLEXES JRNL TITL 2 OF ALPHA-THROMBIN. JRNL REF J.MOL.BIOL. V. 221 1379 1991 JRNL REFN ISSN 0022-2836 JRNL PMID 1942057 JRNL DOI 10.1016/0022-2836(91)80132-E REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.J.RYDEL,A.TULINSKY,W.BODE,R.HUBER REMARK 1 TITL REFINED STRUCTURE OF THE HIRUDIN-THROMBIN COMPLEX REMARK 1 REF J.MOL.BIOL. V. 221 583 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.J.RYDEL,K.G.RAVICHANDRAN,A.TULINSKY,W.BODE, REMARK 1 AUTH 2 R.HUBER,C.ROITSCH,J.W.FENTON /II REMARK 1 TITL THE STRUCTURE OF A COMPLEX OF RECOMBINANT HIRUDIN REMARK 1 TITL 2 AND HUMAN ALPHA-THROMBIN REMARK 1 REF SCIENCE V. 249 277 1990 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2435 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.021 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.044 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.055 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.017 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.220 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.220 ; 0.550 REMARK 3 MULTIPLE TORSION (A) : 0.320 ; 0.550 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.310 ; 0.550 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 3.100 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 25.500; 20.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.560 ; 0.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.030 ; 1.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.020 ; 1.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.650 ; 1.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HGT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.40000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.40000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THROMBIN IS CLEAVED BETWEEN RESIDUES 15 AND 16. CHAIN REMARK 400 INDICATOR *L* IS USED FOR RESIDUES 1H - 15 AND CHAIN REMARK 400 INDICATOR *H* IS USED FOR RESIDUES 16 - 247. CHAIN REMARK 400 INDICATOR *I* IS USED FOR HIRUGEN. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR H 148A REMARK 465 ALA H 148B REMARK 465 ASN H 148C REMARK 465 VAL H 148D REMARK 465 GLY H 148E REMARK 465 LYS H 148F REMARK 465 ASN I 53 REMARK 465 GLU I 54 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG H 50 O LEU H 108 1.91 REMARK 500 NH2 ARG H 50 OE1 GLU H 86 1.96 REMARK 500 NH2 ARG H 165 O THR H 177 2.10 REMARK 500 O HOH H 540 O HOH H 974 2.12 REMARK 500 O PHE L 1G N GLY L 1D 2.13 REMARK 500 OE1 GLU H 97A NH1 ARG H 175 2.13 REMARK 500 CB LYS H 185 OD1 ASP H 186A 2.13 REMARK 500 OD2 ASP L 1A NZ LYS L 9 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG L 15 O LYS H 169 4556 2.11 REMARK 500 NH1 ARG L 15 O THR H 172 4556 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP L 1A CA - CB - CG ANGL. DEV. = -13.9 DEGREES REMARK 500 ASP L 1A CB - CG - OD1 ANGL. DEV. = -10.1 DEGREES REMARK 500 ASP L 1A CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 GLU L 13 C - N - CA ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG L 14D CD - NE - CZ ANGL. DEV. = 15.6 DEGREES REMARK 500 ARG L 14D NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 LEU L 14G CB - CA - C ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG L 15 CD - NE - CZ ANGL. DEV. = -12.0 DEGREES REMARK 500 ARG L 15 NH1 - CZ - NH2 ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG L 15 NE - CZ - NH1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG L 15 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 SER H 27 N - CA - CB ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG H 35 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG H 35 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 LYS H 36 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 LEU H 41 CB - CA - C ANGL. DEV. = 14.8 DEGREES REMARK 500 LEU H 46 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG H 50 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG H 50 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR H 60A CB - CG - CD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP H 60E CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 LEU H 64 N - CA - CB ANGL. DEV. = -12.5 DEGREES REMARK 500 LEU H 64 CB - CG - CD2 ANGL. DEV. = -10.2 DEGREES REMARK 500 LEU H 64 N - CA - C ANGL. DEV. = 18.3 DEGREES REMARK 500 ARG H 73 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG H 75 NE - CZ - NH1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG H 75 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 TYR H 76 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG H 77A NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG H 77A NE - CZ - NH2 ANGL. DEV. = -8.9 DEGREES REMARK 500 ARG H 93 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 TYR H 94 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG H 97 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG H 97 NE - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG H 101 NE - CZ - NH1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG H 101 NE - CZ - NH2 ANGL. DEV. = -11.7 DEGREES REMARK 500 ASP H 102 CB - CG - OD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 LYS H 110 N - CA - CB ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG H 126 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG H 126 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG H 137 CG - CD - NE ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG H 137 CD - NE - CZ ANGL. DEV. = 17.1 DEGREES REMARK 500 ARG H 137 NE - CZ - NH1 ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG H 137 NE - CZ - NH2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ARG H 175 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 TYR H 184A CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG H 187 CD - NE - CZ ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG H 187 NE - CZ - NH2 ANGL. DEV. = 5.0 DEGREES REMARK 500 CYS H 191 CB - CA - C ANGL. DEV. = 13.3 DEGREES REMARK 500 MET H 201 CA - CB - CG ANGL. DEV. = -12.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 57 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE L 1G -118.19 -131.30 REMARK 500 GLU L 1C -80.66 -74.55 REMARK 500 ALA L 1B -53.93 -176.49 REMARK 500 PHE L 7 -88.17 -124.67 REMARK 500 ASP L 14L 134.38 67.88 REMARK 500 ALA H 44 -177.80 -176.59 REMARK 500 ASN H 60G 79.28 -156.92 REMARK 500 ARG H 77A -69.48 -17.62 REMARK 500 SER H 115 -170.83 -170.19 REMARK 500 PHE H 245 38.11 -140.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG H 233 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LYS L 14A 22.4 L L OUTSIDE RANGE REMARK 500 ARG H 77A 22.2 L L OUTSIDE RANGE REMARK 500 ASN H 205 24.7 L L OUTSIDE RANGE REMARK 500 SER H 214 24.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH I 541 DISTANCE = 18.29 ANGSTROMS REMARK 525 HOH H 402 DISTANCE = 14.51 ANGSTROMS REMARK 525 HOH I 558 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH I 671 DISTANCE = 12.67 ANGSTROMS REMARK 525 HOH I 791 DISTANCE = 5.72 ANGSTROMS REMARK 525 HOH I 832 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH L 557 DISTANCE = 10.54 ANGSTROMS REMARK 525 HOH I 857 DISTANCE = 7.73 ANGSTROMS REMARK 525 HOH L 634 DISTANCE = 12.01 ANGSTROMS REMARK 525 HOH L 641 DISTANCE = 13.54 ANGSTROMS REMARK 525 HOH I 883 DISTANCE = 10.66 ANGSTROMS REMARK 525 HOH I 892 DISTANCE = 8.86 ANGSTROMS REMARK 525 HOH L 695 DISTANCE = 5.50 ANGSTROMS REMARK 525 HOH L 725 DISTANCE = 5.45 ANGSTROMS REMARK 525 HOH L 757 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH L 826 DISTANCE = 10.95 ANGSTROMS REMARK 525 HOH L 828 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH H 533 DISTANCE = 7.83 ANGSTROMS REMARK 525 HOH L 867 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH L 870 DISTANCE = 15.40 ANGSTROMS REMARK 525 HOH L 872 DISTANCE = 10.37 ANGSTROMS REMARK 525 HOH H 551 DISTANCE = 8.18 ANGSTROMS REMARK 525 HOH H 604 DISTANCE = 8.87 ANGSTROMS REMARK 525 HOH H 616 DISTANCE = 9.29 ANGSTROMS REMARK 525 HOH H 651 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH H 654 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH H 673 DISTANCE = 8.28 ANGSTROMS REMARK 525 HOH H 679 DISTANCE = 7.59 ANGSTROMS REMARK 525 HOH H 684 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH H 686 DISTANCE = 5.49 ANGSTROMS REMARK 525 HOH H 724 DISTANCE = 29.84 ANGSTROMS REMARK 525 HOH H 733 DISTANCE = 7.67 ANGSTROMS REMARK 525 HOH H 777 DISTANCE = 5.76 ANGSTROMS REMARK 525 HOH H 795 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH H 801 DISTANCE = 28.14 ANGSTROMS REMARK 525 HOH H 802 DISTANCE = 27.00 ANGSTROMS REMARK 525 HOH H 834 DISTANCE = 8.98 ANGSTROMS REMARK 525 HOH H 847 DISTANCE = 8.93 ANGSTROMS REMARK 525 HOH H 860 DISTANCE = 10.50 ANGSTROMS REMARK 525 HOH H 880 DISTANCE = 12.47 ANGSTROMS REMARK 525 HOH H 893 DISTANCE = 7.52 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE HIRUGEN RESIDUE NUMBERING CORRESPONDS TO THE C-TERMINAL REMARK 999 RESIDUES OF HIRUDIN. DBREF 1HGT L 1 15 UNP P00734 THRB_HUMAN 328 363 DBREF 1HGT H 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 1HGT I 53 64 UNP P09945 ITH3_HIRME 55 64 SEQADV 1HGT GLU I 54 UNP P09945 GLY 61 CONFLICT SEQRES 1 L 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 L 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 L 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 H 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 H 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 H 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 H 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 H 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 H 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 H 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 H 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 H 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 H 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 I 12 ASN GLU ASP PHE GLU GLU ILE PRO GLU GLU TYS LEU MODRES 1HGT TYS I 63 TYR O-SULFO-L-TYROSINE HET TYS I 63 16 HETNAM TYS O-SULFO-L-TYROSINE FORMUL 3 TYS C9 H11 N O6 S FORMUL 4 HOH *243(H2 O) HELIX 1 1 PHE L 7 SER L 11 5 5 HELIX 2 2 THR L 14B TYR L 14J 1 9 HELIX 3 3 ALA H 55 LEU H 59 1 5 HELIX 4 4 PRO H 60B ASP H 60E 5 4 HELIX 5 5 ASP H 125 LEU H 130 1 9 HELIX 6 6 GLU H 164 SER H 171 1 8 HELIX 7 7 LYS H 185 GLY H 186C 5 5 HELIX 8 8 VAL H 231 GLY H 246 1 16 SHEET 1 A 7 GLN H 30 ARG H 35 0 SHEET 2 A 7 GLU H 39 LEU H 46 -1 O GLU H 39 N ARG H 35 SHEET 3 A 7 TRP H 51 THR H 54 -1 N LEU H 53 O SER H 45 SHEET 4 A 7 ALA H 104 LEU H 108 -1 O ALA H 104 N THR H 54 SHEET 5 A 7 LYS H 81 ILE H 90 -1 N GLU H 86 O LYS H 107 SHEET 6 A 7 LEU H 64 ILE H 68 -1 O LEU H 64 N LEU H 85 SHEET 7 A 7 GLN H 30 ARG H 35 -1 O MET H 32 N ARG H 67 SSBOND 1 CYS L 1 CYS H 122 1555 1555 2.02 SSBOND 2 CYS H 42 CYS H 58 1555 1555 2.10 SSBOND 3 CYS H 168 CYS H 182 1555 1555 2.05 SSBOND 4 CYS H 191 CYS H 220 1555 1555 2.12 LINK C GLU I 62 N TYS I 63 1555 1555 1.32 LINK C TYS I 63 N LEU I 64 1555 1555 1.33 CISPEP 1 SER H 36A PRO H 37 0 -4.16 SITE 1 CAT 3 HIS H 57 ASP H 102 SER H 195 CRYST1 70.800 71.800 72.600 90.00 100.90 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.192570 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.018373 0.00000 SCALE1 0.014124 0.000000 0.002720 0.00000 SCALE2 0.000000 0.013928 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014027 0.00000 MASTER 462 2 1 8 7 0 1 6 0 0 0 24 END