HEADER TRANSCRIPTION/DNA 22-JAN-02 1GTW TITLE CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A TITLE 2 DNA FRAGMENT FROM THE TOM-1A PROMOTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAAT/ENHANCER BINDING PROTEIN BETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BZIP DOMAIN, RESIDUES 259-336; COMPND 5 SYNONYM: C/EBP BETA, LIVER ACTIVATOR PROTEIN, LAP, COMPND 6 LIVER-ENRICHED INHIBITORY PROTEIN, LIP, NUCLEAR FACTOR NF-IL6, COMPND 7 TRANSCRIPTION FACTOR 5, TCF-5; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 5'-D(*AP*AP*TP*GP*TP*GP*GP*CP*GP*CP* COMPND 11 AP*AP*TP*CP*CP*T)-3'; COMPND 12 CHAIN: C; COMPND 13 OTHER_DETAILS: TOM-1A PROMOTER; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* COMPND 16 CP*CP*AP*CP*AP*T)-3'; COMPND 17 CHAIN: D; COMPND 18 OTHER_DETAILS: TOM-1A PROMOTER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAR2156; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES KEYWDS TRANSCRIPTION/DNA, PROTEIN-DNA COMPLEX, TRANSCRIPTION KEYWDS 2 FACTOR, C/EBP, HYPOTHETICAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.H.TAHIROV,K.OGATA REVDAT 3 22-JAN-14 1GTW 1 TITLE COMPND KEYWDS REMARK REVDAT 3 2 VERSN DBREF FORMUL REVDAT 2 24-FEB-09 1GTW 1 VERSN REVDAT 1 06-FEB-04 1GTW 0 JRNL AUTH T.H.TAHIROV,T.INOUE-BUNGO,K.SATO,M.SASAKI,K.OGATA JRNL TITL STRUCTURAL BASIS FOR FLEXIBLE BASE RECOGNITION BY JRNL TITL 2 C/EBPBETA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.H.TAHIROV,K.SATO,E.ICHIKAWA-IWATA,M.SASAKI, REMARK 1 AUTH 2 T.INOUE-BUNGO,M.SHIINA,K.KIMURA,S.TAKATA, REMARK 1 AUTH 3 A.FUJIKAWA,H.MORII,T.KUMASAKA,M.YAMAMOTO,S.ISHII, REMARK 1 AUTH 4 K.OGATA REMARK 1 TITL MECHANISM OF C-MYB-C/EBPBETA COOPERATION FROM REMARK 1 TITL 2 SEPARATED SITES ON A PROMOTER REMARK 1 REF CELL (CAMBRIDGE,MASS.) V. 108 57 2002 REMARK 1 REFN ISSN 0092-8674 REMARK 1 PMID 11792321 REMARK 1 DOI 10.1016/S0092-8674(01)00636-5 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.H.TAHIROV,T.INOUE-BUNGO,M.SASAKI,A.FUJIKAWA, REMARK 1 AUTH 2 K.KIMURA,K.SATO,S.ADACHI,K.KAMIYAOGATA REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF REMARK 1 TITL 2 THE C/EBPBETA C-TERMINAL REGION IN COMPLEX WITH REMARK 1 TITL 3 DNA REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 57 854 2001 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11375506 REMARK 1 DOI 10.1107/S0907444901003912 REMARK 1 REFERENCE 3 REMARK 1 AUTH T.H.TAHIROV,T.INOUE-BUNGO,H.MORII,A.FUJIKAWA, REMARK 1 AUTH 2 M.SASAKI,K.KIMURA,M.SHIINA,K.SATO,T.KUMASAKA, REMARK 1 AUTH 3 M.YAMAMOTO,S.ISHII,K.OGATA REMARK 1 TITL STRUCTURAL ANALYSES OF DNA RECOGNITION BY THE REMARK 1 TITL 2 AML1/ RUNX-1 RUNT DOMAIN AND ITS ALLOSTERIC REMARK 1 TITL 3 CONTROL BY CBFBETA REMARK 1 REF CELL (CAMBRIDGE,MASS.) V. 104 755 2001 REMARK 1 REFN ISSN 0092-8674 REMARK 1 PMID 11257229 REMARK 1 DOI 10.1016/S0092-8674(01)00271-9 REMARK 1 REFERENCE 4 REMARK 1 AUTH T.H.TAHIROV,T.INOUE,M.SASAKI,M.SHIINA,K.KIMURA, REMARK 1 AUTH 2 K.SATO,T.KUMASAKA,M.YAMAMOTO,N.KAMIYA,K.OGATA REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSES OF REMARK 1 TITL 2 QUATERNARY, TERNARY AND BINARY PROTEIN-DNA REMARK 1 TITL 3 COMPLEXES WITH INVOLVEMENT OF AML1/RUNX-1/CBFALPHA REMARK 1 TITL 4 RUNT DOMAIN, CBFBETA AND THE C/EBPBETA BZIP REGION REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 57 850 2001 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11375505 REMARK 1 DOI 10.1107/S0907444901003900 REMARK 1 REFERENCE 5 REMARK 1 AUTH T.H.TAHIROV,T.INOUE,M.SASAKI,M.SHIINA,K.KIMURA, REMARK 1 AUTH 2 K.SATO,T.KUMASAKA,M.YAMAMOTO,N.KAMIYA,K.OGATA REMARK 1 TITL CRYSTALS OF TERNARY PROTEIN-DNA COMPLEXES COMPOSED REMARK 1 TITL 2 OF DNA-BINDING DOMAINS C-MYB OR V-MYB, C/EBPALPHA REMARK 1 TITL 3 OR C/EBPBETA AND TOM-1A PROMOTER FRAGMENT REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 57 1655 2001 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11679735 REMARK 1 DOI 10.1107/S0907444901011982 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 327560.56 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 35717 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1809 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.9 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5402 REMARK 3 BIN R VALUE (WORKING SET) : 0.378 REMARK 3 BIN FREE R VALUE : 0.432 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 282 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1129 REMARK 3 NUCLEIC ACID ATOMS : 650 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.95 REMARK 3 B22 (A**2) : -5.16 REMARK 3 B33 (A**2) : -2.79 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 20.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.44 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : 1.0 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 15.7 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.13 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.97 ; 1.50 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.68 ; 2.00 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.94 ; 2.00 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 9.23 ; 2.50 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.348766 REMARK 3 BSOL : 25.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GTW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JAN-02. REMARK 100 THE PDBE ID CODE IS EBI-9253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-98 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.6 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE RAXIS IV REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44759 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 4.008 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0506 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.43 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.343 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1H8A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.0 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM CHLORIDE, REMARK 280 0.1 M MAGNESIUM ACETATE, 10.0% W/V PEG 8000, REMARK 280 0.05 M SODIUM CACODYLATE CACODYLATE BUFFER PH 6.5, REMARK 280 PROTEIN-DNA COMPLEX SOLUTION CONTAINS 0.01 M DTT AND REMARK 280 0.005 M NAN3, PROTEIN:DNA RATIO IS 1:1.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.17450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.17450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.46900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.26650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.46900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.26650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.17450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.46900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.26650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.17450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.46900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.26650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK 300 DETAILS: DIMER OF TETRAMER CONTAINING TWO PROTEIN REMARK 300 CHAINS AND TWO DNA CHAINS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 112.53300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 148.69800 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.000000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2045 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 259 REMARK 465 LYS A 260 REMARK 465 SER A 261 REMARK 465 LYS A 262 REMARK 465 ALA A 263 REMARK 465 LYS A 264 REMARK 465 LYS A 265 REMARK 465 THR A 266 REMARK 465 VAL A 267 REMARK 465 LEU A 334 REMARK 465 PRO A 335 REMARK 465 GLU A 336 REMARK 465 VAL B 259 REMARK 465 LYS B 260 REMARK 465 SER B 261 REMARK 465 LYS B 262 REMARK 465 ALA B 263 REMARK 465 LYS B 264 REMARK 465 LYS B 265 REMARK 465 THR B 266 REMARK 465 VAL B 267 REMARK 465 GLU B 336 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 333 CA C O CB CG CD OE1 NE2 REMARK 470 PRO B 335 CA C O CB CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG D 103 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG D 110 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 271 156.88 -47.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GU4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF C/EBPBETA BZIP REMARK 900 DIMERIC BOUND TO A HIGH AFFINITY DNA FRAGMENT REMARK 900 RELATED ID: 1GU5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF C/EBPBETA BZIP REMARK 900 DIMERIC BOUND TO A HIGH AFFINITY REMARK 900 DNA FRAGMENT FROM THE MIM-1 PROMOTER REMARK 900 RELATED ID: 1H88 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA REMARK 900 COMPLEX1 REMARK 900 RELATED ID: 1H89 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA REMARK 900 COMPLEX2 REMARK 900 RELATED ID: 1H8A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA REMARK 900 COMPLEX3 REMARK 900 RELATED ID: 1HJB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA REMARK 900 RUNT DOMAIN AND C/EBPBETA BZIP DIMERIC REMARK 900 BOUND TO A DNA FRAGMENT FROM THE CSF-1R REMARK 900 PROMOTER DBREF 1GTW A 259 336 UNP P17676 CEBPB_HUMAN 259 336 DBREF 1GTW B 259 336 UNP P17676 CEBPB_HUMAN 259 336 DBREF 1GTW C 1 16 PDB 1GTW 1GTW 1 16 DBREF 1GTW D 101 116 PDB 1GTW 1GTW 101 116 SEQRES 1 C 16 DA DA DT DG DT DG DG DC DG DC DA DA DT SEQRES 2 C 16 DC DC DT SEQRES 1 D 16 DT DA DG DG DA DT DT DG DC DG DC DC DA SEQRES 2 D 16 DC DA DT SEQRES 1 A 78 VAL LYS SER LYS ALA LYS LYS THR VAL ASP LYS HIS SER SEQRES 2 A 78 ASP GLU TYR LYS ILE ARG ARG GLU ARG ASN ASN ILE ALA SEQRES 3 A 78 VAL ARG LYS SER ARG ASP LYS ALA LYS MET ARG ASN LEU SEQRES 4 A 78 GLU THR GLN HIS LYS VAL LEU GLU LEU THR ALA GLU ASN SEQRES 5 A 78 GLU ARG LEU GLN LYS LYS VAL GLU GLN LEU SER ARG GLU SEQRES 6 A 78 LEU SER THR LEU ARG ASN LEU PHE LYS GLN LEU PRO GLU SEQRES 1 B 78 VAL LYS SER LYS ALA LYS LYS THR VAL ASP LYS HIS SER SEQRES 2 B 78 ASP GLU TYR LYS ILE ARG ARG GLU ARG ASN ASN ILE ALA SEQRES 3 B 78 VAL ARG LYS SER ARG ASP LYS ALA LYS MET ARG ASN LEU SEQRES 4 B 78 GLU THR GLN HIS LYS VAL LEU GLU LEU THR ALA GLU ASN SEQRES 5 B 78 GLU ARG LEU GLN LYS LYS VAL GLU GLN LEU SER ARG GLU SEQRES 6 B 78 LEU SER THR LEU ARG ASN LEU PHE LYS GLN LEU PRO GLU FORMUL 5 HOH *316(H2 O) HELIX 1 1 SER A 271 ASN A 329 1 59 HELIX 2 2 SER B 271 GLN B 333 1 63 CRYST1 100.938 112.533 74.349 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009907 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013450 0.00000 MASTER 415 0 0 2 0 0 0 6 0 0 0 16 END