HEADER COMPLEX (DNA-BINDING PROTEIN/DNA) 17-NOV-94 1GPV TITLE ELECTROSTATIC POTENTIAL DISTRIBUTION OF THE GENE V PROTEIN TITLE 2 FROM FF PHAGE FACILITATES COOPERATIVE DNA BINDING: A MODEL TITLE 3 OF THE GVP-SSDNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(P*AP*AP*AP*A)-3'); COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GENE V PROTEIN; COMPND 7 CHAIN: A, B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: BACTERIOPHAGE F1; SOURCE 5 GENE: POTENTIAL KEYWDS COMPLEX (DNA-BINDING PROTEIN/DNA) EXPDTA THEORETICAL MODEL AUTHOR Y.GUAN,H.ZHANG,A.H.-J.WANG REVDAT 2 08-MAR-95 1GPV 1 REMARK REVDAT 1 07-FEB-95 1GPV 0 JRNL AUTH Y.GUAN,H.ZHANG,A.H.WANG JRNL TITL ELECTROSTATIC POTENTIAL DISTRIBUTION OF THE GENE V JRNL TITL 2 PROTEIN FROM FF PHAGE FACILITATES COOPERATIVE DNA JRNL TITL 3 BINDING: A MODEL OF THE GVP-SSDNA COMPLEX. JRNL REF PROTEIN SCI. V. 4 187 1995 JRNL REFN ASTM PRCIEI US ISSN 0961-8368 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.GUAN,H.ZHANG,R.N.H.KONINGS,C.W.HILBERS, REMARK 1 AUTH 2 T.C.TERWILLIGER,A.H.-J.WANG REMARK 1 TITL CRYSTAL STRUCTURES OF Y41H AND Y41F MUTANTS OF REMARK 1 TITL 2 GENE V PROTEIN FROM FF PHAGE SUGGEST POSSIBLE REMARK 1 TITL 3 PROTEIN-PROTEIN INTERACTIONS IN THE GVP-SSDNA REMARK 1 TITL 4 COMPLEX REMARK 1 REF BIOCHEMISTRY V. 33 7768 1994 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.M.SKINNER,H.ZHANG,D.H.LESCHNITZER,Y.GUAN, REMARK 1 AUTH 2 H.BELLAMY,R.M.SWEET,C.W.GRAY,R.N.H.KONINGS, REMARK 1 AUTH 3 A.H.-J.WANG,T.C.TERWILLIGER REMARK 1 TITL STRUCTURE OF THE GENE V PROTEIN OF BACTERIOPHAGE REMARK 1 TITL 2 F1 DETERMINED BY MULTIWAVELENGTH X-RAY DIFFRACTION REMARK 1 TITL 3 ON THE SELENOMETHIONYL PROTEIN REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 91 2071 1994 REMARK 1 REFN ASTM PNASA6 US ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GPV COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 5 REMARK 5 MODELING BASED ON THE CRYSTAL STRUCTURES OF THE WILD-TYPE, REMARK 5 Y41H AND Y41F MUTANT GENE V PROTEINS, AS WELL AS ELECTRON REMARK 5 MICROSCOPIC DATA, ETC. REMARK 6 REMARK 6 PARAMETERS OF THE HELICAL GVP-SSDNA COMPLEX MODEL: REMARK 6 CHARACTER: LEFT-HANDED HELIX WITH 8 GVP DIMERS PER REMARK 6 HELICAL TURN. PITCH: ~90 A; OUTER DIAMETER: ~80 A. REMARK 7 REMARK 7 CORRECTION. INCLUDE TITLE FOR REFERENCE 2. 08-MAR-95. REMARK 105 REMARK 105 THE PROTEIN DATA BANK HAS ADOPTED THE SACCHARIDE CHEMISTS REMARK 105 NOMENCLATURE FOR ATOMS OF THE DEOXYRIBOSE/RIBOSE MOIETY REMARK 105 RATHER THAN THAT OF THE NUCLEOSIDE CHEMISTS. THE RING REMARK 105 OXYGEN ATOM IS LABELLED O4* INSTEAD OF O1*. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 21 -99.73 41.43 REMARK 500 ARG B 21 -99.73 41.43 DBREF 1GPV A 1 87 UNP P03669 VHED_BPFD 1 87 DBREF 1GPV B 1 87 UNP P03669 VHED_BPFD 1 87 SEQRES 1 C 4 A A A A SEQRES 1 D 4 A A A A SEQRES 1 A 87 MET ILE LYS VAL GLU ILE LYS PRO SER GLN ALA GLN PHE SEQRES 2 A 87 THR THR ARG SER GLY VAL SER ARG GLN GLY LYS PRO TYR SEQRES 3 A 87 SER LEU ASN GLU GLN LEU CYS TYR VAL ASP LEU GLY ASN SEQRES 4 A 87 GLU TYR PRO VAL LEU VAL LYS ILE THR LEU ASP GLU GLY SEQRES 5 A 87 GLN PRO ALA TYR ALA PRO GLY LEU TYR THR VAL HIS LEU SEQRES 6 A 87 SER SER PHE LYS VAL GLY GLN PHE GLY SER LEU MET ILE SEQRES 7 A 87 ASP ARG LEU ARG LEU VAL PRO ALA LYS SEQRES 1 B 87 MET ILE LYS VAL GLU ILE LYS PRO SER GLN ALA GLN PHE SEQRES 2 B 87 THR THR ARG SER GLY VAL SER ARG GLN GLY LYS PRO TYR SEQRES 3 B 87 SER LEU ASN GLU GLN LEU CYS TYR VAL ASP LEU GLY ASN SEQRES 4 B 87 GLU TYR PRO VAL LEU VAL LYS ILE THR LEU ASP GLU GLY SEQRES 5 B 87 GLN PRO ALA TYR ALA PRO GLY LEU TYR THR VAL HIS LEU SEQRES 6 B 87 SER SER PHE LYS VAL GLY GLN PHE GLY SER LEU MET ILE SEQRES 7 B 87 ASP ARG LEU ARG LEU VAL PRO ALA LYS HELIX 1 AH1 LYS A 7 ALA A 11 5 5 HELIX 2 AH2 LEU A 65 SER A 67 5 3 HELIX 3 BH1 LYS B 7 ALA B 11 5 5 HELIX 4 BH2 LEU B 65 SER B 67 5 3 SHEET 1 AH1 5 ARG A 80 ALA A 86 0 SHEET 2 AH1 5 LEU A 60 HIS A 64 -1 SHEET 3 AH1 5 ILE A 2 ILE A 6 -1 SHEET 4 AH1 5 LYS A 24 ASP A 36 -1 SHEET 5 AH1 5 PRO A 42 LEU A 49 -1 SHEET 1 AH2 2 GLN A 12 SER A 20 0 SHEET 2 AH2 2 LYS A 24 ASP A 36 -1 SHEET 1 AH3 2 PHE A 68 GLY A 71 0 SHEET 2 AH3 2 SER A 75 ILE A 78 -1 SHEET 1 BH1 5 ARG B 80 ALA B 86 0 SHEET 2 BH1 5 LEU B 60 HIS B 64 -1 SHEET 3 BH1 5 ILE B 2 ILE B 6 -1 SHEET 4 BH1 5 LYS B 24 ASP B 36 -1 SHEET 5 BH1 5 PRO B 42 LEU B 49 -1 SHEET 1 BH2 2 GLN B 12 SER B 20 0 SHEET 2 BH2 2 LYS B 24 ASP B 36 -1 SHEET 1 BH3 2 PHE B 68 GLY B 71 0 SHEET 2 BH3 2 SER B 75 ILE B 78 -1 TURN 1 T1 SER A 20 GLY A 23 TYPE I TURN 2 T2 ASP A 50 GLN A 53 TYPE II TURN 3 T3 GLY A 71 GLY A 74 TYPE I CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 69 0 0 4 18 3 0 6 0 0 0 16 END