HEADER SIGNALING PROTEIN 27-OCT-00 1G4G TITLE NMR STRUCTURE OF THE FIFTH DOMAIN OF HUMAN BETA2- TITLE 2 GLYCOPROTEIN I COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA2-GLYCOPROTEIN I; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS SHORT CONSENSUS REPEAT, SUSHI-DOMAIN, SIGNALING PROTEIN EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR M.HOSHINO,Y.HAGIHARA,I.NISHII,T.YAMAZAKI,H.KATO,Y.GOTO REVDAT 3 24-FEB-09 1G4G 1 VERSN REVDAT 2 28-MAR-01 1G4G 1 JRNL REVDAT 1 15-NOV-00 1G4G 0 JRNL AUTH M.HOSHINO,Y.HAGIHARA,I.NISHII,T.YAMAZAKI,H.KATO, JRNL AUTH 2 Y.GOTO JRNL TITL IDENTIFICATION OF THE PHOSPHOLIPID-BINDING SITE OF JRNL TITL 2 HUMAN BETA(2)-GLYCOPROTEIN I DOMAIN V BY JRNL TITL 3 HETERONUCLEAR MAGNETIC RESONANCE. JRNL REF J.MOL.BIOL. V. 304 927 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 11124037 JRNL DOI 10.1006/JMBI.2000.4243 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.841 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 1402 RESTRAINTS, 1288 ARE NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 88 DIHEDRAL ANGLE RESTRAINTS, 26 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS REMARK 4 REMARK 4 1G4G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-00. REMARK 100 THE RCSB ID CODE IS RCSB012220. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.12 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM BETA2-GLYCOPROTEIN I REMARK 210 DOMAIN V U-15N; 20MM NA- REMARK 210 PHOSPHATE BUFFER, PH 6.0; 90% REMARK 210 H2O, 10% D2O; 1MM BETA2- REMARK 210 GLYCOPROTEIN I DOMAIN V U-15N, REMARK 210 13C; 20MM NA-PHOSPHATE BUFFER, REMARK 210 PD 6.0; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, HNCO- REMARK 210 TROSY, HMQC-J, HNHB, HN(CO)HB, REMARK 210 N15-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX, DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.841 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 4 -178.47 -54.67 REMARK 500 CYS A 5 -145.10 -101.78 REMARK 500 LEU A 7 100.65 -39.65 REMARK 500 LYS A 11 43.13 -148.21 REMARK 500 ASN A 29 51.79 -100.24 REMARK 500 ASP A 58 97.33 -53.60 REMARK 500 PHE A 67 172.65 -55.10 REMARK 500 HIS A 70 -35.87 -160.12 REMARK 500 SER A 71 95.53 46.44 REMARK 500 SER A 72 -164.08 -55.34 REMARK 500 LEU A 73 71.13 57.40 REMARK 500 PHE A 75 -159.58 -106.34 REMARK 500 TRP A 76 94.18 -60.20 REMARK 500 LYS A 77 108.41 -178.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 20 0.15 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G4F RELATED DB: PDB REMARK 900 ENSEMBLE OF 20 STRUCTURES DBREF 1G4G A 1 86 UNP P02749 APOH_HUMAN 260 345 SEQADV 1G4G THR A 1 UNP P02749 CYS 260 CONFLICT SEQADV 1G4G LEU A 7 UNP P02749 VAL 266 VARIANT SEQRES 1 A 86 THR LYS ALA SER CYS LYS LEU PRO VAL LYS LYS ALA THR SEQRES 2 A 86 VAL VAL TYR GLN GLY GLU ARG VAL LYS ILE GLN GLU LYS SEQRES 3 A 86 PHE LYS ASN GLY MET LEU HIS GLY ASP LYS VAL SER PHE SEQRES 4 A 86 PHE CYS LYS ASN LYS GLU LYS LYS CYS SER TYR THR GLU SEQRES 5 A 86 ASP ALA GLN CYS ILE ASP GLY THR ILE GLU VAL PRO LYS SEQRES 6 A 86 CYS PHE LYS GLU HIS SER SER LEU ALA PHE TRP LYS THR SEQRES 7 A 86 ASP ALA SER ASP VAL LYS PRO CYS HELIX 1 1 ILE A 23 PHE A 27 1 5 HELIX 2 2 ASP A 79 VAL A 83 5 5 SHEET 1 A 2 THR A 13 VAL A 15 0 SHEET 2 A 2 ARG A 20 LYS A 22 -1 N VAL A 21 O VAL A 14 SHEET 1 B 3 LYS A 36 ASN A 43 0 SHEET 2 B 3 CYS A 48 ILE A 57 -1 O CYS A 48 N ASN A 43 SHEET 3 B 3 THR A 60 ILE A 61 -1 O THR A 60 N ILE A 57 SSBOND 1 CYS A 5 CYS A 56 1555 1555 2.02 SSBOND 2 CYS A 41 CYS A 66 1555 1555 2.02 SSBOND 3 CYS A 48 CYS A 86 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 108 0 0 2 5 0 0 6 0 0 0 7 END