HEADER HYDROLASE 24-OCT-00 1G3K TITLE CRYSTAL STRUCTURE OF THE H. INFLUENZAE PROTEASE HSLV AT 1.9 A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT PROTEASE HSLV; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.4.99.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PET KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.SOUSA,D.B.MCKAY REVDAT 3 13-JUL-11 1G3K 1 VERSN REVDAT 2 24-FEB-09 1G3K 1 VERSN REVDAT 1 22-NOV-00 1G3K 0 JRNL AUTH M.C.SOUSA,C.B.TRAME,H.TSURUTA,S.M.WILBANKS,V.S.REDDY, JRNL AUTH 2 D.B.MCKAY JRNL TITL CRYSTAL AND SOLUTION STRUCTURES OF AN HSLUV JRNL TITL 2 PROTEASE-CHAPERONE COMPLEX. JRNL REF CELL(CAMBRIDGE,MASS.) V. 103 633 2000 JRNL REFN ISSN 0092-8674 JRNL PMID 11106733 JRNL DOI 10.1016/S0092-8674(00)00166-5 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3798393.720 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4870 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7120 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 847 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3837 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.84000 REMARK 3 B22 (A**2) : -3.77000 REMARK 3 B33 (A**2) : -2.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.89 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 38.17 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G3K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-00. REMARK 100 THE RCSB ID CODE IS RCSB012189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48317 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.17900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: E. COLI HSLV AT 3.8A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, PEG 400, HCL TRIS, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.50900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.89950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.08950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.50900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.89950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.08950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.50900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.89950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.08950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.50900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.89950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.08950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DODECAMER WHICH CAN BE REMARK 300 CONSTRUCTED AS FOLLOWS: 1) TAKE CHAINS A,B AND C, APPLY SYMM OP X,- REMARK 300 Y,-Z, AND TRANSLATE 0 0 1 2) FINALLY TAKE ALL SIX CHAINS AND APPLY REMARK 300 SYMM OP -X,-Y,Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 29490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 71480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -257.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 126.17900 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 126.17900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 174 REMARK 465 ASN B 174 REMARK 465 ASN C 174 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 GLU A 65 CG CD OE1 OE2 REMARK 470 MET A 66 CG SD CE REMARK 470 GLN A 68 CG CD OE1 NE2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 ARG B 32 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 35 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 68 CG CD OE1 NE2 REMARK 470 GLU B 92 CG CD OE1 OE2 REMARK 470 GLU B 100 CG CD OE1 OE2 REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 GLU B 117 CG CD OE1 OE2 REMARK 470 GLU B 139 CG CD OE1 OE2 REMARK 470 GLU B 142 CG CD OE1 OE2 REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 MET C 27 CG SD CE REMARK 470 ASN C 39 CG OD1 REMARK 470 ARG C 62 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 73 CG CD CE NZ REMARK 470 ARG C 86 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 92 CG CD OE1 OE2 REMARK 470 GLU C 100 CG CD OE1 OE2 REMARK 470 GLU C 142 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 2244 O HOH C 2244 2555 1.49 REMARK 500 O HOH B 1264 O HOH B 1265 3556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 104 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 ARG C 135 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 111 -139.23 58.33 REMARK 500 ASN A 164 -168.48 -106.64 REMARK 500 ASN B 164 -168.00 -109.41 REMARK 500 ASN C 164 -165.49 -105.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR C 129 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 HOH 201-270 IS ASSOCIATED WITH CHAIN A. REMARK 600 HOH 1201-1269 IS ASSOCIATED WITH CHAIN B. REMARK 600 HOH 2201-2260 IS ASSOCIATED WITH CHAIN C. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 500 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 160 O REMARK 620 2 GLY A 157 O 99.6 REMARK 620 3 THR A 163 O 89.7 93.7 REMARK 620 4 HOH A 237 O 172.0 84.1 97.1 REMARK 620 5 HOH A 238 O 88.0 89.9 176.0 84.9 REMARK 620 6 HOH A 236 O 103.8 155.9 80.8 73.4 96.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 500 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 163 O REMARK 620 2 HOH B1234 O 80.1 REMARK 620 3 HOH B1235 O 171.6 94.0 REMARK 620 4 GLY B 157 O 96.7 155.4 91.1 REMARK 620 5 HOH B1236 O 101.1 77.7 83.3 79.1 REMARK 620 6 CYS B 160 O 87.1 102.0 88.3 102.1 171.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 500 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C2238 O REMARK 620 2 HOH C2239 O 90.9 REMARK 620 3 GLY C 157 O 97.3 150.5 REMARK 620 4 THR C 163 O 167.4 76.5 94.0 REMARK 620 5 CYS C 160 O 93.3 107.2 100.6 90.1 REMARK 620 6 HOH C2254 O 80.1 75.7 78.0 97.0 172.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G3I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PROTEASE-CHAPERONE COMPLEX HSLUV REMARK 900 FROM H. INFLUENZAE AT 3.4 A RESOLUTION REMARK 900 RELATED ID: 1G41 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HSLU HAEMOPHILUS INFLUENZAE DBREF 1G3K A 1 174 UNP P43772 HSLV_HAEIN 1 174 DBREF 1G3K B 1 174 UNP P43772 HSLV_HAEIN 1 174 DBREF 1G3K C 1 174 UNP P43772 HSLV_HAEIN 1 174 SEQRES 1 A 174 THR THR ILE VAL SER VAL ARG ARG ASN GLY GLN VAL VAL SEQRES 2 A 174 VAL GLY GLY ASP GLY GLN VAL SER LEU GLY ASN THR VAL SEQRES 3 A 174 MET LYS GLY ASN ALA ARG LYS VAL ARG ARG LEU TYR ASN SEQRES 4 A 174 GLY LYS VAL LEU ALA GLY PHE ALA GLY GLY THR ALA ASP SEQRES 5 A 174 ALA PHE THR LEU PHE GLU LEU PHE GLU ARG LYS LEU GLU SEQRES 6 A 174 MET HIS GLN GLY HIS LEU LEU LYS SER ALA VAL GLU LEU SEQRES 7 A 174 ALA LYS ASP TRP ARG THR ASP ARG ALA LEU ARG LYS LEU SEQRES 8 A 174 GLU ALA MET LEU ILE VAL ALA ASP GLU LYS GLU SER LEU SEQRES 9 A 174 ILE ILE THR GLY ILE GLY ASP VAL VAL GLN PRO GLU GLU SEQRES 10 A 174 ASP GLN ILE LEU ALA ILE GLY SER GLY GLY ASN TYR ALA SEQRES 11 A 174 LEU SER ALA ALA ARG ALA LEU VAL GLU ASN THR GLU LEU SEQRES 12 A 174 SER ALA HIS GLU ILE VAL GLU LYS SER LEU ARG ILE ALA SEQRES 13 A 174 GLY ASP ILE CYS VAL PHE THR ASN THR ASN PHE THR ILE SEQRES 14 A 174 GLU GLU LEU PRO ASN SEQRES 1 B 174 THR THR ILE VAL SER VAL ARG ARG ASN GLY GLN VAL VAL SEQRES 2 B 174 VAL GLY GLY ASP GLY GLN VAL SER LEU GLY ASN THR VAL SEQRES 3 B 174 MET LYS GLY ASN ALA ARG LYS VAL ARG ARG LEU TYR ASN SEQRES 4 B 174 GLY LYS VAL LEU ALA GLY PHE ALA GLY GLY THR ALA ASP SEQRES 5 B 174 ALA PHE THR LEU PHE GLU LEU PHE GLU ARG LYS LEU GLU SEQRES 6 B 174 MET HIS GLN GLY HIS LEU LEU LYS SER ALA VAL GLU LEU SEQRES 7 B 174 ALA LYS ASP TRP ARG THR ASP ARG ALA LEU ARG LYS LEU SEQRES 8 B 174 GLU ALA MET LEU ILE VAL ALA ASP GLU LYS GLU SER LEU SEQRES 9 B 174 ILE ILE THR GLY ILE GLY ASP VAL VAL GLN PRO GLU GLU SEQRES 10 B 174 ASP GLN ILE LEU ALA ILE GLY SER GLY GLY ASN TYR ALA SEQRES 11 B 174 LEU SER ALA ALA ARG ALA LEU VAL GLU ASN THR GLU LEU SEQRES 12 B 174 SER ALA HIS GLU ILE VAL GLU LYS SER LEU ARG ILE ALA SEQRES 13 B 174 GLY ASP ILE CYS VAL PHE THR ASN THR ASN PHE THR ILE SEQRES 14 B 174 GLU GLU LEU PRO ASN SEQRES 1 C 174 THR THR ILE VAL SER VAL ARG ARG ASN GLY GLN VAL VAL SEQRES 2 C 174 VAL GLY GLY ASP GLY GLN VAL SER LEU GLY ASN THR VAL SEQRES 3 C 174 MET LYS GLY ASN ALA ARG LYS VAL ARG ARG LEU TYR ASN SEQRES 4 C 174 GLY LYS VAL LEU ALA GLY PHE ALA GLY GLY THR ALA ASP SEQRES 5 C 174 ALA PHE THR LEU PHE GLU LEU PHE GLU ARG LYS LEU GLU SEQRES 6 C 174 MET HIS GLN GLY HIS LEU LEU LYS SER ALA VAL GLU LEU SEQRES 7 C 174 ALA LYS ASP TRP ARG THR ASP ARG ALA LEU ARG LYS LEU SEQRES 8 C 174 GLU ALA MET LEU ILE VAL ALA ASP GLU LYS GLU SER LEU SEQRES 9 C 174 ILE ILE THR GLY ILE GLY ASP VAL VAL GLN PRO GLU GLU SEQRES 10 C 174 ASP GLN ILE LEU ALA ILE GLY SER GLY GLY ASN TYR ALA SEQRES 11 C 174 LEU SER ALA ALA ARG ALA LEU VAL GLU ASN THR GLU LEU SEQRES 12 C 174 SER ALA HIS GLU ILE VAL GLU LYS SER LEU ARG ILE ALA SEQRES 13 C 174 GLY ASP ILE CYS VAL PHE THR ASN THR ASN PHE THR ILE SEQRES 14 C 174 GLU GLU LEU PRO ASN HET NA A 500 1 HET NA B 500 1 HET NA C 500 1 HETNAM NA SODIUM ION FORMUL 4 NA 3(NA 1+) FORMUL 7 HOH *198(H2 O) HELIX 1 1 GLY A 49 HIS A 67 1 19 HELIX 2 2 HIS A 70 ASP A 85 1 16 HELIX 3 3 ALA A 87 LEU A 91 5 5 HELIX 4 4 GLY A 126 THR A 141 1 16 HELIX 5 5 SER A 144 CYS A 160 1 17 HELIX 6 6 GLY B 49 HIS B 67 1 19 HELIX 7 7 HIS B 70 ASP B 85 1 16 HELIX 8 8 ALA B 87 LEU B 91 5 5 HELIX 9 9 GLY B 126 THR B 141 1 16 HELIX 10 10 SER B 144 CYS B 160 1 17 HELIX 11 11 GLY C 49 HIS C 67 1 19 HELIX 12 12 HIS C 70 ASP C 85 1 16 HELIX 13 13 ALA C 87 LEU C 91 5 5 HELIX 14 14 GLY C 126 THR C 141 1 16 HELIX 15 15 SER C 144 ASP C 158 1 15 SHEET 1 A 4 ILE A 120 ILE A 123 0 SHEET 2 A 4 ILE A 3 ARG A 8 -1 O ILE A 3 N ILE A 123 SHEET 3 A 4 GLN A 11 GLY A 16 -1 O GLN A 11 N ARG A 8 SHEET 4 A 4 THR A 168 LEU A 172 -1 O THR A 168 N GLY A 16 SHEET 1 B 2 VAL A 20 LEU A 22 0 SHEET 2 B 2 THR A 25 LYS A 28 -1 O THR A 25 N LEU A 22 SHEET 1 C 5 VAL A 34 LEU A 37 0 SHEET 2 C 5 VAL A 42 ALA A 47 -1 O VAL A 42 N LEU A 37 SHEET 3 C 5 MET A 94 ALA A 98 -1 O MET A 94 N ALA A 47 SHEET 4 C 5 SER A 103 THR A 107 -1 N LEU A 104 O VAL A 97 SHEET 5 C 5 ASP A 111 VAL A 113 -1 O ASP A 111 N THR A 107 SHEET 1 D 4 ILE B 120 ILE B 123 0 SHEET 2 D 4 ILE B 3 ARG B 8 -1 N ILE B 3 O ILE B 123 SHEET 3 D 4 GLN B 11 GLY B 16 -1 O GLN B 11 N ARG B 8 SHEET 4 D 4 THR B 168 LEU B 172 -1 O THR B 168 N GLY B 16 SHEET 1 E 2 VAL B 20 LEU B 22 0 SHEET 2 E 2 THR B 25 LYS B 28 -1 O THR B 25 N LEU B 22 SHEET 1 F 5 VAL B 34 LEU B 37 0 SHEET 2 F 5 VAL B 42 ALA B 47 -1 O VAL B 42 N LEU B 37 SHEET 3 F 5 MET B 94 ALA B 98 -1 O MET B 94 N ALA B 47 SHEET 4 F 5 SER B 103 THR B 107 -1 N LEU B 104 O VAL B 97 SHEET 5 F 5 VAL B 112 VAL B 113 -1 N VAL B 113 O ILE B 105 SHEET 1 G 4 ILE C 120 ILE C 123 0 SHEET 2 G 4 ILE C 3 ARG C 8 -1 N ILE C 3 O ILE C 123 SHEET 3 G 4 GLN C 11 GLY C 16 -1 O GLN C 11 N ARG C 8 SHEET 4 G 4 THR C 168 LEU C 172 -1 N THR C 168 O GLY C 16 SHEET 1 H 2 VAL C 20 LEU C 22 0 SHEET 2 H 2 THR C 25 LYS C 28 -1 O THR C 25 N LEU C 22 SHEET 1 I 5 VAL C 34 LEU C 37 0 SHEET 2 I 5 VAL C 42 GLY C 48 -1 O VAL C 42 N LEU C 37 SHEET 3 I 5 ALA C 93 ALA C 98 -1 O MET C 94 N ALA C 47 SHEET 4 I 5 SER C 103 ILE C 106 -1 N LEU C 104 O VAL C 97 SHEET 5 I 5 VAL C 112 VAL C 113 -1 N VAL C 113 O ILE C 105 LINK NA NA A 500 O CYS A 160 1555 1555 2.28 LINK NA NA A 500 O GLY A 157 1555 1555 2.27 LINK NA NA A 500 O THR A 163 1555 1555 2.27 LINK NA NA A 500 O HOH A 237 1555 1555 2.41 LINK NA NA A 500 O HOH A 238 1555 1555 2.24 LINK NA NA A 500 O HOH A 236 1555 1555 2.51 LINK NA NA B 500 O THR B 163 1555 1555 2.24 LINK NA NA B 500 O HOH B1234 1555 1555 2.51 LINK NA NA B 500 O HOH B1235 1555 1555 2.39 LINK NA NA B 500 O GLY B 157 1555 1555 2.28 LINK NA NA B 500 O HOH B1236 1555 1555 2.57 LINK NA NA B 500 O CYS B 160 1555 1555 2.36 LINK NA NA C 500 O HOH C2238 1555 1555 2.28 LINK NA NA C 500 O HOH C2239 1555 1555 2.42 LINK NA NA C 500 O GLY C 157 1555 1555 2.28 LINK NA NA C 500 O THR C 163 1555 1555 2.22 LINK NA NA C 500 O CYS C 160 1555 1555 2.36 LINK NA NA C 500 O HOH C2254 1555 1555 2.66 CISPEP 1 LEU A 172 PRO A 173 0 -0.35 CISPEP 2 LEU B 172 PRO B 173 0 -0.20 CISPEP 3 LEU C 172 PRO C 173 0 -0.29 SITE 1 AC1 6 GLY A 157 CYS A 160 THR A 163 HOH A 236 SITE 2 AC1 6 HOH A 237 HOH A 238 SITE 1 AC2 6 GLY B 157 CYS B 160 THR B 163 HOH B1234 SITE 2 AC2 6 HOH B1235 HOH B1236 SITE 1 AC3 6 GLY C 157 CYS C 160 THR C 163 HOH C2238 SITE 2 AC3 6 HOH C2239 HOH C2254 CRYST1 79.018 121.799 126.179 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012655 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007925 0.00000 MASTER 431 0 3 15 33 0 6 6 0 0 0 42 END