HEADER TRANSCRIPTION 11-OCT-00 1G1E TITLE NMR STRUCTURE OF THE HUMAN MAD1 TRANSREPRESSION DOMAIN SID TITLE 2 IN COMPLEX WITH MAMMALIAN SIN3A PAH2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAD1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SIN3 INTERACTION DOMAIN (SID) TRANSREPRESSION COMPND 5 DOMAIN; COMPND 6 SYNONYM: MAX DIMERIZATION PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SIN3A; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: PAIRED AMPHIPATHIC HELIX 2 (PAH2 REPEAT); COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE SEQUENCE WAS SYNTHESIZED VIA SOURCE 4 AUTOMATED METHODS. THE SEQUENCE IS NATURALLY FOUND IN HOMO SOURCE 5 SAPIENS (HUMAN).; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET24 KEYWDS FOUR-HELIX BUNDLE, PROTEIN-PEPTIDE COMPLEX, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 15 MDLTYP MINIMIZED AVERAGE AUTHOR K.BRUBAKER,S.M.COWLEY,K.HUANG,R.N.EISENMAN,I.RADHAKRISHNAN REVDAT 2 24-FEB-09 1G1E 1 VERSN REVDAT 1 06-DEC-00 1G1E 0 JRNL AUTH K.BRUBAKER,S.M.COWLEY,K.HUANG,L.LOO,G.S.YOCHUM, JRNL AUTH 2 D.E.AYER,R.N.EISENMAN,I.RADHAKRISHNAN JRNL TITL SOLUTION STRUCTURE OF THE INTERACTING DOMAINS OF JRNL TITL 2 THE MAD-SIN3 COMPLEX: IMPLICATIONS FOR RECRUITMENT JRNL TITL 3 OF A CHROMATIN-MODIFYING COMPLEX. JRNL REF CELL(CAMBRIDGE,MASS.) V. 103 655 2000 JRNL REFN ISSN 0092-8674 JRNL PMID 11106735 JRNL DOI 10.1016/S0092-8674(00)00168-9 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 1612 REMARK 3 UNIQUE DISTANCE CONSTRAINTS, 198 TORSION ANGLE CONSTRAINTS AND REMARK 3 72 JHNHA COUPLING CONSTANT CONSTRAINTS. REMARK 4 REMARK 4 1G1E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-00. REMARK 100 THE RCSB ID CODE IS RCSB012112. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 20 MM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM 1:1 SID UNLABELED, REMARK 210 PAH2 U-15N; 1.6 MM 1:1 SID REMARK 210 UNLABELED, PAH2 U-15N, U-13C.; REMARK 210 1.6 MM 1:1 SID UNLABELED, PAH2 REMARK 210 U-15N,13C; 20 MM PHOSPHATE REMARK 210 BUFFER PH 6.0, 0.2% NAN3; 1.6 REMARK 210 MM 1:1 SID UNLABELED, PAH2 U- REMARK 210 15N,13C; 20 MM PHOSPHATE REMARK 210 BUFFER PH 6.0, 0.2% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 15N-SEPARATED_NOESY, HNHA, REMARK 210 2D 13C,15N-DOUBLE-HALF- REMARK 210 FILTERED NOESY, 2D 13C-DOUBLE- REMARK 210 HALF-FILTERED NOESY, 3D 13C- REMARK 210 SEPARATED_NOESY, 3D HACAHB, 2D REMARK 210 SPIN-ECHO DIFFERENCE FOR REMARK 210 JNCGAMMA, JC'CGAMMA, 3D HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 98, DYANA 1.5 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 25 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON REMARK 210 -BOND ENERGY,STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 15 REMARK 210 REMARK 210 REMARK: INTERPROTON NOES WERE ASSIGNED ITERATIVELY BUT MANUALLY REMARK 210 DURING STRUCTURE REFINEMENT. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 TYR A 18 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 8 -97.36 -7.09 REMARK 500 1 GLN B 300 85.71 57.06 REMARK 500 1 PHE B 318 39.85 -98.93 REMARK 500 1 PHE B 366 43.98 -90.38 REMARK 500 1 LYS B 367 -74.32 -51.70 REMARK 500 1 GLN B 369 49.40 -142.44 REMARK 500 1 ASP B 382 48.61 -87.73 REMARK 500 2 MET A 7 -179.82 65.37 REMARK 500 2 ASN A 8 -73.10 -84.33 REMARK 500 2 LEU B 296 89.53 65.18 REMARK 500 2 GLN B 297 154.99 72.95 REMARK 500 2 ASN B 298 152.79 67.31 REMARK 500 2 ASN B 299 -168.84 46.49 REMARK 500 2 GLN B 300 86.16 63.33 REMARK 500 2 PHE B 318 41.22 -102.24 REMARK 500 2 GLN B 321 79.26 -105.24 REMARK 500 2 PHE B 366 42.53 -88.61 REMARK 500 2 GLN B 369 52.40 -142.40 REMARK 500 2 PRO B 381 -159.66 -64.51 REMARK 500 3 ASN A 8 -53.63 -126.67 REMARK 500 3 GLN B 297 -82.76 76.54 REMARK 500 3 ASN B 298 -26.96 -150.91 REMARK 500 3 ASN B 348 33.68 -83.43 REMARK 500 3 PRO B 381 7.46 -68.81 REMARK 500 3 ASP B 382 31.61 -89.63 REMARK 500 4 ASN A 8 -127.16 -176.02 REMARK 500 4 ASN B 298 -78.46 -88.13 REMARK 500 4 THR B 350 127.56 66.89 REMARK 500 4 PHE B 366 41.81 -91.56 REMARK 500 4 LYS B 367 -71.76 -49.64 REMARK 500 4 ASN B 368 33.89 -85.19 REMARK 500 4 PRO B 381 -155.33 -56.81 REMARK 500 5 ASN A 8 -119.01 -147.83 REMARK 500 5 LEU B 296 99.39 61.68 REMARK 500 5 GLN B 321 79.34 -103.87 REMARK 500 5 ASN B 348 32.66 -83.90 REMARK 500 5 PHE B 366 -141.39 -88.40 REMARK 500 5 LYS B 367 -52.27 113.69 REMARK 500 5 GLN B 369 58.16 -142.31 REMARK 500 5 PRO B 381 19.97 -59.44 REMARK 500 5 ASP B 382 -79.96 67.51 REMARK 500 6 MET A 7 -20.26 76.21 REMARK 500 6 ASN B 298 -28.93 -149.81 REMARK 500 6 GLN B 300 137.90 68.86 REMARK 500 6 PHE B 318 38.46 -96.99 REMARK 500 6 PHE B 366 41.03 -90.53 REMARK 500 6 GLN B 369 53.38 -142.72 REMARK 500 6 PRO B 381 -156.90 -62.36 REMARK 500 7 ASN A 8 -129.95 -172.48 REMARK 500 7 GLN B 297 -170.58 53.88 REMARK 500 7 ASN B 298 179.93 63.71 REMARK 500 7 ASN B 299 -166.36 -77.67 REMARK 500 7 GLN B 300 82.41 70.61 REMARK 500 7 PHE B 318 42.46 -101.91 REMARK 500 7 GLN B 321 78.80 -107.16 REMARK 500 7 TYR B 349 -51.26 -157.47 REMARK 500 7 THR B 350 131.27 61.91 REMARK 500 7 PHE B 366 32.29 -90.33 REMARK 500 7 GLN B 369 58.95 -142.37 REMARK 500 7 PRO B 381 12.39 -66.05 REMARK 500 8 MET A 7 99.60 68.23 REMARK 500 8 ASN A 8 -124.62 -84.73 REMARK 500 8 GLN B 297 -45.64 -162.61 REMARK 500 8 ASN B 298 -73.44 71.39 REMARK 500 8 ASN B 299 -124.76 -159.09 REMARK 500 8 PRO B 301 36.29 -83.76 REMARK 500 8 PHE B 318 44.97 -100.84 REMARK 500 8 ASN B 348 -47.74 -156.59 REMARK 500 8 PHE B 366 51.43 -90.99 REMARK 500 8 LYS B 367 -75.55 -51.96 REMARK 500 8 ASN B 368 38.55 -85.13 REMARK 500 8 GLN B 369 56.43 -149.93 REMARK 500 8 PRO B 381 -159.10 -64.27 REMARK 500 9 ASN A 8 -66.35 -103.44 REMARK 500 9 GLN B 300 156.97 67.03 REMARK 500 9 PHE B 318 39.57 -99.60 REMARK 500 9 THR B 350 132.54 64.04 REMARK 500 9 PHE B 366 36.26 -94.89 REMARK 500 9 GLN B 369 48.90 -142.70 REMARK 500 9 PRO B 381 -150.53 -74.66 REMARK 500 10 LEU B 296 -52.13 -163.95 REMARK 500 10 GLN B 297 -55.68 -162.73 REMARK 500 10 ASN B 298 95.14 60.77 REMARK 500 10 PHE B 318 33.80 -99.54 REMARK 500 10 GLN B 321 75.84 -105.97 REMARK 500 10 PHE B 366 47.94 -88.62 REMARK 500 10 LYS B 367 -73.31 -50.86 REMARK 500 10 GLN B 369 50.26 -142.34 REMARK 500 10 PRO B 381 156.33 -34.85 REMARK 500 11 ASN A 8 -95.14 -171.23 REMARK 500 11 LEU B 296 93.52 62.95 REMARK 500 11 ASN B 298 -78.64 -88.07 REMARK 500 11 GLN B 300 84.51 60.77 REMARK 500 11 PHE B 318 46.35 -101.10 REMARK 500 11 GLN B 321 75.65 -119.92 REMARK 500 11 ASN B 348 34.26 -83.25 REMARK 500 11 TYR B 349 117.93 -163.23 REMARK 500 11 PHE B 366 44.25 -89.66 REMARK 500 11 GLN B 369 53.76 -142.48 REMARK 500 11 PRO B 381 -158.80 -63.03 REMARK 500 12 ILE A 9 -59.17 60.39 REMARK 500 12 ASN B 298 79.06 61.43 REMARK 500 12 PHE B 318 31.64 -95.54 REMARK 500 12 TYR B 349 -60.19 -157.27 REMARK 500 12 THR B 350 133.48 61.94 REMARK 500 12 PHE B 366 47.09 -89.20 REMARK 500 12 GLN B 369 47.50 -142.42 REMARK 500 13 ASN A 8 -51.73 -135.70 REMARK 500 13 GLN B 297 -34.25 84.87 REMARK 500 13 ASN B 298 133.12 69.54 REMARK 500 13 GLN B 300 81.10 -154.76 REMARK 500 13 PHE B 318 37.03 -99.62 REMARK 500 13 ASN B 348 -92.39 -156.67 REMARK 500 13 TYR B 349 -74.50 34.17 REMARK 500 13 THR B 350 128.48 78.72 REMARK 500 13 PHE B 366 47.84 -88.45 REMARK 500 13 GLN B 369 51.06 -142.31 REMARK 500 13 PRO B 381 -158.72 -68.83 REMARK 500 14 MET A 7 -140.87 -110.54 REMARK 500 14 TYR B 349 -65.67 -157.49 REMARK 500 14 THR B 350 134.41 64.88 REMARK 500 14 LYS B 367 -79.78 -51.75 REMARK 500 14 ASN B 368 38.81 -82.87 REMARK 500 14 GLN B 369 49.42 -149.89 REMARK 500 15 ASN A 8 -58.74 -123.42 REMARK 500 15 GLN B 297 -25.47 -163.74 REMARK 500 15 ASN B 299 77.58 38.09 REMARK 500 15 GLN B 300 167.97 47.27 REMARK 500 15 PHE B 366 48.41 -88.80 REMARK 500 15 GLN B 369 53.57 -142.46 REMARK 500 15 PRO B 381 -79.28 -76.00 REMARK 500 REMARK 500 REMARK: NULL DBREF 1G1E A 6 21 GB 4505069 NP_002348 6 21 DBREF 1G1E B 295 383 UNP Q60520 SIN3A_MOUSE 295 383 SEQRES 1 A 16 ARG MET ASN ILE GLN MET LEU LEU GLU ALA ALA ASP TYR SEQRES 2 A 16 LEU GLU ARG SEQRES 1 B 89 SER LEU GLN ASN ASN GLN PRO VAL GLU PHE ASN HIS ALA SEQRES 2 B 89 ILE ASN TYR VAL ASN LYS ILE LYS ASN ARG PHE GLN GLY SEQRES 3 B 89 GLN PRO ASP ILE TYR LYS ALA PHE LEU GLU ILE LEU HIS SEQRES 4 B 89 THR TYR GLN LYS GLU GLN ARG ASN ALA LYS GLU ALA GLY SEQRES 5 B 89 GLY ASN TYR THR PRO ALA LEU THR GLU GLN GLU VAL TYR SEQRES 6 B 89 ALA GLN VAL ALA ARG LEU PHE LYS ASN GLN GLU ASP LEU SEQRES 7 B 89 LEU SER GLU PHE GLY GLN PHE LEU PRO ASP ALA HELIX 1 1 ILE A 9 GLU A 20 1 12 HELIX 2 2 VAL B 302 ARG B 317 1 16 HELIX 3 3 PRO B 322 ALA B 345 1 24 HELIX 4 4 GLU B 355 LEU B 365 1 11 HELIX 5 5 GLU B 370 GLY B 377 1 8 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 232 0 0 5 0 0 0 6 0 0 0 9 END