HEADER CELL ADHESION 15-SEP-00 1FUL TITLE SOLUTION STRUCTURE OF AN RGD PEPTIDE ISOMER-B COMPND MOL_ID: 1; COMPND 2 MOLECULE: RGD PEPTIDE ISOMER-B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: PEPTIDE WAS CHEMICALLY SYNTHESIZED KEYWDS DOUBLE S-S BONDS, TYPE II' BETA-TURN, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR N.ASSA-MUNT,X.JIA,P.LAAKKONEN,E.RUOSLAHTI REVDAT 2 24-FEB-09 1FUL 1 VERSN REVDAT 1 16-MAY-01 1FUL 0 JRNL AUTH N.ASSA-MUNT,X.JIA,P.LAAKKONEN,E.RUOSLAHTI JRNL TITL SOLUTION STRUCTURES AND INTEGRIN BINDING JRNL TITL 2 ACTIVITIES OF AN RGD PEPTIDE WITH TWO ISOMERS. JRNL REF BIOCHEMISTRY V. 40 2373 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11327857 JRNL DOI 10.1021/BI002101F REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.RUOSLAHTI REMARK 1 TITL RGD AND OTHER RECOGNITION SEQUENCES FOR INTEGRINS. REMARK 1 REF ANNU.REV.CELL DEV.BIOL. V. 12 697 1996 REMARK 1 REFN ISSN 1081-0706 REMARK 1 DOI 10.1146/ANNUREV.CELLBIO.12.1.697 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : AXEL T. BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FUL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-00. REMARK 100 THE RCSB ID CODE IS RCSB011915. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 2.5 MG REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE REMARK 210 WITH EXPERIMENTAL NOESY REMARK 210 SPECTRUM,STRUCTURES WITH REMARK 210 ACCEPTABLE COVALENT GEOMETRY, REMARK 210 STRUCTURES WITH FAVORABLE NON- REMARK 210 BOND ENERGY,STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT REMARK 210 VIOLATIONS,STRUCTURES WITH THE REMARK 210 LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 8 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 3 -62.67 -107.04 REMARK 500 1 CYS A 4 40.95 -151.35 REMARK 500 1 ARG A 5 -42.59 -148.99 REMARK 500 1 ASP A 7 30.71 -98.23 REMARK 500 2 CYS A 4 42.00 -167.78 REMARK 500 2 ARG A 5 -38.96 -150.77 REMARK 500 2 ASP A 7 31.15 -99.98 REMARK 500 3 ASP A 3 -73.30 -106.54 REMARK 500 3 CYS A 4 38.65 -144.10 REMARK 500 3 ARG A 5 -36.33 -149.95 REMARK 500 3 ASP A 7 31.63 -99.02 REMARK 500 4 CYS A 4 39.96 -162.62 REMARK 500 4 ARG A 5 -39.12 -147.61 REMARK 500 5 ASP A 3 -73.10 -103.90 REMARK 500 5 CYS A 4 43.70 -147.23 REMARK 500 5 ARG A 5 -41.34 -150.86 REMARK 500 5 ASP A 7 30.08 -98.20 REMARK 500 6 ASP A 3 -73.22 -105.12 REMARK 500 6 CYS A 4 37.65 -146.45 REMARK 500 6 ARG A 5 -39.61 -146.49 REMARK 500 6 ASP A 7 30.91 -98.05 REMARK 500 7 ASP A 3 -62.52 -104.62 REMARK 500 7 CYS A 4 39.42 -152.63 REMARK 500 7 ARG A 5 -39.34 -149.35 REMARK 500 8 ASP A 3 -68.77 -99.10 REMARK 500 8 CYS A 4 35.94 -154.48 REMARK 500 8 ARG A 5 -37.16 -143.40 REMARK 500 9 ASP A 3 -72.00 -105.96 REMARK 500 9 CYS A 4 41.70 -148.63 REMARK 500 9 ARG A 5 -40.92 -149.67 REMARK 500 9 ASP A 7 30.11 -98.02 REMARK 500 10 ASP A 3 -73.22 -106.74 REMARK 500 10 CYS A 4 37.40 -146.29 REMARK 500 10 ARG A 5 -38.03 -148.01 REMARK 500 10 ASP A 7 31.02 -98.99 REMARK 500 11 ASP A 3 -73.04 -107.04 REMARK 500 11 CYS A 4 39.02 -145.07 REMARK 500 11 ARG A 5 -41.19 -148.04 REMARK 500 11 ASP A 7 31.43 -99.01 REMARK 500 12 ASP A 3 -72.72 -105.26 REMARK 500 12 CYS A 4 36.40 -146.19 REMARK 500 12 ARG A 5 -36.08 -147.47 REMARK 500 12 ASP A 7 31.55 -99.03 REMARK 500 13 CYS A 4 39.70 -167.22 REMARK 500 13 ARG A 5 -37.92 -148.60 REMARK 500 13 ASP A 7 30.15 -99.42 REMARK 500 14 ASP A 3 -75.93 -103.60 REMARK 500 14 CYS A 4 40.42 -147.23 REMARK 500 14 ARG A 5 -39.59 -148.05 REMARK 500 14 ASP A 7 30.18 -97.27 REMARK 500 15 ASP A 3 -75.07 -105.83 REMARK 500 15 CYS A 4 39.50 -147.07 REMARK 500 15 ARG A 5 -41.57 -146.78 REMARK 500 16 ASP A 3 -72.73 -101.53 REMARK 500 16 CYS A 4 39.51 -150.58 REMARK 500 16 ARG A 5 -38.18 -146.78 REMARK 500 17 ASP A 3 -72.00 -105.74 REMARK 500 17 CYS A 4 38.50 -146.74 REMARK 500 17 ARG A 5 -41.36 -146.19 REMARK 500 17 ASP A 7 30.22 -97.72 REMARK 500 18 ASP A 3 -65.59 -107.30 REMARK 500 18 CYS A 4 40.90 -148.04 REMARK 500 18 ARG A 5 -41.63 -149.46 REMARK 500 18 ASP A 7 31.02 -99.38 REMARK 500 19 ASP A 3 -67.70 -109.04 REMARK 500 19 CYS A 4 41.26 -147.05 REMARK 500 19 ARG A 5 -42.95 -149.66 REMARK 500 19 ASP A 7 31.25 -98.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 5 0.27 SIDE_CHAIN REMARK 500 2 ARG A 5 0.21 SIDE_CHAIN REMARK 500 3 ARG A 5 0.29 SIDE_CHAIN REMARK 500 4 ARG A 5 0.22 SIDE_CHAIN REMARK 500 5 ARG A 5 0.24 SIDE_CHAIN REMARK 500 6 ARG A 5 0.26 SIDE_CHAIN REMARK 500 7 ARG A 5 0.23 SIDE_CHAIN REMARK 500 8 ARG A 5 0.32 SIDE_CHAIN REMARK 500 9 ARG A 5 0.27 SIDE_CHAIN REMARK 500 10 ARG A 5 0.25 SIDE_CHAIN REMARK 500 11 ARG A 5 0.27 SIDE_CHAIN REMARK 500 12 ARG A 5 0.32 SIDE_CHAIN REMARK 500 13 ARG A 5 0.27 SIDE_CHAIN REMARK 500 14 ARG A 5 0.21 SIDE_CHAIN REMARK 500 15 ARG A 5 0.24 SIDE_CHAIN REMARK 500 16 ARG A 5 0.28 SIDE_CHAIN REMARK 500 17 ARG A 5 0.22 SIDE_CHAIN REMARK 500 18 ARG A 5 0.22 SIDE_CHAIN REMARK 500 19 ARG A 5 0.27 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FUV RELATED DB: PDB REMARK 900 1FUV IS THE SOLUTION STRUCTURE OF AN RGD PEPTIDE ISOMER-A DBREF 1FUL A 1 11 PDB 1FUL 1FUL 1 11 SEQRES 1 A 11 ALA CYS ASP CYS ARG GLY ASP CYS PHE CYS GLY SSBOND 1 CYS A 2 CYS A 8 1555 1555 2.03 SSBOND 2 CYS A 4 CYS A 10 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 183 0 0 0 0 0 0 6 0 0 0 1 END