HEADER OXIDOREDUCTASE 06-SEP-00 1FQT TITLE CRYSTAL STRUCTURE OF THE RIESKE-TYPE FERREDOXIN ASSOCIATED WITH TITLE 2 BIPHENYL DIOXYGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIESKE-TYPE FERREDOXIN OF BIPHENYL DIOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BIPHENYL DIOXYGENASE, BIPHENYL DIOXYGENASE SYSTEM FERREDOXIN COMPND 5 COMPONENT, BIPHENYL DIOXYGENASE; COMPND 6 EC: 1.14.12.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA XENOVORANS; SOURCE 3 ORGANISM_TAXID: 266265; SOURCE 4 STRAIN: LB400; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PEBRE12 KEYWDS RIESKE-TYPE FERREDOXIN, 2FE-2S CLUSTER, BETA SANDWICH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.L.COLBERT,M.M.-J.COUTURE,L.D.ELTIS,J.T.BOLIN REVDAT 5 13-JUL-11 1FQT 1 VERSN REVDAT 4 24-FEB-09 1FQT 1 VERSN REVDAT 3 01-APR-03 1FQT 1 JRNL REVDAT 2 27-APR-01 1FQT 2 LINK CONECT REMARK REVDAT 1 03-JAN-01 1FQT 0 JRNL AUTH C.L.COLBERT,M.M.COUTURE,L.D.ELTIS,J.T.BOLIN JRNL TITL A CLUSTER EXPOSED: STRUCTURE OF THE RIESKE FERREDOXIN FROM JRNL TITL 2 BIPHENYL DIOXYGENASE AND THE REDOX PROPERTIES OF RIESKE FE-S JRNL TITL 3 PROTEINS. JRNL REF STRUCTURE FOLD.DES. V. 8 1267 2000 JRNL REFN ISSN 0969-2126 JRNL PMID 11188691 JRNL DOI 10.1016/S0969-2126(00)00536-0 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 34933 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1761 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5333 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 285 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1674 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 314 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.24000 REMARK 3 B22 (A**2) : 4.28000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.96 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.07 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.580 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.290 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.450 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.650 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 36.83 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PA REMARK 3 PARAMETER FILE 2 : WATER_REP.PARA REMARK 3 PARAMETER FILE 3 : FES.PARAM REMARK 3 PARAMETER FILE 4 : GLYCEROL.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : FES.TOP REMARK 3 TOPOLOGY FILE 4 : GLYCEROL.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE GEOMETRY WITHIN THE FE-S CLUSTER REMARK 3 AND THE BONDS WITH THE PROTEIN LIGANDS WERE RESTRAINED WITH FORCE REMARK 3 CONSTANTS OF: 200 KCAL MOLE^-1 ANG.^2 APPLIED TO FE-S (TARGET= REMARK 3 2.28 ANG.), FE-ND1 (2.05 ANG.), AND FE-FE (2.68 ANG.) DISTANCES; REMARK 3 40 KCAL MOLE^-1 RAD^-2 APPLIED TO ANGLES S-FE-ND1 (115 DEG.), S- REMARK 3 FE-S (105 DEG.), FE-S-FE (75 DEG.), ND1-FE-ND1 (90 DEG.), FE-ND1- REMARK 3 CG (108 DEG.), AND FE-S-CB (109.5 DEG.) REFINEMENT TARGET EQUALS REMARK 3 MAXIMUM LIKELIHOOD TARGET USING AMPLITUDES REMARK 4 REMARK 4 1FQT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-00. REMARK 100 THE RCSB ID CODE IS RCSB011831. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537,1.742,1.737 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL: REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : BENT CYLINDRICAL: SI-MIRROR (RH REMARK 200 COATING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34971 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 26.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.950 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.91 REMARK 200 R MERGE FOR SHELL (I) : 0.41200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MULTIPLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FE MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: INVERSE BEAM GEOMETRY WAS USED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME 5000, MES BUFFER, AMMONIUM REMARK 280 SULFATE, PH 6.3, VAPOR DIFFUSION, SITTING DROP AT 283K, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.20000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.20000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 1 SD CE REMARK 480 LYS A 2 CG CD CE NZ REMARK 480 GLU B 57 CD OE1 OE2 REMARK 480 LYS B 78 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 23 O HOH B 574 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 363 O HOH A 672 3556 1.94 REMARK 500 NH1 ARG A 92 O HOH A 363 3546 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 92 CZ ARG A 92 NH1 -0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 92 CG - CD - NE ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG A 92 NH1 - CZ - NH2 ANGL. DEV. = -11.2 DEGREES REMARK 500 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 18.2 DEGREES REMARK 500 ARG A 92 NE - CZ - NH2 ANGL. DEV. = -11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 7 -179.81 -173.78 REMARK 500 ASP A 95 -121.45 69.97 REMARK 500 ASP B 95 -113.55 64.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 92 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 403 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B 645 DISTANCE = 6.70 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A1001 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 43 SG REMARK 620 2 FES A1001 S1 110.8 REMARK 620 3 FES A1001 S2 111.4 105.1 REMARK 620 4 CYS A 63 SG 109.4 110.6 109.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A1001 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 45 ND1 REMARK 620 2 FES A1001 S1 114.6 REMARK 620 3 FES A1001 S2 112.9 105.0 REMARK 620 4 HIS A 66 ND1 95.8 109.9 119.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B2002 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 43 SG REMARK 620 2 FES B2002 S1 110.8 REMARK 620 3 FES B2002 S2 110.8 104.7 REMARK 620 4 CYS B 63 SG 108.8 110.6 111.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B2002 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 45 ND1 REMARK 620 2 FES B2002 S1 115.5 REMARK 620 3 FES B2002 S2 110.7 105.4 REMARK 620 4 HIS B 66 ND1 96.8 109.9 119.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 903 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RIE RELATED DB: PDB REMARK 900 RIESKE PROTEIN FROM BOVINE MITOCHONDRIA REMARK 900 RELATED ID: 1RFS RELATED DB: PDB REMARK 900 RIESKE PROTEIN FROM SPINACH CHLOROPLAST REMARK 900 RELATED ID: 1NDO RELATED DB: PDB REMARK 900 CONTAINS A RIESKE DOMAIN IN THE LARGE SUBUNIT DBREF 1FQT A 1 109 UNP P37332 BPHF_BURCE 1 109 DBREF 1FQT B 1 109 UNP P37332 BPHF_BURCE 1 109 SEQADV 1FQT GLY A -2 UNP P37332 INSERTION SEQADV 1FQT SER A -1 UNP P37332 INSERTION SEQADV 1FQT HIS A 0 UNP P37332 INSERTION SEQADV 1FQT GLY B -2 UNP P37332 INSERTION SEQADV 1FQT SER B -1 UNP P37332 INSERTION SEQADV 1FQT HIS B 0 UNP P37332 INSERTION SEQRES 1 A 112 GLY SER HIS MET LYS PHE THR ARG VAL CYS ASP ARG ARG SEQRES 2 A 112 ASP VAL PRO GLU GLY GLU ALA LEU LYS VAL GLU SER GLY SEQRES 3 A 112 GLY THR SER VAL ALA ILE PHE ASN VAL ASP GLY GLU LEU SEQRES 4 A 112 PHE ALA THR GLN ASP ARG CYS THR HIS GLY ASP TRP SER SEQRES 5 A 112 LEU SER ASP GLY GLY TYR LEU GLU GLY ASP VAL VAL GLU SEQRES 6 A 112 CYS SER LEU HIS MET GLY LYS PHE CYS VAL ARG THR GLY SEQRES 7 A 112 LYS VAL LYS SER PRO PRO PRO CYS GLU ALA LEU LYS ILE SEQRES 8 A 112 PHE PRO ILE ARG ILE GLU ASP ASN ASP VAL LEU VAL ASP SEQRES 9 A 112 PHE GLU ALA GLY TYR LEU ALA PRO SEQRES 1 B 112 GLY SER HIS MET LYS PHE THR ARG VAL CYS ASP ARG ARG SEQRES 2 B 112 ASP VAL PRO GLU GLY GLU ALA LEU LYS VAL GLU SER GLY SEQRES 3 B 112 GLY THR SER VAL ALA ILE PHE ASN VAL ASP GLY GLU LEU SEQRES 4 B 112 PHE ALA THR GLN ASP ARG CYS THR HIS GLY ASP TRP SER SEQRES 5 B 112 LEU SER ASP GLY GLY TYR LEU GLU GLY ASP VAL VAL GLU SEQRES 6 B 112 CYS SER LEU HIS MET GLY LYS PHE CYS VAL ARG THR GLY SEQRES 7 B 112 LYS VAL LYS SER PRO PRO PRO CYS GLU ALA LEU LYS ILE SEQRES 8 B 112 PHE PRO ILE ARG ILE GLU ASP ASN ASP VAL LEU VAL ASP SEQRES 9 B 112 PHE GLU ALA GLY TYR LEU ALA PRO HET FES A1001 4 HET FES B2002 4 HET GOL A 901 6 HET GOL A 902 6 HET GOL B 903 6 HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FES 2(FE2 S2) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 HOH *314(H2 O) HELIX 1 1 ARG A 10 VAL A 12 5 3 HELIX 2 2 ARG B 10 VAL B 12 5 3 SHEET 1 A 3 THR A 4 ASP A 8 0 SHEET 2 A 3 ASP A 97 VAL A 100 -1 O VAL A 98 N VAL A 6 SHEET 3 A 3 ILE A 91 GLU A 94 -1 O ARG A 92 N LEU A 99 SHEET 1 B 3 ALA A 17 SER A 22 0 SHEET 2 B 3 THR A 25 VAL A 32 -1 O THR A 25 N SER A 22 SHEET 3 B 3 GLU A 35 GLN A 40 -1 O GLU A 35 N VAL A 32 SHEET 1 C 4 LEU A 56 GLU A 57 0 SHEET 2 C 4 VAL A 60 GLU A 62 -1 O VAL A 60 N GLU A 57 SHEET 3 C 4 LYS A 69 CYS A 71 -1 O PHE A 70 N VAL A 61 SHEET 4 C 4 VAL A 77 SER A 79 -1 N LYS A 78 O LYS A 69 SHEET 1 D 3 THR B 4 ASP B 8 0 SHEET 2 D 3 ASP B 97 VAL B 100 -1 O VAL B 98 N VAL B 6 SHEET 3 D 3 ILE B 91 GLU B 94 -1 O ARG B 92 N LEU B 99 SHEET 1 E 4 ALA B 17 SER B 22 0 SHEET 2 E 4 THR B 25 VAL B 32 -1 O THR B 25 N SER B 22 SHEET 3 E 4 GLU B 35 GLN B 40 -1 O GLU B 35 N VAL B 32 SHEET 4 E 4 ILE B 88 PHE B 89 -1 N PHE B 89 O ALA B 38 SHEET 1 F 4 GLY B 54 GLU B 57 0 SHEET 2 F 4 VAL B 60 CYS B 63 -1 O VAL B 60 N GLU B 57 SHEET 3 F 4 LYS B 69 CYS B 71 -1 O PHE B 70 N VAL B 61 SHEET 4 F 4 VAL B 77 SER B 79 -1 N LYS B 78 O LYS B 69 LINK FE1 FES A1001 SG CYS A 43 1555 1555 2.28 LINK FE2 FES A1001 ND1 HIS A 45 1555 1555 2.10 LINK FE1 FES A1001 SG CYS A 63 1555 1555 2.30 LINK FE2 FES A1001 ND1 HIS A 66 1555 1555 2.08 LINK FE1 FES B2002 SG CYS B 43 1555 1555 2.28 LINK FE2 FES B2002 ND1 HIS B 45 1555 1555 2.09 LINK FE1 FES B2002 SG CYS B 63 1555 1555 2.31 LINK FE2 FES B2002 ND1 HIS B 66 1555 1555 2.08 CISPEP 1 PRO A 80 PRO A 81 0 2.27 CISPEP 2 PRO B 80 PRO B 81 0 -1.92 SITE 1 AC1 6 CYS A 43 HIS A 45 GLY A 46 CYS A 63 SITE 2 AC1 6 HIS A 66 GLY A 68 SITE 1 AC2 6 CYS B 43 HIS B 45 GLY B 46 CYS B 63 SITE 2 AC2 6 HIS B 66 GLY B 68 SITE 1 AC3 9 GLU A 84 ALA A 85 HOH A 322 HOH A 325 SITE 2 AC3 9 ARG B 5 VAL B 6 GLU B 21 HOH B 318 SITE 3 AC3 9 HOH B 324 SITE 1 AC4 8 GLU A 35 LEU A 36 HIS A 45 PRO A 81 SITE 2 AC4 8 ILE A 91 ILE A 93 HOH A 327 HOH A 546 SITE 1 AC5 7 GLU B 35 LEU B 36 HIS B 45 ILE B 91 SITE 2 AC5 7 ILE B 93 HOH B 326 HOH B 490 CRYST1 76.400 53.100 64.700 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013089 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015456 0.00000 MASTER 439 0 5 2 21 0 11 6 0 0 0 18 END