HEADER VIRUS 27-OCT-93 1FOD TITLE STRUCTURE OF A MAJOR IMMUNOGENIC SITE ON FOOT-AND-MOUTH TITLE 2 DISEASE VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOOT AND MOUTH DISEASE VIRUS; COMPND 3 CHAIN: 1; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FOOT AND MOUTH DISEASE VIRUS; COMPND 7 CHAIN: 2; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: FOOT AND MOUTH DISEASE VIRUS; COMPND 11 CHAIN: 3; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: FOOT AND MOUTH DISEASE VIRUS; COMPND 15 CHAIN: 4; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS; SOURCE 3 ORGANISM_TAXID: 12110; SOURCE 4 STRAIN: STRAIN BFS, 1860; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS; SOURCE 7 ORGANISM_TAXID: 12110; SOURCE 8 STRAIN: STRAIN BFS, 1860; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS; SOURCE 11 ORGANISM_TAXID: 12110; SOURCE 12 STRAIN: STRAIN BFS, 1860; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS; SOURCE 15 ORGANISM_TAXID: 12110; SOURCE 16 STRAIN: STRAIN BFS, 1860 KEYWDS VIRUS, ICOSAHEDRAL VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR D.T.LOGAN,S.LEA,R.LEWIS,D.STUART,E.FRY REVDAT 2 24-FEB-09 1FOD 1 VERSN REVDAT 1 31-JAN-94 1FOD 0 JRNL AUTH D.LOGAN,R.ABU-GHAZALEH,W.BLAKEMORE,S.CURRY, JRNL AUTH 2 T.JACKSON,A.KING,S.LEA,R.LEWIS,J.NEWMAN,N.PARRY, JRNL AUTH 3 D.ROWLANDS,D.STUART,E.FRY JRNL TITL STRUCTURE OF A MAJOR IMMUNOGENIC SITE ON JRNL TITL 2 FOOT-AND-MOUTH DISEASE VIRUS. JRNL REF NATURE V. 362 566 1993 JRNL REFN ISSN 0028-0836 JRNL PMID 8385272 JRNL DOI 10.1038/362566A0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.FRY,D.LOGAN,R.ACHARYA,G.FOX,D.ROWLANDS,F.BROWN, REMARK 1 AUTH 2 D.STUART REMARK 1 TITL ARCHITECTURE AND TOPOGRAPHY OF AN APHTHOVIRUS REMARK 1 REF SEMIN.VIROL. V. 1 439 1990 REMARK 1 REFN ISSN 1044-5773 REMARK 1 REFERENCE 2 REMARK 1 AUTH N.PARRY,G.FOX,D.ROWLANDS,F.BROWN,E.FRY,R.ACHARYA, REMARK 1 AUTH 2 D.LOGAN,D.STUART REMARK 1 TITL STRUCTURAL AND SEROLOGICAL EVIDENCE FOR A NOVEL REMARK 1 TITL 2 MECHANISM OF ANTIGENIC VARIATION IN FOOT-AND-MOUTH REMARK 1 TITL 3 DISEASE VIRUS REMARK 1 REF NATURE V. 347 569 1990 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 3 REMARK 1 AUTH R.ACHARYA,E.FRY,D.STUART,G.FOX,D.ROWLANDS,F.BROWN REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF FOOT-AND-MOUTH REMARK 1 TITL 2 DISEASE VIRUS AT 2.9 ANGSTROMS RESOLUTION REMARK 1 REF NATURE V. 337 709 1989 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5363 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.023 REMARK 3 BOND ANGLES (DEGREES) : 3.70 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FOD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 172.50000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 172.50000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 172.50000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 172.50000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 172.50000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 172.50000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 172.50000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 172.50000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 172.50000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 172.50000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 172.50000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 172.50000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 172.50000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 172.50000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 172.50000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 172.50000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 172.50000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 172.50000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 172.50000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 172.50000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 172.50000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 172.50000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 172.50000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 172.50000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 172.50000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 172.50000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 172.50000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 172.50000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 172.50000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 172.50000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 172.50000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 172.50000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 172.50000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 172.50000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 172.50000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 172.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1, 2, 3, 4 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 2 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 2 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 3 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 4 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 5 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 7 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 8 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 8 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 9 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 10 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 10 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 11 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 12 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 12 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 13 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 13 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 13 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 14 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 14 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 14 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 15 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 15 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 15 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 16 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 17 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 17 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 18 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 18 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 18 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 19 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 19 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 19 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 20 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 20 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 20 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 21 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 22 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 22 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 23 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 24 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 24 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 25 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 25 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 25 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 26 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 26 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 26 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 27 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 27 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 28 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 28 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 28 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 29 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 29 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 29 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 30 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 30 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 30 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 31 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 31 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 32 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 32 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 33 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 33 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 33 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 34 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 35 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 35 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 36 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 36 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 37 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 37 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 38 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 38 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 38 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 39 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 39 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 39 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 40 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 40 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 40 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 42 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 43 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 43 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 44 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 44 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 44 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 45 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 45 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 45 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 46 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 46 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 47 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 47 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 48 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 48 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 48 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 49 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 49 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 50 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 50 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 50 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 52 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 52 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 53 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 53 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 53 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 54 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 54 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 55 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 56 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 57 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 58 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 58 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 59 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 59 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 59 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 60 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 60 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 60 0.809017 -0.309017 -0.500000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 ATTACHMENT OF FOOT AND MOUTH DISEASE VIRUS (FMDV) TO ITS REMARK 400 CELLULAR RECEPTOR INVOLVES A LONG AND HIGHLY ANTIGENIC REMARK 400 LOOP CONTAINING THE CONSERVED ARG-GLY-ASP SEQUENCE, A REMARK 400 MOTIF KNOWN TO BE A RECOGNITION ELEMENT IN MANY REMARK 400 INTEGRIN-DEPENDENT CELL ADHESION PROCESSES. IN THE REMARK 400 ORIGINAL CRYSTAL STRUCTURE OF FMDV (REF 3), THE REMARK 400 ARG-GLY-ASP CONTAINING LOOP LOCATED BETWEEN BETA STRANDS G REMARK 400 AND H OF CAPSID PROTEIN VP1 WAS DISORDERED. IT REMARK 400 WAS SURMISED THAT THE DISORDER WAS ENHANCED BY A REMARK 400 DISULFIDE BOND LINKING THE BASE OF THE LOOP CYS 134 TO REMARK 400 CYS 130 OF VP2. THESE COORDINATES ARE FOR VIRUS EXPOSED TO REMARK 400 A REDUCING ENVIRONMENT (CRYSTALS WERE SOAKED IN 10MM DTT REMARK 400 PRIOR TO DATA COLLECTION) SO THAT THE DISULFIDE BRIDGE WAS REMARK 400 AT LEAST 85 PER CENT REDUCED. IN THIS STRUCTURE RESIDUES REMARK 400 134 - 157 ADOPT A SINGLE CONFORMATION WHICH IS FOR THE MOST REMARK 400 PART UNAMBIGUOUS. HOWEVER, RESIDUES 137 AND 138 OF VP1 REMARK 400 WERE DIFFICULT TO MODEL EXACTLY - THEY LIE IN ESSENTIALLY REMARK 400 THE CORRECT POSITION BUT THE DEPOSITORS CANNOT BE SURE THAT REMARK 400 THE CONFORMATION IS EXACTLY RIGHT. THE REDUCED VIRUS REMARK 400 RETAINS INFECTIVITY AND SEROLOGICAL EXPERIMENTS SUGGEST REMARK 400 THAT SOME OF THE LOOP'S INTERNAL STRUCTURE IS CONSERVED. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN 1 211 REMARK 465 THR 1 212 REMARK 465 LEU 1 213 REMARK 465 ASP 2 1 REMARK 465 LYS 2 2 REMARK 465 LYS 2 3 REMARK 465 THR 2 4 REMARK 465 GLY 4 1 REMARK 465 ALA 4 2 REMARK 465 GLY 4 3 REMARK 465 GLN 4 4 REMARK 465 SER 4 5 REMARK 465 SER 4 6 REMARK 465 PRO 4 7 REMARK 465 ALA 4 8 REMARK 465 THR 4 9 REMARK 465 GLY 4 10 REMARK 465 SER 4 11 REMARK 465 GLN 4 12 REMARK 465 ASN 4 13 REMARK 465 GLN 4 14 REMARK 465 ASN 4 41 REMARK 465 ALA 4 42 REMARK 465 ILE 4 43 REMARK 465 SER 4 44 REMARK 465 GLY 4 45 REMARK 465 GLY 4 46 REMARK 465 SER 4 47 REMARK 465 ASN 4 48 REMARK 465 GLU 4 49 REMARK 465 GLY 4 50 REMARK 465 SER 4 51 REMARK 465 THR 4 52 REMARK 465 ASP 4 53 REMARK 465 THR 4 54 REMARK 465 THR 4 55 REMARK 465 SER 4 56 REMARK 465 THR 4 57 REMARK 465 HIS 4 58 REMARK 465 THR 4 59 REMARK 465 THR 4 60 REMARK 465 ASN 4 61 REMARK 465 THR 4 62 REMARK 465 GLN 4 63 REMARK 465 ASN 4 64 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU 2 5 CB CG CD OE1 OE2 REMARK 470 THR 2 8 CB OG1 CG2 REMARK 470 ASP 4 40 CA C O CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE 2 14 CA ILE 2 14 CB 0.140 REMARK 500 VAL 2 32 CA VAL 2 32 CB 0.132 REMARK 500 VAL 2 112 CA VAL 2 112 CB 0.134 REMARK 500 ARG 2 167 CZ ARG 2 167 NH2 0.090 REMARK 500 SER 4 69 CA SER 4 69 CB -0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG 1 26 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ILE 1 50 CB - CG1 - CD1 ANGL. DEV. = -19.2 DEGREES REMARK 500 VAL 1 89 N - CA - CB ANGL. DEV. = -14.5 DEGREES REMARK 500 LYS 1 96 CA - CB - CG ANGL. DEV. = 16.7 DEGREES REMARK 500 THR 1 101 N - CA - CB ANGL. DEV. = -13.6 DEGREES REMARK 500 THR 1 101 CA - CB - CG2 ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG 1 114 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG 1 114 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG 1 114 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LEU 1 115 CB - CG - CD2 ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG 1 124 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 VAL 1 129 CA - CB - CG2 ANGL. DEV. = -10.4 DEGREES REMARK 500 TYR 1 136 CB - CG - CD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 TYR 1 136 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG 1 145 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP 1 147 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG 1 172 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG 1 179 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG 1 179 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG 1 182 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG 1 182 CD - NE - CZ ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG 1 182 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG 1 182 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 HIS 1 195 CE1 - NE2 - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG 1 200 CD - NE - CZ ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG 1 200 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG 1 200 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 PRO 1 208 CA - C - N ANGL. DEV. = -23.1 DEGREES REMARK 500 PRO 1 208 O - C - N ANGL. DEV. = 15.4 DEGREES REMARK 500 GLU 2 6 N - CA - C ANGL. DEV. = 18.8 DEGREES REMARK 500 THR 2 7 CA - CB - CG2 ANGL. DEV. = -10.1 DEGREES REMARK 500 THR 2 7 N - CA - C ANGL. DEV. = 27.2 DEGREES REMARK 500 THR 2 7 C - N - CA ANGL. DEV. = 15.2 DEGREES REMARK 500 LEU 2 9 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 LEU 2 10 CA - C - N ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG 2 13 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG 2 13 N - CA - C ANGL. DEV. = -20.1 DEGREES REMARK 500 ARG 2 18 CA - CB - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 ARG 2 18 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 HIS 2 21 CE1 - NE2 - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 THR 2 26 CB - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 THR 2 26 N - CA - CB ANGL. DEV. = 12.3 DEGREES REMARK 500 VAL 2 30 CA - CB - CG1 ANGL. DEV. = 10.9 DEGREES REMARK 500 VAL 2 30 CA - CB - CG2 ANGL. DEV. = -11.0 DEGREES REMARK 500 SER 2 29 CA - C - N ANGL. DEV. = 14.3 DEGREES REMARK 500 VAL 2 43 N - CA - CB ANGL. DEV. = -14.5 DEGREES REMARK 500 ARG 2 54 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG 2 60 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG 2 102 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG 2 102 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 97 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA 1 8 -3.59 89.08 REMARK 500 ARG 1 27 30.62 -98.23 REMARK 500 GLN 1 47 -64.53 -130.17 REMARK 500 PRO 1 104 99.78 -44.76 REMARK 500 ARG 1 138 -168.21 -163.14 REMARK 500 PRO 1 160 152.07 -48.53 REMARK 500 CYS 1 187 86.87 59.41 REMARK 500 PRO 1 208 135.80 -38.44 REMARK 500 VAL 1 209 -74.15 1.96 REMARK 500 THR 2 7 147.01 63.10 REMARK 500 THR 2 8 114.96 2.66 REMARK 500 LEU 2 9 -26.35 50.48 REMARK 500 LEU 2 10 -154.29 -130.46 REMARK 500 ASP 2 12 76.24 -113.96 REMARK 500 VAL 2 30 -11.31 63.30 REMARK 500 TYR 2 36 -21.72 71.64 REMARK 500 ASP 2 41 -169.73 -77.39 REMARK 500 LEU 2 66 -67.18 -109.15 REMARK 500 ASN 2 190 -143.19 55.41 REMARK 500 PRO 2 215 172.57 -59.97 REMARK 500 MET 3 79 78.40 -67.75 REMARK 500 VAL 3 174 135.71 168.34 REMARK 500 ALA 3 175 103.26 -55.22 REMARK 500 GLN 3 181 33.72 -99.37 REMARK 500 LEU 3 213 83.12 67.88 REMARK 500 ARG 3 218 -150.93 74.94 REMARK 500 ALA 3 219 93.87 90.24 REMARK 500 ASN 4 17 72.25 -101.52 REMARK 500 ASP 4 66 -109.33 15.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR 3 16 -12.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL 1 89 47.2 L L OUTSIDE RANGE REMARK 500 GLU 2 6 23.7 L L OUTSIDE RANGE REMARK 500 THR 2 7 17.9 L L OUTSIDE RANGE REMARK 500 ARG 2 13 46.2 L L OUTSIDE RANGE REMARK 500 SER 2 29 24.3 L L OUTSIDE RANGE REMARK 500 THR 3 17 45.3 L L OUTSIDE RANGE REMARK 500 VAL 3 64 48.6 L L OUTSIDE RANGE REMARK 500 ARG 3 218 45.5 L L OUTSIDE RANGE REMARK 500 ALA 3 219 19.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 REMARK 999 SEQUENCE ADVISORY NOTICE: REMARK 999 DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. REMARK 999 REMARK 999 SWISS-PROT ENTRY NAME: POLG_FMDVO REMARK 999 REMARK 999 SWISS-PROT RESIDUE PDB SEQRES REMARK 999 NAME NUMBER NAME CHAIN SEQ/INSERT CODE REMARK 999 ILE 780 VAL 1 56 REMARK 999 ALA 788 GLY 1 64 REMARK 999 ASN 861 SER 1 137 REMARK 999 TYR 416 CYS 2 130 REMARK 999 GLN 589 HIS 3 85 REMARK 999 ALA 672 THR 3 168 REMARK 999 GLY 677 ASP 3 173 REMARK 999 REMARK 999 THE SEQUENCE USED IN THIS ENTRY AGREES WITH THAT DETERMINED REMARK 999 BY D. ROWLANDS FOR O1BFS 1860 EXCEPT FOR RESIDUE 173 OF REMARK 999 CHAIN 3. THIS DIFFERENCE HAS NOT BEEN RESOLVED BECAUSE THE REMARK 999 AUTHORS OF THIS ENTRY FIND THAT THE DENSITY FITS WELL IF REMARK 999 THEY ASSUME THAT RESIDUE 173 OF CHAIN 3 IS ASP. DBREF 1FOD 1 1 213 UNP Q84771 Q84771_9PICO 508 720 DBREF 1FOD 2 1 218 UNP Q84771 Q84771_9PICO 70 287 DBREF 1FOD 3 1 220 UNP Q84771 Q84771_9PICO 288 507 DBREF 1FOD 4 1 85 UNP P87677 P87677_9PICO 1 85 SEQADV 1FOD VAL 1 56 UNP Q84771 ILE 780 CONFLICT SEQADV 1FOD GLY 1 64 UNP Q84771 ALA 788 CONFLICT SEQADV 1FOD SER 1 137 UNP Q84771 ASN 861 CONFLICT SEQADV 1FOD CYS 2 130 UNP Q84771 TYR 416 CONFLICT SEQADV 1FOD HIS 3 85 UNP Q84771 GLN 589 CONFLICT SEQADV 1FOD THR 3 168 UNP Q84771 ALA 672 CONFLICT SEQADV 1FOD ASP 3 173 UNP Q84771 GLY 677 CONFLICT SEQRES 1 1 213 THR THR SER ALA GLY GLU SER ALA ASP PRO VAL THR THR SEQRES 2 1 213 THR VAL GLU ASN TYR GLY GLY GLU THR GLN ILE GLN ARG SEQRES 3 1 213 ARG GLN HIS THR ASP VAL SER PHE ILE MET ASP ARG PHE SEQRES 4 1 213 VAL LYS VAL THR PRO GLN ASN GLN ILE ASN ILE LEU ASP SEQRES 5 1 213 LEU MET GLN VAL PRO SER HIS THR LEU VAL GLY GLY LEU SEQRES 6 1 213 LEU ARG ALA SER THR TYR TYR PHE SER ASP LEU GLU ILE SEQRES 7 1 213 ALA VAL LYS HIS GLU GLY ASP LEU THR TRP VAL PRO ASN SEQRES 8 1 213 GLY ALA PRO GLU LYS ALA LEU ASP ASN THR THR ASN PRO SEQRES 9 1 213 THR ALA TYR HIS LYS ALA PRO LEU THR ARG LEU ALA LEU SEQRES 10 1 213 PRO TYR THR ALA PRO HIS ARG VAL LEU ALA THR VAL TYR SEQRES 11 1 213 ASN GLY GLU CYS ARG TYR SER ARG ASN ALA VAL PRO ASN SEQRES 12 1 213 LEU ARG GLY ASP LEU GLN VAL LEU ALA GLN LYS VAL ALA SEQRES 13 1 213 ARG THR LEU PRO THR SER PHE ASN TYR GLY ALA ILE LYS SEQRES 14 1 213 ALA THR ARG VAL THR GLU LEU LEU TYR ARG MET LYS ARG SEQRES 15 1 213 ALA GLU THR TYR CYS PRO ARG PRO LEU LEU ALA ILE HIS SEQRES 16 1 213 PRO THR GLU ALA ARG HIS LYS GLN LYS ILE VAL ALA PRO SEQRES 17 1 213 VAL LYS GLN THR LEU SEQRES 1 2 218 ASP LYS LYS THR GLU GLU THR THR LEU LEU GLU ASP ARG SEQRES 2 2 218 ILE LEU THR THR ARG ASN GLY HIS THR THR SER THR THR SEQRES 3 2 218 GLN SER SER VAL GLY VAL THR TYR GLY TYR ALA THR ALA SEQRES 4 2 218 GLU ASP PHE VAL SER GLY PRO ASN THR SER GLY LEU GLU SEQRES 5 2 218 THR ARG VAL VAL GLN ALA GLU ARG PHE PHE LYS THR HIS SEQRES 6 2 218 LEU PHE ASP TRP VAL THR SER ASP SER PHE GLY ARG CYS SEQRES 7 2 218 HIS LEU LEU GLU LEU PRO THR ASP HIS LYS GLY VAL TYR SEQRES 8 2 218 GLY SER LEU THR ASP SER TYR ALA TYR MET ARG ASN GLY SEQRES 9 2 218 TRP ASP VAL GLU VAL THR ALA VAL GLY ASN GLN PHE ASN SEQRES 10 2 218 GLY GLY CYS LEU LEU VAL ALA MET VAL PRO GLU LEU CYS SEQRES 11 2 218 SER ILE GLN LYS ARG GLU LEU TYR GLN LEU THR LEU PHE SEQRES 12 2 218 PRO HIS GLN PHE ILE ASN PRO ARG THR ASN MET THR ALA SEQRES 13 2 218 HIS ILE THR VAL PRO PHE VAL GLY VAL ASN ARG TYR ASP SEQRES 14 2 218 GLN TYR LYS VAL HIS LYS PRO TRP THR LEU VAL VAL MET SEQRES 15 2 218 VAL VAL ALA PRO LEU THR VAL ASN THR GLU GLY ALA PRO SEQRES 16 2 218 GLN ILE LYS VAL TYR ALA ASN ILE ALA PRO THR ASN VAL SEQRES 17 2 218 HIS VAL ALA GLY GLU PHE PRO SER LYS GLU SEQRES 1 3 220 GLY ILE PHE PRO VAL ALA CYS SER ASP GLY TYR GLY GLY SEQRES 2 3 220 LEU VAL THR THR ASP PRO LYS THR ALA ASP PRO VAL TYR SEQRES 3 3 220 GLY LYS VAL PHE ASN PRO PRO ARG ASN GLN LEU PRO GLY SEQRES 4 3 220 ARG PHE THR ASN LEU LEU ASP VAL ALA GLU ALA CYS PRO SEQRES 5 3 220 THR PHE LEU ARG PHE GLU GLY GLY VAL PRO TYR VAL THR SEQRES 6 3 220 THR LYS THR ASP SER ASP ARG VAL LEU ALA GLN PHE ASP SEQRES 7 3 220 MET SER LEU ALA ALA LYS HIS MET SER ASN THR PHE LEU SEQRES 8 3 220 ALA GLY LEU ALA GLN TYR TYR THR GLN TYR SER GLY THR SEQRES 9 3 220 ILE ASN LEU HIS PHE MET PHE THR GLY PRO THR ASP ALA SEQRES 10 3 220 LYS ALA ARG TYR MET VAL ALA TYR ALA PRO PRO GLY MET SEQRES 11 3 220 GLU PRO PRO LYS THR PRO GLU ALA ALA ALA HIS CYS ILE SEQRES 12 3 220 HIS ALA GLU TRP ASP THR GLY LEU ASN SER LYS PHE THR SEQRES 13 3 220 PHE SER ILE PRO TYR LEU SER ALA ALA ASP TYR THR TYR SEQRES 14 3 220 THR ALA SER ASP VAL ALA GLU THR THR ASN VAL GLN GLY SEQRES 15 3 220 TRP VAL CYS LEU PHE GLN ILE THR HIS GLY LYS ALA ASP SEQRES 16 3 220 GLY ASP ALA LEU VAL VAL LEU ALA SER ALA GLY LYS ASP SEQRES 17 3 220 PHE GLU LEU ARG LEU PRO VAL ASP ALA ARG ALA GLU SEQRES 1 4 85 GLY ALA GLY GLN SER SER PRO ALA THR GLY SER GLN ASN SEQRES 2 4 85 GLN SER GLY ASN THR GLY SER ILE ILE ASN ASN TYR TYR SEQRES 3 4 85 MET GLN GLN TYR GLN ASN SER MET ASP THR GLN LEU GLY SEQRES 4 4 85 ASP ASN ALA ILE SER GLY GLY SER ASN GLU GLY SER THR SEQRES 5 4 85 ASP THR THR SER THR HIS THR THR ASN THR GLN ASN ASN SEQRES 6 4 85 ASP TRP PHE SER LYS LEU ALA SER SER ALA PHE SER GLY SEQRES 7 4 85 LEU PHE GLY ALA LEU LEU ALA HELIX 1 1 THR 1 14 GLY 1 19 5 6 HELIX 2 2 ARG 1 27 THR 1 30 5 4 HELIX 3 3 ASP 1 31 ASP 1 37 1 7 HELIX 4 4 ASP 1 52 VAL 1 56 5 5 HELIX 5 5 THR 1 60 ALA 1 68 1 9 HELIX 6 6 PRO 1 94 ASN 1 100 5 7 HELIX 7 7 ASP 1 147 ARG 1 157 5 11 HELIX 8 8 GLY 2 45 SER 2 49 5 5 HELIX 9 9 VAL 2 56 GLU 2 59 5 4 HELIX 10 10 GLY 2 89 THR 2 95 1 7 HELIX 11 11 GLN 2 133 PHE 2 143 5 11 HELIX 12 12 ASN 3 43 CYS 3 51 1 9 HELIX 13 13 THR 3 89 GLN 3 96 1 8 HELIX 14 14 THR 3 135 ALA 3 140 1 6 HELIX 15 15 MET 4 27 ASN 4 32 1 6 HELIX 16 16 ASN 4 65 SER 4 74 1 10 SHEET 1 A 4 VAL 1 40 VAL 1 42 0 SHEET 2 A 4 ARG 1 172 PRO 1 188 -1 O LEU 1 176 N VAL 1 42 SHEET 3 A 4 SER 1 69 GLU 1 83 -1 N THR 1 70 O TYR 1 186 SHEET 4 A 4 THR 1 113 LEU 1 117 -1 N THR 1 113 O VAL 1 80 SHEET 1 B 4 VAL 1 40 VAL 1 42 0 SHEET 2 B 4 ARG 1 172 PRO 1 188 -1 O LEU 1 176 N VAL 1 42 SHEET 3 B 4 SER 1 69 GLU 1 83 -1 N THR 1 70 O TYR 1 186 SHEET 4 B 4 LEU 1 126 ALA 1 127 -1 N LEU 1 126 O TYR 1 72 SHEET 1 C 4 ILE 1 48 ILE 1 50 0 SHEET 2 C 4 ALA 1 167 LYS 1 169 -1 O ILE 1 168 N ASN 1 49 SHEET 3 C 4 LEU 1 86 VAL 1 89 -1 N THR 1 87 O LYS 1 169 SHEET 4 C 4 THR 1 105 ALA 1 106 -1 N ALA 1 106 O LEU 1 86 SHEET 1 D 5 ARG 1 145 GLY 1 146 0 SHEET 2 D 5 CYS 2 78 LEU 2 83 -1 N LEU 2 80 O GLY 1 146 SHEET 3 D 5 TRP 2 177 THR 2 188 -1 O TRP 2 177 N LEU 2 83 SHEET 4 D 5 GLY 2 118 PRO 2 127 -1 N GLY 2 118 O THR 2 188 SHEET 5 D 5 HIS 2 145 ILE 2 148 -1 O GLN 2 146 N VAL 2 123 SHEET 1 E 2 LEU 2 15 ASN 2 19 0 SHEET 2 E 2 THR 2 22 THR 2 26 -1 O THR 2 22 N ASN 2 19 SHEET 1 F 5 THR 2 33 TYR 2 34 0 SHEET 2 F 5 THR 2 155 VAL 2 160 1 O HIS 2 157 N THR 2 33 SHEET 3 F 5 TYR 2 98 ALA 2 111 -1 N TRP 2 105 O VAL 2 160 SHEET 4 F 5 ILE 2 197 GLU 2 213 -1 O TYR 2 200 N THR 2 110 SHEET 5 F 5 THR 2 53 ARG 2 54 -1 O THR 2 53 N VAL 2 210 SHEET 1 G 5 THR 2 33 TYR 2 34 0 SHEET 2 G 5 THR 2 155 VAL 2 160 1 O HIS 2 157 N THR 2 33 SHEET 3 G 5 TYR 2 98 ALA 2 111 -1 N TRP 2 105 O VAL 2 160 SHEET 4 G 5 ILE 2 197 GLU 2 213 -1 O TYR 2 200 N THR 2 110 SHEET 5 G 5 PHE 2 62 TRP 2 69 -1 O PHE 2 62 N ILE 2 203 SHEET 1 H 4 LYS 3 154 ILE 3 159 0 SHEET 2 H 4 ILE 3 105 PHE 3 111 -1 O ILE 3 105 N ILE 3 159 SHEET 3 H 4 ALA 3 198 ALA 3 205 -1 N VAL 3 200 O MET 3 110 SHEET 4 H 4 THR 3 53 PHE 3 54 -1 O THR 3 53 N ALA 3 203 SHEET 1 I 4 LYS 3 154 ILE 3 159 0 SHEET 2 I 4 ILE 3 105 PHE 3 111 -1 O ILE 3 105 N ILE 3 159 SHEET 3 I 4 ALA 3 198 ALA 3 205 -1 N VAL 3 200 O MET 3 110 SHEET 4 I 4 TYR 3 63 THR 3 65 -1 O VAL 3 64 N LEU 3 199 SHEET 1 J 4 VAL 3 73 ASP 3 78 0 SHEET 2 J 4 TRP 3 183 GLY 3 192 -1 N VAL 3 184 O PHE 3 77 SHEET 3 J 4 LYS 3 118 ALA 3 126 -1 O LYS 3 118 N GLY 3 192 SHEET 4 J 4 ILE 3 143 ASP 3 148 -1 O ILE 3 143 N TYR 3 125 SHEET 1 K 3 THR 3 168 TYR 3 169 0 SHEET 2 K 3 TYR 3 98 SER 3 102 -1 N TYR 3 101 O THR 3 168 SHEET 3 K 3 GLU 3 210 PRO 3 214 -1 N GLU 3 210 O SER 3 102 CISPEP 1 ALA 1 110 PRO 1 111 0 0.73 CISPEP 2 LEU 2 83 PRO 2 84 0 0.77 CRYST1 345.000 345.000 345.000 90.00 90.00 90.00 I 2 3 120 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.002899 0.000000 0.000000 0.00000 SCALE2 0.000000 0.002899 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002899 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.500000 -0.809017 0.309017 0.00000 MTRIX2 2 0.809017 0.309017 -0.500000 0.00000 MTRIX3 2 0.309017 0.500000 0.809017 0.00000 MTRIX1 3 -0.309017 -0.500000 0.809017 0.00000 MTRIX2 3 0.500000 -0.809017 -0.309017 0.00000 MTRIX3 3 0.809017 0.309017 0.500000 0.00000 MTRIX1 4 -0.309017 0.500000 0.809017 0.00000 MTRIX2 4 -0.500000 -0.809017 0.309017 0.00000 MTRIX3 4 0.809017 -0.309017 0.500000 0.00000 MTRIX1 5 0.500000 0.809017 0.309017 0.00000 MTRIX2 5 -0.809017 0.309017 0.500000 0.00000 MTRIX3 5 0.309017 -0.500000 0.809017 0.00000 MASTER 761 2 0 16 44 0 0 21 0 0 0 58 END