HEADER TRANSCRIPTION 17-AUG-00 1FMH TITLE NMR SOLUTION STRUCTURE OF A DESIGNED HETERODIMERIC LEUCINE TITLE 2 ZIPPER COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL CONTROL PROTEIN GCN4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LEUCINE ZIPPER ACIDIC CHAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GENERAL CONTROL PROTEIN GCN4; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: LEUCINE ZIPPER BASIC CHAIN; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETIC PEPTIDE BASED ON THE SEQUENCE OF SOURCE 4 THE LEUCINE ZIPPER DOMAIN IN GCN4 (BAKER'S YEAST); SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 OTHER_DETAILS: SYNTHETIC PEPTIDE BASED ON THE SEQUENCE OF SOURCE 8 THE LEUCINE ZIPPER DOMAIN IN GCN4 (BAKER'S YEAST) KEYWDS COILED COIL, LEUCINE ZIPPER, INTER-HELICAL ION PAIRING, KEYWDS 2 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR D.N.MARTI,I.JELESAROV,H.R.BOSSHARD REVDAT 2 24-FEB-09 1FMH 1 VERSN REVDAT 1 01-NOV-00 1FMH 0 JRNL AUTH D.N.MARTI,I.JELESAROV,H.R.BOSSHARD JRNL TITL INTERHELICAL ION PAIRING IN COILED COILS: SOLUTION JRNL TITL 2 STRUCTURE OF A HETERODIMERIC LEUCINE ZIPPER AND JRNL TITL 3 DETERMINATION OF PKA VALUES OF GLU SIDE CHAINS. JRNL REF BIOCHEMISTRY V. 39 12804 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 11041845 JRNL DOI 10.1021/BI001242E REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.JELESAROV,H.R.BOSSHARD REMARK 1 TITL THERMODYNAMIC CHARACTERIZATION OF THE COUPLED REMARK 1 TITL 2 FOLDING AND ASSOCIATION OF HETERODIMERIC COILED REMARK 1 TITL 3 COILS (LEUCINE ZIPPERS) REMARK 1 REF J.MOL.BIOL. V. 263 344 1996 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1996.0579 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.DURR,I.JELESAROV,H.R.BOSSHARD REMARK 1 TITL EXTREMELY FAST FOLDING OF A VERY STABLE LEUCINE REMARK 1 TITL 2 ZIPPER WITH A STRENGTHENED HYDROPHOBIC CORE AND REMARK 1 TITL 3 LACKING ELECTROSTATIC INTERACTIONS BETWEEN HELICES REMARK 1 REF BIOCHEMISTRY V. 38 870 1999 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI981891E REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES WERE CALCULATED ON THE REMARK 3 BASIS OF 1494 NOE DERIVED DISTANCE CONSTRAINTS AND 52 PHI REMARK 3 ANGLE RESTRAINTS REMARK 4 REMARK 4 1FMH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-00. REMARK 100 THE RCSB ID CODE IS RCSB011714. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 5.65 REMARK 210 IONIC STRENGTH : 10 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.1 MM AB ZIPPER; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY, 2D TOCSY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, FELIX 98, X-PLOR REMARK 210 3.851 REMARK 210 METHOD USED : 1. DISTANCE GEOMETRY/ REMARK 210 REGULARIZATION, 2. SIMULATED REMARK 210 ANNEALING, 3. MOLECULAR REMARK 210 DYNAMICS SIMULATION INCLUDING REMARK 210 8 ANGSTROMS WATER SHELL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 14 REMARK 210 REMARK 210 REMARK: STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR REMARK 210 TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 30 -73.09 -114.91 REMARK 500 1 CYS B 30 46.63 -149.41 REMARK 500 2 CYS B 30 -66.82 -137.04 REMARK 500 3 CYS B 30 -66.52 -147.28 REMARK 500 5 CYS A 30 -70.74 -142.84 REMARK 500 5 CYS B 30 -76.17 -163.54 REMARK 500 6 CYS B 30 -59.27 -137.64 REMARK 500 7 CYS A 30 52.32 -107.71 REMARK 500 8 CYS B 30 -62.37 -140.15 REMARK 500 11 CYS B 30 -73.08 -131.60 REMARK 500 15 CYS B 30 -63.06 -129.13 REMARK 500 16 CYS B 30 49.99 -140.35 REMARK 500 17 CYS B 30 -46.81 -142.01 REMARK 500 21 CYS B 30 -70.63 -155.45 REMARK 500 23 CYS B 30 -63.94 -134.72 REMARK 500 24 CYS B 30 -81.50 -136.33 REMARK 500 25 CYS B 30 -63.25 -136.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 32 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 B 32 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZTA RELATED DB: PDB REMARK 900 2ZTA IS GCN4 HOMODIMERIC LEUCINE ZIPPER REMARK 900 RELATED ID: 1JUN RELATED DB: PDB REMARK 900 1JUN IS C-JUN HOMODIMERIC LEUCINE ZIPPER REMARK 900 RELATED ID: 2A93 RELATED DB: PDB REMARK 900 2A93 IS C-MYC-MAX HETERODIMERIC LEUCINE ZIPPER DBREF 1FMH A 1 31 UNP P03069 GCN4_YEAST 249 279 DBREF 1FMH B 1 31 UNP P03069 GCN4_YEAST 249 279 SEQADV 1FMH GLU A 1 UNP P03069 ARG 249 ENGINEERED SEQADV 1FMH VAL A 2 UNP P03069 MET 250 ENGINEERED SEQADV 1FMH ALA A 3 UNP P03069 LYS 251 ENGINEERED SEQADV 1FMH LYS A 7 UNP P03069 ASP 255 ENGINEERED SEQADV 1FMH GLU A 8 UNP P03069 LYS 256 ENGINEERED SEQADV 1FMH ALA A 10 UNP P03069 GLU 258 ENGINEERED SEQADV 1FMH GLN A 11 UNP P03069 GLU 259 ENGINEERED SEQADV 1FMH ALA A 12 UNP P03069 LEU 260 ENGINEERED SEQADV 1FMH GLU A 13 UNP P03069 LEU 261 ENGINEERED SEQADV 1FMH ALA A 14 UNP P03069 SER 262 ENGINEERED SEQADV 1FMH GLU A 15 UNP P03069 LYS 263 ENGINEERED SEQADV 1FMH GLN A 18 UNP P03069 HIS 266 ENGINEERED SEQADV 1FMH GLN A 21 UNP P03069 ASN 269 ENGINEERED SEQADV 1FMH GLN A 25 UNP P03069 ARG 273 ENGINEERED SEQADV 1FMH GLU A 27 UNP P03069 LYS 275 ENGINEERED SEQADV 1FMH HIS A 28 UNP P03069 LYS 276 ENGINEERED SEQADV 1FMH GLU A 29 UNP P03069 LEU 277 ENGINEERED SEQADV 1FMH CYS A 30 UNP P03069 VAL 278 ENGINEERED SEQADV 1FMH GLU B 1 UNP P03069 ARG 249 ENGINEERED SEQADV 1FMH VAL B 2 UNP P03069 MET 250 ENGINEERED SEQADV 1FMH GLN B 3 UNP P03069 LYS 251 ENGINEERED SEQADV 1FMH ALA B 4 UNP P03069 GLN 252 ENGINEERED SEQADV 1FMH LYS B 6 UNP P03069 GLU 254 ENGINEERED SEQADV 1FMH LYS B 7 UNP P03069 ASP 255 ENGINEERED SEQADV 1FMH ARG B 8 UNP P03069 LYS 256 ENGINEERED SEQADV 1FMH GLN B 10 UNP P03069 GLU 258 ENGINEERED SEQADV 1FMH ALA B 11 UNP P03069 GLU 259 ENGINEERED SEQADV 1FMH LYS B 13 UNP P03069 LEU 261 ENGINEERED SEQADV 1FMH ALA B 14 UNP P03069 SER 262 ENGINEERED SEQADV 1FMH ARG B 15 UNP P03069 LYS 263 ENGINEERED SEQADV 1FMH ALA B 18 UNP P03069 HIS 266 ENGINEERED SEQADV 1FMH ALA B 19 UNP P03069 LEU 267 ENGINEERED SEQADV 1FMH LYS B 20 UNP P03069 GLU 268 ENGINEERED SEQADV 1FMH GLN B 21 UNP P03069 ASN 269 ENGINEERED SEQADV 1FMH LYS B 22 UNP P03069 GLU 270 ENGINEERED SEQADV 1FMH GLN B 24 UNP P03069 ALA 272 ENGINEERED SEQADV 1FMH ALA B 25 UNP P03069 ARG 273 ENGINEERED SEQADV 1FMH ARG B 27 UNP P03069 LYS 275 ENGINEERED SEQADV 1FMH HIS B 28 UNP P03069 LYS 276 ENGINEERED SEQADV 1FMH LYS B 29 UNP P03069 LEU 277 ENGINEERED SEQADV 1FMH CYS B 30 UNP P03069 VAL 278 ENGINEERED SEQRES 1 A 33 ACE GLU VAL ALA GLN LEU GLU LYS GLU VAL ALA GLN ALA SEQRES 2 A 33 GLU ALA GLU ASN TYR GLN LEU GLU GLN GLU VAL ALA GLN SEQRES 3 A 33 LEU GLU HIS GLU CYS GLY NH2 SEQRES 1 B 33 ACE GLU VAL GLN ALA LEU LYS LYS ARG VAL GLN ALA LEU SEQRES 2 B 33 LYS ALA ARG ASN TYR ALA ALA LYS GLN LYS VAL GLN ALA SEQRES 3 B 33 LEU ARG HIS LYS CYS GLY NH2 HET ACE A 0 6 HET NH2 A 32 3 HET ACE B 0 6 HET NH2 B 32 3 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP FORMUL 1 ACE 2(C2 H4 O) FORMUL 1 NH2 2(H2 N) HELIX 1 1 GLU A 1 CYS A 30 1 30 HELIX 2 2 GLU B 1 GLY B 31 1 31 SSBOND 1 CYS A 30 CYS B 30 1555 1555 2.03 LINK C ACE A 0 N GLU A 1 1555 1555 1.33 LINK C GLY A 31 N NH2 A 32 1555 1555 1.33 LINK C ACE B 0 N GLU B 1 1555 1555 1.32 LINK C GLY B 31 N NH2 B 32 1555 1555 1.33 SITE 1 AC3 2 CYS A 30 GLY A 31 SITE 1 AC4 2 CYS B 30 GLY B 31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 123 0 4 2 0 0 2 6 0 0 0 6 END