HEADER NEUROPEPTIDE 03-JUL-00 1F8P TITLE PORCINE NEUROPEPTIDE Y BOUND TO DPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROPEPTIDE Y (PNPY); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: CHEMICALLY SYNTHESIZED SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: OCCURS IN NERVOUS SYSTEM OF PIGS KEYWDS HELIX, NEUROPEPTIDE EXPDTA SOLUTION NMR NUMMDL 17 AUTHOR R.BADER,A.G.BECK-SICKINGER,O.ZERBE REVDAT 2 24-FEB-09 1F8P 1 VERSN REVDAT 1 03-JAN-01 1F8P 0 JRNL AUTH R.BADER,A.BETTIO,A.G.BECK-SICKINGER,O.ZERBE JRNL TITL STRUCTURE AND DYNAMICS OF MICELLE-BOUND JRNL TITL 2 NEUROPEPTIDE Y: COMPARISON WITH UNLIGATED NPY AND JRNL TITL 3 IMPLICATIONS FOR RECEPTOR SELECTION. JRNL REF J.MOL.BIOL. V. 305 307 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11124908 JRNL DOI 10.1006/JMBI.2000.4264 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 4.1 REMARK 3 AUTHORS : KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 344 NOE-BASED DISTANCE RESTRAINTS REMARK 3 145 DIHEDRAL ANGLE CONSTRAINTS REMARK 4 REMARK 4 1F8P COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-00. REMARK 100 THE RCSB ID CODE IS RCSB011380. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 3MM PNPY, 300MM D-38 DPC; 3MM REMARK 210 PNPY, 300MM D-38 DPC REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, E-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.1, XEASY 1.3.13, REMARK 210 DYANA 1.5 REMARK 210 METHOD USED : SIMMULATED ANNEALING IN REMARK 210 TORSION ANGLE SPACE REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 17 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY,STRUCTURES REMARK 210 WITH FAVORABLE NON-BOND REMARK 210 ENERGY,STRUCTURES WITH THE REMARK 210 LEAST RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY,TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: 75 MS NOESY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 15 GLU A 10 CD GLU A 10 OE2 -0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 7 ASP A 16 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 12 ASP A 6 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 13 TYR A 36 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 15 ASP A 16 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 16 TYR A 21 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 11 94.06 -177.00 REMARK 500 1 ALA A 12 156.09 -49.35 REMARK 500 1 TYR A 27 -74.07 -67.73 REMARK 500 2 SER A 3 -56.81 -155.29 REMARK 500 2 LYS A 4 65.54 -173.70 REMARK 500 2 ASP A 6 -64.10 -141.19 REMARK 500 2 ASN A 7 146.86 -176.79 REMARK 500 2 GLU A 10 -155.44 -121.77 REMARK 500 2 ASP A 11 54.37 -96.81 REMARK 500 2 ALA A 12 60.67 64.64 REMARK 500 2 ALA A 14 -60.05 80.03 REMARK 500 2 TYR A 27 -72.61 -63.42 REMARK 500 2 ARG A 35 -75.77 -66.66 REMARK 500 3 SER A 3 125.82 -173.60 REMARK 500 3 ASP A 6 -62.77 -123.70 REMARK 500 3 ASN A 7 95.41 178.14 REMARK 500 3 ASP A 11 79.01 -173.42 REMARK 500 3 ALA A 14 -51.57 73.30 REMARK 500 3 TYR A 27 -74.07 -66.06 REMARK 500 3 ARG A 35 -76.68 -51.88 REMARK 500 4 LYS A 4 -58.24 171.78 REMARK 500 4 ASP A 11 -50.53 80.59 REMARK 500 4 ALA A 14 -49.78 77.49 REMARK 500 4 TYR A 27 -72.18 -58.80 REMARK 500 5 ASP A 6 174.87 68.02 REMARK 500 5 ASN A 7 85.43 59.99 REMARK 500 5 ASP A 11 89.97 -170.50 REMARK 500 5 ALA A 14 -58.07 77.01 REMARK 500 5 TYR A 27 -70.00 -62.81 REMARK 500 5 ARG A 35 -73.65 -90.82 REMARK 500 6 SER A 3 78.34 61.68 REMARK 500 6 GLU A 10 144.34 -174.79 REMARK 500 6 ASP A 11 87.20 61.92 REMARK 500 6 PRO A 13 -167.90 -75.73 REMARK 500 6 ALA A 14 -63.74 75.35 REMARK 500 6 TYR A 27 -73.78 -60.49 REMARK 500 7 LYS A 4 90.05 -37.40 REMARK 500 7 ASP A 6 102.99 -179.30 REMARK 500 7 ASN A 7 130.29 73.45 REMARK 500 7 GLU A 10 77.73 42.89 REMARK 500 7 ASP A 11 83.66 60.60 REMARK 500 7 ALA A 14 -61.40 74.26 REMARK 500 7 TYR A 27 -72.73 -60.97 REMARK 500 7 ARG A 35 -85.09 -115.33 REMARK 500 8 PRO A 2 -77.11 -82.13 REMARK 500 8 SER A 3 -48.46 -173.19 REMARK 500 8 LYS A 4 79.39 -170.78 REMARK 500 8 PRO A 5 82.36 -68.89 REMARK 500 8 ASP A 6 65.50 -175.16 REMARK 500 8 PRO A 8 -166.64 -69.44 REMARK 500 8 GLU A 10 -155.62 -121.22 REMARK 500 8 ALA A 14 -60.32 72.47 REMARK 500 8 TYR A 27 -71.50 -60.16 REMARK 500 8 ARG A 35 53.76 -175.07 REMARK 500 9 ASN A 7 93.44 53.89 REMARK 500 9 GLU A 10 91.21 61.05 REMARK 500 9 ASP A 11 -64.53 -128.84 REMARK 500 9 ALA A 14 -53.16 72.85 REMARK 500 9 TYR A 27 -76.60 -60.07 REMARK 500 10 SER A 3 164.33 69.98 REMARK 500 10 ASP A 6 -66.45 79.30 REMARK 500 10 ASN A 7 121.73 78.98 REMARK 500 10 ASP A 11 -46.28 -177.88 REMARK 500 10 ALA A 14 -61.48 79.89 REMARK 500 10 TYR A 27 -76.32 -56.44 REMARK 500 11 SER A 3 -80.76 -158.38 REMARK 500 11 PRO A 5 -73.99 -73.15 REMARK 500 11 ASP A 6 -51.04 -164.80 REMARK 500 11 ASN A 7 88.08 63.49 REMARK 500 11 GLU A 10 -154.76 -135.84 REMARK 500 11 ASP A 11 54.74 -144.30 REMARK 500 11 TYR A 27 -71.33 -56.60 REMARK 500 11 ARG A 35 115.76 176.62 REMARK 500 12 LYS A 4 78.92 57.48 REMARK 500 12 ASN A 7 95.38 -175.53 REMARK 500 12 GLU A 10 -157.23 -126.62 REMARK 500 12 ASP A 11 88.03 178.29 REMARK 500 12 ALA A 14 -55.43 73.22 REMARK 500 12 TYR A 27 -72.07 -61.68 REMARK 500 12 ARG A 35 -73.14 -54.05 REMARK 500 13 SER A 3 70.97 -160.93 REMARK 500 13 ASP A 6 -74.60 74.00 REMARK 500 13 GLU A 10 -166.72 -126.62 REMARK 500 13 ASP A 11 99.76 177.99 REMARK 500 13 TYR A 27 -71.17 -59.71 REMARK 500 13 ARG A 35 -97.78 -84.34 REMARK 500 14 PRO A 2 -83.01 -84.77 REMARK 500 14 SER A 3 -53.24 175.26 REMARK 500 14 LYS A 4 71.03 50.15 REMARK 500 14 ASN A 7 88.36 68.95 REMARK 500 14 ALA A 12 150.37 70.20 REMARK 500 14 ALA A 14 -59.77 67.37 REMARK 500 14 TYR A 27 -70.28 -59.51 REMARK 500 14 ARG A 35 -87.68 -85.44 REMARK 500 15 SER A 3 -76.09 -139.93 REMARK 500 15 LYS A 4 99.61 -41.69 REMARK 500 15 ASP A 6 156.84 -46.55 REMARK 500 15 GLU A 10 91.16 -162.11 REMARK 500 15 ASP A 11 -77.95 -163.89 REMARK 500 15 ALA A 14 -53.99 74.38 REMARK 500 15 ILE A 28 -31.36 -36.06 REMARK 500 15 ARG A 35 108.37 173.29 REMARK 500 16 SER A 3 80.78 43.66 REMARK 500 16 PRO A 5 -72.58 -68.03 REMARK 500 16 ASN A 7 94.28 -175.27 REMARK 500 16 GLU A 10 100.40 178.74 REMARK 500 16 ASP A 11 95.27 56.35 REMARK 500 16 ALA A 12 77.55 61.57 REMARK 500 16 ARG A 35 -92.95 -75.79 REMARK 500 17 LYS A 4 150.91 -43.95 REMARK 500 17 ASP A 11 -74.38 -71.13 REMARK 500 17 ALA A 14 -63.38 72.46 REMARK 500 17 TYR A 27 -74.87 -67.04 REMARK 500 17 ARG A 35 -98.54 -81.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 TYR A 20 0.12 SIDE_CHAIN REMARK 500 2 TYR A 21 0.13 SIDE_CHAIN REMARK 500 4 TYR A 1 0.11 SIDE_CHAIN REMARK 500 5 TYR A 1 0.11 SIDE_CHAIN REMARK 500 5 TYR A 27 0.06 SIDE_CHAIN REMARK 500 5 TYR A 36 0.09 SIDE_CHAIN REMARK 500 8 TYR A 1 0.11 SIDE_CHAIN REMARK 500 8 TYR A 20 0.10 SIDE_CHAIN REMARK 500 9 TYR A 27 0.09 SIDE_CHAIN REMARK 500 10 TYR A 20 0.10 SIDE_CHAIN REMARK 500 10 TYR A 21 0.08 SIDE_CHAIN REMARK 500 10 TYR A 27 0.15 SIDE_CHAIN REMARK 500 11 TYR A 1 0.08 SIDE_CHAIN REMARK 500 11 TYR A 20 0.07 SIDE_CHAIN REMARK 500 12 TYR A 21 0.07 SIDE_CHAIN REMARK 500 12 TYR A 27 0.09 SIDE_CHAIN REMARK 500 13 TYR A 21 0.08 SIDE_CHAIN REMARK 500 13 TYR A 27 0.14 SIDE_CHAIN REMARK 500 13 TYR A 36 0.08 SIDE_CHAIN REMARK 500 14 TYR A 21 0.08 SIDE_CHAIN REMARK 500 14 TYR A 36 0.09 SIDE_CHAIN REMARK 500 16 TYR A 20 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 37 DBREF 1F8P A 1 36 UNP P01304 NEUY_PIG 1 36 SEQRES 1 A 37 TYR PRO SER LYS PRO ASP ASN PRO GLY GLU ASP ALA PRO SEQRES 2 A 37 ALA GLU ASP LEU ALA ARG TYR TYR SER ALA LEU ARG HIS SEQRES 3 A 37 TYR ILE ASN LEU ILE THR ARG GLN ARG TYR NH2 HET NH2 A 37 3 HETNAM NH2 AMINO GROUP FORMUL 1 NH2 H2 N HELIX 1 1 ASP A 16 TYR A 36 1 21 LINK C TYR A 36 N NH2 A 37 1555 1555 1.32 SITE 1 AC1 1 TYR A 36 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 270 0 1 1 0 0 1 6 0 0 0 3 END