HEADER RNA 27-JUN-00 1F7G TITLE SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U TITLE 2 MUTANT OLIGORIBONUCLEOTIDE, ENSEMBLE OF 17 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNASE P RNA RIBOZYME, P4 DOMAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: P4 STEM; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHESIZED FROM DNA OLIGONUCLEOTIDE SOURCE 4 TEMPLATE BY T7 RNA POLYMERASE KEYWDS RIBONUCLEASE P, RIBOZYME, TRANSFER RNA PROCESSING, P4 STEM, KEYWDS 2 C70U MUTANT, METAL BINDING SITE EXPDTA SOLUTION NMR NUMMDL 17 AUTHOR M.SCHMITZ,I.TINOCO JR. REVDAT 2 24-FEB-09 1F7G 1 VERSN REVDAT 1 09-OCT-00 1F7G 0 JRNL AUTH M.SCHMITZ,I.TINOCO JR. JRNL TITL SOLUTION STRUCTURE AND METAL-ION BINDING OF THE P4 JRNL TITL 2 ELEMENT FROM BACTERIAL RNASE P RNA. JRNL REF RNA V. 6 1212 2000 JRNL REFN ISSN 1355-8382 JRNL PMID 10999599 JRNL DOI 10.1017/S1355838200000881 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.841 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 268 NOE DERIVED DISTANCE CONSTRAINTS, 171 DIHEDRAL REMARK 3 RESTRAINTS AND 49 DISTANCE RESTRAINTS FROM HYDROGEN BONDS. THE REMARK 3 17 STRUCTURES WITH LOWEST NOE AND DIHEDRAL ANGLE VIOLATION REMARK 3 ENERGIES ARE PRESENTED REMARK 4 REMARK 4 1F7G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-00. REMARK 100 THE RCSB ID CODE IS RCSB011336. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288; 288; 288; 288 REMARK 210 PH : 6.5; 6.5; 6.5; 6.5 REMARK 210 IONIC STRENGTH : 100 MM NA; 100 MM NA; 100 MM REMARK 210 NA, 10 MM MG; 100 MM NA, 3 MM REMARK 210 CO(NH3)6 REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM P4M RNA; 100 MM SODIUM REMARK 210 CHLORIDE; 10 MM PHOSPHATE REMARK 210 BUFFER; 90% H2O, 10% D2O; 2 MM REMARK 210 P4M RNA; 100 MM SODIUM REMARK 210 CHLORIDE; 10 MM PHOSPHATE REMARK 210 BUFFER; 99.96% D2O; 2 MM P4M REMARK 210 RNA; 100 MM SODIUM CHLORIDE; REMARK 210 10 MM MAGNESIUM CHLORIDE; 10 REMARK 210 MM PHOSPHATE BUFFER; 90% H2O, REMARK 210 10% D2O; 2 MM P4M RNA; 100 MM REMARK 210 SODIUM CHLORIDE; 3 MM REMARK 210 HEXAMMINE COBALT CHLORIDE; 10 REMARK 210 MM PHOSPHATE BUFFER; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, 31P-1H- REMARK 210 COSY, 13C-1H-HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX, DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, FELIX 95, X-PLOR REMARK 210 3.841 REMARK 210 METHOD USED : RESTRAINED MOLECULAR REMARK 210 DYNAMICS; SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 17 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 5 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES AND 13C AND 31P HETERONUCLEAR REMARK 210 TECHNIQUES AT NATURAL ABUNDANCE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F6Z RELATED DB: PDB REMARK 900 1F6Z CONTAINS THE AVERAGE STRUCTURE CALCULATED FROM THIS REMARK 900 ENSEMBLE DBREF 1F7G A 1 27 PDB 1F7G 1F7G 1 27 SEQRES 1 A 27 G G A A G U U C G G U C U SEQRES 2 A 27 U C G G A C C G G C U U C SEQRES 3 A 27 C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 76 0 0 0 0 0 0 6 0 0 0 3 END