HEADER LIPID BINDING PROTEIN 18-JUN-00 1F5Y TITLE NMR STRUCTURE OF A CONCATEMER OF THE FIRST AND SECOND TITLE 2 LIGAND-BINDING MODULES OF THE HUMAN LDL RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOW-DENSITY LIPOPROTEIN RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND-BINDING MODULES 1-2; COMPND 5 SYNONYM: LDL RECEPTOR; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: LIGAND-BINDING MODULE CONCATEMER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: LIVER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-2T, GST-FUSION PROTEIN KEYWDS BETA HAIRPIN, 3-10 HELIX, CALCIUM BINDING, LIPID BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.D.KURNIAWAN,A.R.ATKINS,I.M.BRERETON,P.A.KROON,R.SMITH REVDAT 2 24-FEB-09 1F5Y 1 VERSN REVDAT 1 30-AUG-00 1F5Y 0 JRNL AUTH N.D.KURNIAWAN,A.R.ATKINS,S.BIERI,C.J.BROWN, JRNL AUTH 2 I.M.BRERETON,P.A.KROON,R.SMITH JRNL TITL NMR STRUCTURE OF A CONCATEMER OF THE FIRST AND JRNL TITL 2 SECOND LIGAND-BINDING MODULES OF THE HUMAN JRNL TITL 3 LOW-DENSITY LIPOPROTEIN RECEPTOR. JRNL REF PROTEIN SCI. V. 9 1282 2000 JRNL REFN ISSN 0961-8368 JRNL PMID 10933493 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.R.ATKINS,I.M.BRERETON,P.A.KROON,H.T.LEE,R.SMITH REMARK 1 TITL CALCIUM IS ESSENTIAL FOR THE STRUCTURAL INTEGRITY REMARK 1 TITL 2 OF THE CYSTEINE-RICH, LIGAND-BINDING REPEAT OF THE REMARK 1 TITL 3 LOW-DENSITY LIPOPROTEIN RECEPTOR REMARK 1 REF BIOCHEMISTRY V. 37 1662 1998 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI972529N REMARK 1 REFERENCE 2 REMARK 1 AUTH S.BIERI,A.R.ATKINS,H.T.LEE,D.J.WINZOR,R.SMITH, REMARK 1 AUTH 2 P.A.KROON REMARK 1 TITL FOLDING, CALCIUM BINDING, AND STRUCTURAL REMARK 1 TITL 2 CHARACTERIZATION OF A CONCATEMER OF THE FIRST AND REMARK 1 TITL 3 SECOND LIGAND-BINDING MODULES OF THE LOW-DENSITY REMARK 1 TITL 4 LIPOPROTEIN RECEPTOR REMARK 1 REF BIOCHEMISTRY V. 37 10994 1998 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI980452C REMARK 1 REFERENCE 3 REMARK 1 AUTH N.L.DALY,M.J.SCANLON,J.T.DJORDJEVIC,P.A.KROON, REMARK 1 AUTH 2 R.SMITH REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF A CYSTEINE-RICH REMARK 1 TITL 2 REPEAT FROM THE LOW-DENSITY LIPOPROTEIN RECEPTOR REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 92 6334 1995 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 4 REMARK 1 AUTH N.L.DALY,J.T.DJORDJEVIC,P.A.KROON,R.SMITH REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF THE SECOND REMARK 1 TITL 2 CYSTEINE-RICH REPEAT FROM THE HUMAN LOW-DENSITY REMARK 1 TITL 3 LIPOPROTEIN RECEPTOR REMARK 1 REF BIOCHEMISTRY V. 34 14474 1995 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.85 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NMR INPUTS: NOE TOTAL 889: 286 REMARK 3 INTRA, 273 SEQUENTIAL, 184 MEDIUM, 146 LONG RANGE; OTHERS: 32 REMARK 3 DIHEDRAL RESTRAINTS, 13 H-BONDS, 12 CALCIUM COORDINATION REMARK 4 REMARK 4 1F5Y COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-00. REMARK 100 THE RCSB ID CODE IS RCSB011283. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 0.045 REMARK 210 PRESSURE : ATMOSPHERIC ATM REMARK 210 SAMPLE CONTENTS : 1 MM LB1-2, 15 MM CACL2, PH REMARK 210 5.5; 1 MM LB1-2, 15 MM CACL2, REMARK 210 PH 5.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D-TOCSY, DQF-COSY, 2D NOESY, REMARK 210 E-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2, XEASY 1.4, DYANA REMARK 210 1.5, MOLMOL 2.6 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 (DYANA) FOLLOWED BY SIMULATED REMARK 210 ANNEALING AND MOLECULAR REMARK 210 DYNAMICS (X-PLOR) FOR CALCIUM REMARK 210 COORDINATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TRP A 25 CD1 - NE1 - CE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 1 TRP A 25 NE1 - CE2 - CZ2 ANGL. DEV. = 7.8 DEGREES REMARK 500 1 CYS A 27 CA - CB - SG ANGL. DEV. = 8.6 DEGREES REMARK 500 1 TRP A 68 CD1 - NE1 - CE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 2 TRP A 25 CD1 - NE1 - CE2 ANGL. DEV. = 7.2 DEGREES REMARK 500 2 TRP A 25 NE1 - CE2 - CZ2 ANGL. DEV. = 7.7 DEGREES REMARK 500 2 TRP A 68 CD1 - NE1 - CE2 ANGL. DEV. = 7.4 DEGREES REMARK 500 3 TRP A 25 CD1 - NE1 - CE2 ANGL. DEV. = 7.1 DEGREES REMARK 500 3 TRP A 25 NE1 - CE2 - CZ2 ANGL. DEV. = 7.9 DEGREES REMARK 500 3 CYS A 27 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 3 TRP A 68 CD1 - NE1 - CE2 ANGL. DEV. = 7.4 DEGREES REMARK 500 3 ARG A 69 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 4 TRP A 25 CD1 - NE1 - CE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 4 TRP A 25 NE1 - CE2 - CZ2 ANGL. DEV. = 7.6 DEGREES REMARK 500 4 CYS A 49 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 4 TRP A 68 CD1 - NE1 - CE2 ANGL. DEV. = 7.5 DEGREES REMARK 500 4 TRP A 68 NE1 - CE2 - CZ2 ANGL. DEV. = 6.8 DEGREES REMARK 500 5 TRP A 25 CD1 - NE1 - CE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 5 TRP A 25 NE1 - CE2 - CZ2 ANGL. DEV. = 7.9 DEGREES REMARK 500 5 TRP A 68 CD1 - NE1 - CE2 ANGL. DEV. = 7.4 DEGREES REMARK 500 5 TRP A 68 NE1 - CE2 - CZ2 ANGL. DEV. = 7.1 DEGREES REMARK 500 5 ASP A 71 CB - CG - OD1 ANGL. DEV. = -9.2 DEGREES REMARK 500 6 TRP A 25 CD1 - NE1 - CE2 ANGL. DEV. = 7.4 DEGREES REMARK 500 6 TRP A 25 NE1 - CE2 - CZ2 ANGL. DEV. = 7.6 DEGREES REMARK 500 6 CYS A 27 CA - CB - SG ANGL. DEV. = 8.8 DEGREES REMARK 500 6 ARG A 59 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 6 TRP A 68 CD1 - NE1 - CE2 ANGL. DEV. = 7.4 DEGREES REMARK 500 7 TRP A 25 CD1 - NE1 - CE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 7 TRP A 25 NE1 - CE2 - CZ2 ANGL. DEV. = 8.0 DEGREES REMARK 500 7 CYS A 44 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 7 TRP A 68 CD1 - NE1 - CE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 7 TRP A 68 NE1 - CE2 - CZ2 ANGL. DEV. = 6.8 DEGREES REMARK 500 7 ASP A 71 CB - CG - OD1 ANGL. DEV. = -9.4 DEGREES REMARK 500 8 TRP A 25 CD1 - NE1 - CE2 ANGL. DEV. = 7.2 DEGREES REMARK 500 8 TRP A 25 NE1 - CE2 - CZ2 ANGL. DEV. = 7.7 DEGREES REMARK 500 8 CYS A 27 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 8 TRP A 68 CG - CD1 - NE1 ANGL. DEV. = -6.2 DEGREES REMARK 500 8 TRP A 68 CD1 - NE1 - CE2 ANGL. DEV. = 7.5 DEGREES REMARK 500 8 TRP A 68 NE1 - CE2 - CZ2 ANGL. DEV. = 7.3 DEGREES REMARK 500 8 ASP A 71 CB - CG - OD1 ANGL. DEV. = -9.5 DEGREES REMARK 500 8 CYS A 76 CA - CB - SG ANGL. DEV. = 12.0 DEGREES REMARK 500 9 CYS A 15 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 9 TRP A 25 CD1 - NE1 - CE2 ANGL. DEV. = 7.1 DEGREES REMARK 500 9 TRP A 25 NE1 - CE2 - CZ2 ANGL. DEV. = 8.1 DEGREES REMARK 500 9 CYS A 27 CA - CB - SG ANGL. DEV. = 9.6 DEGREES REMARK 500 9 CYS A 44 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 9 ARG A 59 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 9 TRP A 68 CD1 - NE1 - CE2 ANGL. DEV. = 7.5 DEGREES REMARK 500 9 TRP A 68 NE1 - CE2 - CZ2 ANGL. DEV. = 6.7 DEGREES REMARK 500 10 TRP A 25 CD1 - NE1 - CE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 108 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -48.98 -143.90 REMARK 500 1 VAL A 4 163.36 44.91 REMARK 500 1 GLU A 9 42.41 -148.75 REMARK 500 1 ARG A 10 -118.35 -136.74 REMARK 500 1 ASP A 35 -55.51 -130.46 REMARK 500 1 SER A 40 38.04 -87.97 REMARK 500 1 GLN A 41 18.49 52.44 REMARK 500 1 THR A 43 46.26 -155.34 REMARK 500 1 SER A 46 -166.66 -101.17 REMARK 500 1 VAL A 47 58.94 34.12 REMARK 500 1 THR A 48 83.82 56.42 REMARK 500 1 LYS A 50 90.41 -161.89 REMARK 500 1 SER A 51 45.13 -167.56 REMARK 500 1 SER A 80 7.90 -62.38 REMARK 500 1 GLU A 82 -51.88 -158.90 REMARK 500 2 SER A 2 -48.22 -140.85 REMARK 500 2 ALA A 3 31.55 -86.54 REMARK 500 2 ARG A 7 -158.80 -98.08 REMARK 500 2 GLU A 9 43.94 -147.63 REMARK 500 2 ARG A 10 -119.92 -140.68 REMARK 500 2 ASP A 35 -56.56 -129.14 REMARK 500 2 SER A 40 32.74 -92.25 REMARK 500 2 THR A 43 40.69 -145.48 REMARK 500 2 LEU A 45 29.82 -78.26 REMARK 500 2 SER A 46 -102.14 -135.50 REMARK 500 2 THR A 48 56.56 33.49 REMARK 500 2 LYS A 50 77.57 -166.25 REMARK 500 2 SER A 51 41.90 -153.49 REMARK 500 2 PHE A 67 -9.73 -56.12 REMARK 500 2 CYS A 70 39.33 38.32 REMARK 500 2 GLU A 82 -62.20 -131.72 REMARK 500 3 ALA A 3 116.34 63.89 REMARK 500 3 VAL A 4 154.91 -46.63 REMARK 500 3 GLU A 9 43.73 -149.26 REMARK 500 3 ARG A 10 -118.84 -138.01 REMARK 500 3 ASP A 35 -54.52 -130.20 REMARK 500 3 SER A 40 41.51 -89.23 REMARK 500 3 GLN A 41 27.43 46.71 REMARK 500 3 THR A 43 22.00 -152.73 REMARK 500 3 SER A 46 -86.32 -126.87 REMARK 500 3 LYS A 50 73.41 -168.38 REMARK 500 3 SER A 51 44.40 -150.80 REMARK 500 3 ASN A 61 64.40 -109.83 REMARK 500 3 GLN A 66 -35.54 -25.81 REMARK 500 3 SER A 80 31.90 -77.98 REMARK 500 3 GLU A 82 -60.21 -131.52 REMARK 500 4 ASP A 6 -164.97 -74.39 REMARK 500 4 GLU A 9 43.56 -147.82 REMARK 500 4 ARG A 10 -117.14 -139.04 REMARK 500 4 ASP A 35 -53.61 -132.50 REMARK 500 4 SER A 40 35.38 -91.18 REMARK 500 4 GLN A 41 20.64 44.96 REMARK 500 4 SER A 46 -166.88 56.50 REMARK 500 4 VAL A 47 78.51 38.38 REMARK 500 4 CYS A 49 -83.56 -82.45 REMARK 500 4 LYS A 50 89.60 51.48 REMARK 500 4 ASP A 53 -163.50 -79.60 REMARK 500 4 GLN A 66 -36.50 -23.91 REMARK 500 4 PHE A 67 0.18 -68.66 REMARK 500 4 SER A 80 20.62 -73.29 REMARK 500 4 GLU A 82 -64.61 -134.15 REMARK 500 5 ALA A 3 -44.30 -163.42 REMARK 500 5 GLU A 9 22.78 -160.62 REMARK 500 5 ARG A 10 -114.93 -141.00 REMARK 500 5 ASP A 35 -53.88 -126.99 REMARK 500 5 THR A 43 49.66 -149.55 REMARK 500 5 VAL A 47 97.43 34.13 REMARK 500 5 CYS A 49 168.52 -49.81 REMARK 500 5 SER A 51 37.13 -164.37 REMARK 500 5 ASN A 61 38.51 -85.37 REMARK 500 5 TRP A 68 42.34 -104.30 REMARK 500 5 SER A 80 24.80 -72.93 REMARK 500 5 GLU A 82 -57.40 -137.88 REMARK 500 6 SER A 2 -57.43 -158.83 REMARK 500 6 ASP A 6 5.00 59.33 REMARK 500 6 GLU A 9 47.46 -153.79 REMARK 500 6 ARG A 10 -120.22 -141.04 REMARK 500 6 ASP A 35 -52.33 -146.03 REMARK 500 6 SER A 40 30.92 -88.08 REMARK 500 6 GLN A 41 18.89 47.25 REMARK 500 6 THR A 43 -124.01 -124.82 REMARK 500 6 CYS A 44 -4.58 82.61 REMARK 500 6 LEU A 45 35.36 -79.00 REMARK 500 6 SER A 46 -62.44 -144.18 REMARK 500 6 THR A 48 81.92 50.80 REMARK 500 6 CYS A 49 -169.95 -65.56 REMARK 500 6 LYS A 50 84.83 -169.62 REMARK 500 6 SER A 51 42.89 -153.51 REMARK 500 6 VAL A 60 -157.54 -130.25 REMARK 500 6 ASN A 61 87.77 -166.39 REMARK 500 6 ARG A 62 135.82 -172.59 REMARK 500 6 GLN A 66 -36.18 -24.14 REMARK 500 6 CYS A 70 40.51 27.84 REMARK 500 6 SER A 80 30.89 -76.11 REMARK 500 7 GLU A 9 47.19 -155.50 REMARK 500 7 ARG A 10 -120.08 -141.43 REMARK 500 7 GLN A 34 33.38 74.95 REMARK 500 7 ASP A 35 -52.72 -134.90 REMARK 500 7 SER A 40 42.83 -89.99 REMARK 500 7 GLN A 41 16.35 51.34 REMARK 500 7 THR A 43 34.20 -144.18 REMARK 500 7 VAL A 47 87.05 32.33 REMARK 500 7 CYS A 49 176.46 -55.34 REMARK 500 7 LYS A 50 87.27 -165.72 REMARK 500 7 SER A 51 41.71 -164.52 REMARK 500 7 TRP A 68 42.83 -102.10 REMARK 500 7 SER A 80 30.75 -74.27 REMARK 500 7 GLU A 82 -57.33 -137.40 REMARK 500 8 ALA A 3 70.31 50.89 REMARK 500 8 GLU A 9 43.79 -148.90 REMARK 500 8 ARG A 10 -118.29 -140.75 REMARK 500 8 ASP A 35 -55.55 -137.44 REMARK 500 8 SER A 40 37.97 -85.72 REMARK 500 8 GLN A 41 56.88 34.46 REMARK 500 8 CYS A 44 37.94 -98.89 REMARK 500 8 SER A 46 -159.05 -134.47 REMARK 500 8 VAL A 47 -78.54 60.99 REMARK 500 8 THR A 48 42.69 -141.83 REMARK 500 8 SER A 51 33.24 39.14 REMARK 500 8 ASP A 53 -169.09 -77.79 REMARK 500 8 PHE A 54 90.76 -51.98 REMARK 500 8 VAL A 60 -156.79 -133.20 REMARK 500 8 CYS A 70 48.47 73.44 REMARK 500 8 SER A 80 28.76 -76.05 REMARK 500 9 ASP A 6 97.60 -62.25 REMARK 500 9 GLU A 9 46.51 -157.40 REMARK 500 9 ARG A 10 -122.07 -146.35 REMARK 500 9 GLN A 34 31.88 72.02 REMARK 500 9 ASP A 35 -49.15 -136.64 REMARK 500 9 SER A 40 36.71 -88.33 REMARK 500 9 GLN A 41 19.09 51.99 REMARK 500 9 THR A 43 -122.63 -139.90 REMARK 500 9 VAL A 47 -21.27 55.65 REMARK 500 9 THR A 48 42.07 -89.25 REMARK 500 9 CYS A 49 -174.07 43.40 REMARK 500 9 LYS A 50 133.32 -37.14 REMARK 500 9 SER A 51 31.88 -89.70 REMARK 500 9 GLN A 66 -40.38 -18.15 REMARK 500 9 ASP A 75 -43.00 -132.98 REMARK 500 9 SER A 80 22.77 -75.02 REMARK 500 9 ASP A 81 15.75 -140.73 REMARK 500 9 GLU A 82 -64.56 -126.32 REMARK 500 10 GLU A 9 49.93 -158.35 REMARK 500 10 ARG A 10 -122.15 -141.40 REMARK 500 10 GLN A 34 32.67 72.45 REMARK 500 10 ASP A 35 -51.20 -136.49 REMARK 500 10 SER A 40 34.16 -89.85 REMARK 500 10 GLN A 41 29.81 44.54 REMARK 500 10 THR A 43 -100.78 -126.23 REMARK 500 10 SER A 46 -100.42 -85.93 REMARK 500 10 THR A 48 49.11 34.42 REMARK 500 10 LYS A 50 -154.98 -131.42 REMARK 500 10 SER A 80 33.26 -77.85 REMARK 500 11 SER A 2 44.59 -140.60 REMARK 500 11 GLU A 9 44.72 -152.54 REMARK 500 11 ARG A 10 -121.68 -136.69 REMARK 500 11 ASP A 35 -53.82 -141.30 REMARK 500 11 SER A 40 31.09 -87.67 REMARK 500 11 GLN A 41 10.14 51.48 REMARK 500 11 THR A 43 51.04 -151.00 REMARK 500 11 SER A 46 -179.31 -68.20 REMARK 500 11 VAL A 47 47.62 36.17 REMARK 500 11 THR A 48 89.34 53.70 REMARK 500 11 CYS A 49 169.57 -46.34 REMARK 500 11 LYS A 50 63.50 -151.00 REMARK 500 11 SER A 51 50.15 -152.48 REMARK 500 11 GLN A 66 -39.16 -24.52 REMARK 500 12 ALA A 3 91.84 56.23 REMARK 500 12 VAL A 4 167.14 61.04 REMARK 500 12 GLU A 9 42.82 -147.35 REMARK 500 12 ARG A 10 -117.78 -141.33 REMARK 500 12 ASP A 35 -53.55 -135.99 REMARK 500 12 SER A 40 40.30 -90.06 REMARK 500 12 GLN A 41 31.81 36.44 REMARK 500 12 THR A 43 -146.51 -124.96 REMARK 500 12 CYS A 44 20.27 45.65 REMARK 500 12 LEU A 45 -53.43 -163.51 REMARK 500 12 SER A 80 21.72 -72.80 REMARK 500 12 GLU A 82 -61.31 -134.27 REMARK 500 13 SER A 2 -151.00 54.53 REMARK 500 13 GLU A 9 41.88 -144.53 REMARK 500 13 ARG A 10 -117.86 -141.20 REMARK 500 13 GLN A 34 32.33 74.09 REMARK 500 13 ASP A 35 -52.35 -134.54 REMARK 500 13 SER A 40 30.43 -90.28 REMARK 500 13 THR A 43 -119.33 -114.14 REMARK 500 13 SER A 46 88.35 60.05 REMARK 500 13 VAL A 47 -60.95 38.36 REMARK 500 13 THR A 48 49.56 -76.80 REMARK 500 13 CYS A 49 -153.04 37.46 REMARK 500 13 SER A 51 31.85 -88.25 REMARK 500 13 ASP A 77 -72.66 -32.36 REMARK 500 13 SER A 80 25.98 -76.38 REMARK 500 13 GLU A 82 -61.54 -129.09 REMARK 500 14 ALA A 3 86.84 55.79 REMARK 500 14 VAL A 4 -163.61 -70.69 REMARK 500 14 GLU A 9 43.91 -148.09 REMARK 500 14 ARG A 10 -118.78 -140.68 REMARK 500 14 ASP A 35 -56.58 -151.03 REMARK 500 14 GLN A 41 37.74 38.98 REMARK 500 14 THR A 43 -127.81 -107.09 REMARK 500 14 SER A 46 -76.68 66.50 REMARK 500 14 VAL A 47 -28.63 -171.94 REMARK 500 14 THR A 48 34.70 -81.96 REMARK 500 14 CYS A 49 -167.56 37.29 REMARK 500 14 LYS A 50 123.70 -29.72 REMARK 500 14 ASN A 61 69.42 -101.55 REMARK 500 14 GLU A 82 -63.32 -139.53 REMARK 500 15 VAL A 4 -119.82 32.95 REMARK 500 15 GLU A 9 45.07 -151.48 REMARK 500 15 ARG A 10 -117.97 -142.09 REMARK 500 15 ASP A 35 -53.50 -127.75 REMARK 500 15 SER A 40 40.21 -87.65 REMARK 500 15 THR A 43 30.57 -152.20 REMARK 500 15 VAL A 47 95.60 34.17 REMARK 500 15 THR A 48 48.50 33.43 REMARK 500 15 CYS A 49 -83.93 -40.99 REMARK 500 15 LYS A 50 91.41 52.63 REMARK 500 15 SER A 51 34.12 -146.59 REMARK 500 15 PHE A 67 1.30 -68.51 REMARK 500 15 SER A 80 30.12 -78.19 REMARK 500 16 ASP A 6 134.50 61.02 REMARK 500 16 GLU A 9 42.09 -145.87 REMARK 500 16 ARG A 10 -119.59 -136.81 REMARK 500 16 GLN A 34 39.96 74.29 REMARK 500 16 ASP A 35 -51.32 -142.16 REMARK 500 16 GLN A 41 28.80 46.38 REMARK 500 16 THR A 43 -120.71 -129.67 REMARK 500 16 CYS A 44 -22.85 82.17 REMARK 500 16 LEU A 45 20.08 -78.92 REMARK 500 16 SER A 46 -61.57 -103.25 REMARK 500 16 VAL A 47 100.67 -55.85 REMARK 500 16 LYS A 50 32.56 -143.85 REMARK 500 16 PRO A 65 108.30 -55.90 REMARK 500 16 GLN A 66 -35.77 -28.27 REMARK 500 16 SER A 80 21.93 -74.70 REMARK 500 16 GLU A 82 -61.27 -133.65 REMARK 500 17 VAL A 4 -169.42 -75.61 REMARK 500 17 ASP A 6 89.14 53.27 REMARK 500 17 GLU A 9 23.70 -160.69 REMARK 500 17 ARG A 10 -116.86 -145.66 REMARK 500 17 CYS A 27 41.94 35.98 REMARK 500 17 GLN A 34 39.31 75.34 REMARK 500 17 ASP A 35 -50.29 -142.09 REMARK 500 17 SER A 40 36.80 -93.98 REMARK 500 17 GLN A 41 -11.37 60.28 REMARK 500 17 THR A 43 -121.21 -102.68 REMARK 500 17 LEU A 45 -79.81 -79.53 REMARK 500 17 SER A 46 -103.91 37.60 REMARK 500 17 VAL A 47 -104.33 -49.44 REMARK 500 17 CYS A 49 -174.81 -55.15 REMARK 500 17 SER A 51 61.81 60.21 REMARK 500 17 ASP A 53 -158.37 -115.32 REMARK 500 17 SER A 80 21.45 -72.72 REMARK 500 17 GLU A 82 -59.85 -136.53 REMARK 500 18 ASP A 6 36.18 -82.24 REMARK 500 18 GLU A 9 45.32 -149.27 REMARK 500 18 ARG A 10 -118.75 -141.50 REMARK 500 18 CYS A 27 41.97 35.34 REMARK 500 18 ASP A 35 -53.48 -141.25 REMARK 500 18 SER A 40 34.67 -96.52 REMARK 500 18 GLN A 41 57.42 29.66 REMARK 500 18 LEU A 45 31.70 -83.38 REMARK 500 18 SER A 46 -65.45 -142.89 REMARK 500 18 LYS A 50 90.26 -170.26 REMARK 500 18 SER A 51 52.62 -162.36 REMARK 500 18 TRP A 68 42.03 -107.60 REMARK 500 18 SER A 80 33.07 -75.67 REMARK 500 19 GLU A 9 42.47 -145.77 REMARK 500 19 ARG A 10 -118.18 -137.92 REMARK 500 19 GLN A 34 30.39 76.78 REMARK 500 19 ASP A 35 -52.39 -131.80 REMARK 500 19 SER A 40 38.97 -86.17 REMARK 500 19 GLN A 41 24.31 42.45 REMARK 500 19 VAL A 47 -123.57 37.67 REMARK 500 19 LYS A 50 76.10 -168.02 REMARK 500 19 SER A 51 40.23 -149.94 REMARK 500 19 VAL A 60 -159.84 -135.68 REMARK 500 19 SER A 80 29.56 -75.47 REMARK 500 20 GLU A 9 43.44 -148.06 REMARK 500 20 ARG A 10 -118.01 -139.53 REMARK 500 20 ASP A 35 -53.02 -133.03 REMARK 500 20 GLN A 41 -0.25 68.37 REMARK 500 20 THR A 43 32.42 -151.63 REMARK 500 20 SER A 46 -112.31 -88.73 REMARK 500 20 THR A 48 46.95 35.10 REMARK 500 20 LYS A 50 88.83 -164.13 REMARK 500 20 SER A 51 49.56 -171.66 REMARK 500 20 ASN A 61 46.72 -82.11 REMARK 500 20 SER A 80 8.10 -69.23 REMARK 500 20 GLU A 82 -62.32 -123.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA A 86 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 39 OE1 REMARK 620 2 CYS A 27 N 86.6 REMARK 620 3 ASP A 38 O 94.4 58.8 REMARK 620 4 TRP A 25 O 136.8 81.9 114.0 REMARK 620 5 SER A 30 O 60.7 146.5 126.0 116.1 REMARK 620 6 ASP A 38 OD1 115.6 130.4 74.9 103.3 75.3 REMARK 620 7 ASP A 28 OD1 73.3 103.3 159.6 69.3 62.5 124.9 REMARK 620 8 GLU A 32 OE1 121.8 141.3 133.6 59.4 64.1 64.1 66.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA A 87 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 71 OD2 REMARK 620 2 GLN A 73 O 95.5 REMARK 620 3 ASP A 75 OD2 113.3 62.4 REMARK 620 4 ASP A 81 OD2 169.5 92.8 65.3 REMARK 620 5 GLU A 82 OE1 129.7 59.9 94.0 60.3 REMARK 620 6 TRP A 68 O 91.1 155.2 135.4 84.0 97.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 86 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 87 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LDR RELATED DB: PDB REMARK 900 NMR STRUCTURE OF LB2 REMARK 900 RELATED ID: 1LDL RELATED DB: PDB REMARK 900 NMR STRUCTURE OF LB1 REMARK 900 RELATED ID: 1AJJ RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF LB5 DBREF 1F5Y A 3 85 UNP P01130 LDLR_HUMAN 22 104 SEQADV 1F5Y GLY A 1 UNP P01130 CLONING ARTIFACT SEQADV 1F5Y SER A 2 UNP P01130 CLONING ARTIFACT SEQRES 1 A 85 GLY SER ALA VAL GLY ASP ARG CYS GLU ARG ASN GLU PHE SEQRES 2 A 85 GLN CYS GLN ASP GLY LYS CYS ILE SER TYR LYS TRP VAL SEQRES 3 A 85 CYS ASP GLY SER ALA GLU CYS GLN ASP GLY SER ASP GLU SEQRES 4 A 85 SER GLN GLU THR CYS LEU SER VAL THR CYS LYS SER GLY SEQRES 5 A 85 ASP PHE SER CYS GLY GLY ARG VAL ASN ARG CYS ILE PRO SEQRES 6 A 85 GLN PHE TRP ARG CYS ASP GLY GLN VAL ASP CYS ASP ASN SEQRES 7 A 85 GLY SER ASP GLU GLN GLY CYS HET CA A 86 1 HET CA A 87 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) HELIX 1 1 TYR A 23 TRP A 25 5 3 HELIX 2 2 GLN A 66 TRP A 68 5 3 SHEET 1 A 2 PHE A 13 GLN A 14 0 SHEET 2 A 2 CYS A 20 ILE A 21 -1 N ILE A 21 O PHE A 13 SHEET 1 B 2 PHE A 54 SER A 55 0 SHEET 2 B 2 CYS A 63 ILE A 64 -1 O ILE A 64 N PHE A 54 SSBOND 1 CYS A 8 CYS A 20 1555 1555 2.02 SSBOND 2 CYS A 15 CYS A 33 1555 1555 2.02 SSBOND 3 CYS A 27 CYS A 44 1555 1555 2.02 SSBOND 4 CYS A 49 CYS A 63 1555 1555 2.02 SSBOND 5 CYS A 56 CYS A 76 1555 1555 2.02 SSBOND 6 CYS A 70 CYS A 85 1555 1555 2.02 LINK CA CA A 86 OE1 GLU A 39 1555 1555 2.70 LINK CA CA A 86 N CYS A 27 1555 1555 2.90 LINK CA CA A 86 O ASP A 38 1555 1555 3.09 LINK CA CA A 86 O TRP A 25 1555 1555 2.67 LINK CA CA A 86 O SER A 30 1555 1555 2.62 LINK CA CA A 86 OD1 ASP A 38 1555 1555 2.68 LINK CA CA A 86 OD1 ASP A 28 1555 1555 2.66 LINK CA CA A 86 OE1 GLU A 32 1555 1555 2.67 LINK CA CA A 87 OD2 ASP A 71 1555 1555 2.72 LINK CA CA A 87 O GLN A 73 1555 1555 2.65 LINK CA CA A 87 OD2 ASP A 75 1555 1555 2.66 LINK CA CA A 87 OD2 ASP A 81 1555 1555 2.72 LINK CA CA A 87 OE1 GLU A 82 1555 1555 2.66 LINK CA CA A 87 O TRP A 68 1555 1555 2.66 SITE 1 AC1 8 TRP A 25 VAL A 26 CYS A 27 ASP A 28 SITE 2 AC1 8 SER A 30 GLU A 32 ASP A 38 GLU A 39 SITE 1 AC2 6 TRP A 68 ASP A 71 GLN A 73 ASP A 75 SITE 2 AC2 6 ASP A 81 GLU A 82 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 511 0 2 2 4 0 4 6 0 0 0 7 END