HEADER OXYGEN STORAGE/TRANSPORT 15-JUN-00 1F5P TITLE 2.9 ANGSTROM CRYSTAL STRUCTURE OF LAMPREY HEMOGLOBIN THAT TITLE 2 HAS BEEN EXPOSED TO CARBON MONOXIDE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN V; COMPND 3 CHAIN: A, B, C, D, E, F SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PETROMYZON MARINUS; SOURCE 3 ORGANISM_COMMON: SEA LAMPREY; SOURCE 4 ORGANISM_TAXID: 7757 KEYWDS CRYSTALLINE LIGAND TRANSITIONS, HEMOGLOBIN, HEME, LAMPREY, KEYWDS 2 OXYGEN STORAGE/TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.A.HEASLET,W.E.ROYER JR. REVDAT 4 24-FEB-09 1F5P 1 VERSN REVDAT 3 01-APR-03 1F5P 1 JRNL REVDAT 2 22-AUG-01 1F5P 1 JRNL REVDAT 1 28-JUN-00 1F5P 0 JRNL AUTH H.A.HEASLET,W.E.ROYER JR. JRNL TITL CRYSTALLINE LIGAND TRANSITIONS IN LAMPREY JRNL TITL 2 HEMOGLOBIN. STRUCTURAL EVIDENCE FOR THE REGULATION JRNL TITL 3 OF OXYGEN AFFINITY. JRNL REF J.BIOL.CHEM. V. 276 26230 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11340069 JRNL DOI 10.1074/JBC.M101391200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.A.HEASLET,W.E.ROYER JR. REMARK 1 TITL THE 2.7 ANGSTROM CRYSTAL STRUCTURE OF REMARK 1 TITL 2 DEOXYGENTATED HEMOGLOBIN FROM THE SEA LAMPREY REMARK 1 TITL 3 (PETROMYZON MARINUS): STRUCTURAL BASIS FOR A REMARK 1 TITL 4 LOWERED OXYGEN AFFINITY AND BOHR EFFECT. REMARK 1 REF STRUCTURE V. 7 517 1999 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(99)80068-9 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 75.6 REMARK 3 NUMBER OF REFLECTIONS : 19804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1803 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6884 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 270 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.59 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 1.06 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING, POWELL REMARK 3 MINIMIZATION, GROUP B-FACTOR AND GROUP OCCUPANCY REFINEMENTS REMARK 3 USING TIGHT NON-CRYSTALLOGRAPHIC SYMMETRY RESTRAINTS (WA=200) REMARK 3 ON THE PROTEIN EXCEPT FOR RESIDUE 73. REMARK 4 REMARK 4 1F5P COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-00. REMARK 100 THE RCSB ID CODE IS RCSB011274. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 296 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19804 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 75.6 REMARK 200 DATA REDUNDANCY : 3.010 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.37600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4K, 170MM PHOSPHATE REMARK 280 BUFFER, PH 6.8, SMALL TUBES, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.25000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.55000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.10000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.55000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.25000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.10000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE PHYSIOLOGICALLY RELEVENT REMARK 300 ASSEMBLY IS A HOMODIMER IN REMARK 300 WHICH THE SUBUNITS ARE RELATED REMARK 300 BY A TWOFOLD AXIS OF SYMMETRY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 Crystalline ligand transition experiments. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 110 NE2 GLN C 110 1455 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 -53.80 -28.64 REMARK 500 THR A 29 46.33 -143.49 REMARK 500 ASP A 90 77.42 -119.65 REMARK 500 ALA A 128 64.51 -164.03 REMARK 500 THR B 29 47.29 -142.48 REMARK 500 ASP B 90 77.86 -115.83 REMARK 500 ALA B 128 63.62 -164.25 REMARK 500 ALA C 24 -55.92 -29.32 REMARK 500 SER C 28 -19.79 -49.51 REMARK 500 THR C 29 44.85 -142.18 REMARK 500 ASP C 90 79.17 -115.95 REMARK 500 ALA C 128 65.29 -165.81 REMARK 500 THR D 29 46.53 -143.79 REMARK 500 ASP D 90 77.96 -115.90 REMARK 500 ALA D 128 63.61 -162.65 REMARK 500 ALA E 24 -56.07 -29.62 REMARK 500 THR E 29 46.50 -142.84 REMARK 500 ASP E 90 77.91 -119.43 REMARK 500 ALA E 128 63.61 -162.22 REMARK 500 ALA F 24 -55.98 -29.38 REMARK 500 THR F 29 47.54 -141.89 REMARK 500 ASP F 90 78.11 -116.53 REMARK 500 ALA F 128 63.05 -164.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 150 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 105 NE2 REMARK 620 2 CMO A 151 C 170.5 REMARK 620 3 CMO A 151 O 165.2 5.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 150 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 105 NE2 REMARK 620 2 CMO B 151 C 170.8 REMARK 620 3 CMO B 151 O 163.3 8.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 150 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 105 NE2 REMARK 620 2 CMO C 151 C 179.7 REMARK 620 3 CMO C 151 O 174.6 5.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 150 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 105 NE2 REMARK 620 2 CMO D 151 C 179.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM E 150 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 105 NE2 REMARK 620 2 CMO E 151 C 174.9 REMARK 620 3 CMO E 151 O 173.0 2.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM F 150 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 105 NE2 REMARK 620 2 CMO F 151 C 175.0 REMARK 620 3 CMO F 151 O 168.9 6.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 150 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMO A 151 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 150 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMO B 151 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 150 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMO C 151 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM D 150 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMO D 151 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM E 150 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMO E 151 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM F 150 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMO F 151 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F5O RELATED DB: PDB REMARK 900 2.9 ANGSTROM CRYSTAL STRUCTURE OF DEOXYGENATED LAMPREY REMARK 900 HEMOGLOBIN V IN THE SPACE GROUP P2(1)2(1)2(1) REMARK 900 RELATED ID: 3LHB RELATED DB: PDB REMARK 900 2.7 ANGSTROM CRYSTAL STRUCTURE OF DEOXYGENTATED LAMPREY REMARK 900 HEMOGLOBIN V IN THE SPACE GROUP P2(1) WITH TWELVE MONOMERS REMARK 900 IN THE ASSYMETRIC UNIT. REMARK 900 RELATED ID: 2LHB RELATED DB: PDB REMARK 900 REFINEMENT OF A MOLECULAR MODEL FOR LAMPREY HEMOGLOBIN FROM REMARK 900 PETROMYZON MARINUS. DBREF 1F5P A 1 149 UNP P02208 GLB5_PETMA 2 150 DBREF 1F5P B 1 149 UNP P02208 GLB5_PETMA 2 150 DBREF 1F5P C 1 149 UNP P02208 GLB5_PETMA 2 150 DBREF 1F5P D 1 149 UNP P02208 GLB5_PETMA 2 150 DBREF 1F5P E 1 149 UNP P02208 GLB5_PETMA 2 150 DBREF 1F5P F 1 149 UNP P02208 GLB5_PETMA 2 150 SEQADV 1F5P THR A 29 UNP P02208 ASN 30 SEE REMARK 999 SEQADV 1F5P ALA A 86 UNP P02208 VAL 87 SEE REMARK 999 SEQADV 1F5P THR B 29 UNP P02208 ASN 30 SEE REMARK 999 SEQADV 1F5P ALA B 86 UNP P02208 VAL 87 SEE REMARK 999 SEQADV 1F5P THR C 29 UNP P02208 ASN 30 SEE REMARK 999 SEQADV 1F5P ALA C 86 UNP P02208 VAL 87 SEE REMARK 999 SEQADV 1F5P THR D 29 UNP P02208 ASN 30 SEE REMARK 999 SEQADV 1F5P ALA D 86 UNP P02208 VAL 87 SEE REMARK 999 SEQADV 1F5P THR E 29 UNP P02208 ASN 30 SEE REMARK 999 SEQADV 1F5P ALA E 86 UNP P02208 VAL 87 SEE REMARK 999 SEQADV 1F5P THR F 29 UNP P02208 ASN 30 SEE REMARK 999 SEQADV 1F5P ALA F 86 UNP P02208 VAL 87 SEE REMARK 999 SEQRES 1 A 149 PRO ILE VAL ASP THR GLY SER VAL ALA PRO LEU SER ALA SEQRES 2 A 149 ALA GLU LYS THR LYS ILE ARG SER ALA TRP ALA PRO VAL SEQRES 3 A 149 TYR SER THR TYR GLU THR SER GLY VAL ASP ILE LEU VAL SEQRES 4 A 149 LYS PHE PHE THR SER THR PRO ALA ALA GLN GLU PHE PHE SEQRES 5 A 149 PRO LYS PHE LYS GLY LEU THR THR ALA ASP GLN LEU LYS SEQRES 6 A 149 LYS SER ALA ASP VAL ARG TRP HIS ALA GLU ARG ILE ILE SEQRES 7 A 149 ASN ALA VAL ASN ASP ALA VAL ALA SER MET ASP ASP THR SEQRES 8 A 149 GLU LYS MET SER MET LYS LEU ARG ASP LEU SER GLY LYS SEQRES 9 A 149 HIS ALA LYS SER PHE GLN VAL ASP PRO GLN TYR PHE LYS SEQRES 10 A 149 VAL LEU ALA ALA VAL ILE ALA ASP THR VAL ALA ALA GLY SEQRES 11 A 149 ASP ALA GLY PHE GLU LYS LEU MET SER MET ILE CYS ILE SEQRES 12 A 149 LEU LEU ARG SER ALA TYR SEQRES 1 B 149 PRO ILE VAL ASP THR GLY SER VAL ALA PRO LEU SER ALA SEQRES 2 B 149 ALA GLU LYS THR LYS ILE ARG SER ALA TRP ALA PRO VAL SEQRES 3 B 149 TYR SER THR TYR GLU THR SER GLY VAL ASP ILE LEU VAL SEQRES 4 B 149 LYS PHE PHE THR SER THR PRO ALA ALA GLN GLU PHE PHE SEQRES 5 B 149 PRO LYS PHE LYS GLY LEU THR THR ALA ASP GLN LEU LYS SEQRES 6 B 149 LYS SER ALA ASP VAL ARG TRP HIS ALA GLU ARG ILE ILE SEQRES 7 B 149 ASN ALA VAL ASN ASP ALA VAL ALA SER MET ASP ASP THR SEQRES 8 B 149 GLU LYS MET SER MET LYS LEU ARG ASP LEU SER GLY LYS SEQRES 9 B 149 HIS ALA LYS SER PHE GLN VAL ASP PRO GLN TYR PHE LYS SEQRES 10 B 149 VAL LEU ALA ALA VAL ILE ALA ASP THR VAL ALA ALA GLY SEQRES 11 B 149 ASP ALA GLY PHE GLU LYS LEU MET SER MET ILE CYS ILE SEQRES 12 B 149 LEU LEU ARG SER ALA TYR SEQRES 1 C 149 PRO ILE VAL ASP THR GLY SER VAL ALA PRO LEU SER ALA SEQRES 2 C 149 ALA GLU LYS THR LYS ILE ARG SER ALA TRP ALA PRO VAL SEQRES 3 C 149 TYR SER THR TYR GLU THR SER GLY VAL ASP ILE LEU VAL SEQRES 4 C 149 LYS PHE PHE THR SER THR PRO ALA ALA GLN GLU PHE PHE SEQRES 5 C 149 PRO LYS PHE LYS GLY LEU THR THR ALA ASP GLN LEU LYS SEQRES 6 C 149 LYS SER ALA ASP VAL ARG TRP HIS ALA GLU ARG ILE ILE SEQRES 7 C 149 ASN ALA VAL ASN ASP ALA VAL ALA SER MET ASP ASP THR SEQRES 8 C 149 GLU LYS MET SER MET LYS LEU ARG ASP LEU SER GLY LYS SEQRES 9 C 149 HIS ALA LYS SER PHE GLN VAL ASP PRO GLN TYR PHE LYS SEQRES 10 C 149 VAL LEU ALA ALA VAL ILE ALA ASP THR VAL ALA ALA GLY SEQRES 11 C 149 ASP ALA GLY PHE GLU LYS LEU MET SER MET ILE CYS ILE SEQRES 12 C 149 LEU LEU ARG SER ALA TYR SEQRES 1 D 149 PRO ILE VAL ASP THR GLY SER VAL ALA PRO LEU SER ALA SEQRES 2 D 149 ALA GLU LYS THR LYS ILE ARG SER ALA TRP ALA PRO VAL SEQRES 3 D 149 TYR SER THR TYR GLU THR SER GLY VAL ASP ILE LEU VAL SEQRES 4 D 149 LYS PHE PHE THR SER THR PRO ALA ALA GLN GLU PHE PHE SEQRES 5 D 149 PRO LYS PHE LYS GLY LEU THR THR ALA ASP GLN LEU LYS SEQRES 6 D 149 LYS SER ALA ASP VAL ARG TRP HIS ALA GLU ARG ILE ILE SEQRES 7 D 149 ASN ALA VAL ASN ASP ALA VAL ALA SER MET ASP ASP THR SEQRES 8 D 149 GLU LYS MET SER MET LYS LEU ARG ASP LEU SER GLY LYS SEQRES 9 D 149 HIS ALA LYS SER PHE GLN VAL ASP PRO GLN TYR PHE LYS SEQRES 10 D 149 VAL LEU ALA ALA VAL ILE ALA ASP THR VAL ALA ALA GLY SEQRES 11 D 149 ASP ALA GLY PHE GLU LYS LEU MET SER MET ILE CYS ILE SEQRES 12 D 149 LEU LEU ARG SER ALA TYR SEQRES 1 E 149 PRO ILE VAL ASP THR GLY SER VAL ALA PRO LEU SER ALA SEQRES 2 E 149 ALA GLU LYS THR LYS ILE ARG SER ALA TRP ALA PRO VAL SEQRES 3 E 149 TYR SER THR TYR GLU THR SER GLY VAL ASP ILE LEU VAL SEQRES 4 E 149 LYS PHE PHE THR SER THR PRO ALA ALA GLN GLU PHE PHE SEQRES 5 E 149 PRO LYS PHE LYS GLY LEU THR THR ALA ASP GLN LEU LYS SEQRES 6 E 149 LYS SER ALA ASP VAL ARG TRP HIS ALA GLU ARG ILE ILE SEQRES 7 E 149 ASN ALA VAL ASN ASP ALA VAL ALA SER MET ASP ASP THR SEQRES 8 E 149 GLU LYS MET SER MET LYS LEU ARG ASP LEU SER GLY LYS SEQRES 9 E 149 HIS ALA LYS SER PHE GLN VAL ASP PRO GLN TYR PHE LYS SEQRES 10 E 149 VAL LEU ALA ALA VAL ILE ALA ASP THR VAL ALA ALA GLY SEQRES 11 E 149 ASP ALA GLY PHE GLU LYS LEU MET SER MET ILE CYS ILE SEQRES 12 E 149 LEU LEU ARG SER ALA TYR SEQRES 1 F 149 PRO ILE VAL ASP THR GLY SER VAL ALA PRO LEU SER ALA SEQRES 2 F 149 ALA GLU LYS THR LYS ILE ARG SER ALA TRP ALA PRO VAL SEQRES 3 F 149 TYR SER THR TYR GLU THR SER GLY VAL ASP ILE LEU VAL SEQRES 4 F 149 LYS PHE PHE THR SER THR PRO ALA ALA GLN GLU PHE PHE SEQRES 5 F 149 PRO LYS PHE LYS GLY LEU THR THR ALA ASP GLN LEU LYS SEQRES 6 F 149 LYS SER ALA ASP VAL ARG TRP HIS ALA GLU ARG ILE ILE SEQRES 7 F 149 ASN ALA VAL ASN ASP ALA VAL ALA SER MET ASP ASP THR SEQRES 8 F 149 GLU LYS MET SER MET LYS LEU ARG ASP LEU SER GLY LYS SEQRES 9 F 149 HIS ALA LYS SER PHE GLN VAL ASP PRO GLN TYR PHE LYS SEQRES 10 F 149 VAL LEU ALA ALA VAL ILE ALA ASP THR VAL ALA ALA GLY SEQRES 11 F 149 ASP ALA GLY PHE GLU LYS LEU MET SER MET ILE CYS ILE SEQRES 12 F 149 LEU LEU ARG SER ALA TYR HET HEM A 150 43 HET CMO A 151 2 HET HEM B 150 43 HET CMO B 151 2 HET HEM C 150 43 HET CMO C 151 2 HET HEM D 150 43 HET CMO D 151 2 HET HEM E 150 43 HET CMO E 151 2 HET HEM F 150 43 HET CMO F 151 2 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CMO CARBON MONOXIDE HETSYN HEM HEME FORMUL 7 HEM 6(C34 H32 FE N4 O4) FORMUL 8 CMO 6(C O) FORMUL 19 HOH *6(H2 O) HELIX 1 1 SER A 12 SER A 28 1 17 HELIX 2 2 THR A 29 THR A 45 1 17 HELIX 3 3 PRO A 46 LYS A 56 5 11 HELIX 4 4 THR A 60 LYS A 65 1 6 HELIX 5 5 SER A 67 MET A 88 1 22 HELIX 6 6 ASP A 90 SER A 108 1 19 HELIX 7 7 ASP A 112 GLN A 114 5 3 HELIX 8 8 TYR A 115 ALA A 129 1 15 HELIX 9 9 ASP A 131 ARG A 146 1 16 HELIX 10 10 SER B 12 SER B 28 1 17 HELIX 11 11 THR B 29 THR B 45 1 17 HELIX 12 12 PRO B 46 LYS B 56 5 11 HELIX 13 13 THR B 60 LYS B 65 1 6 HELIX 14 14 SER B 67 MET B 88 1 22 HELIX 15 15 ASP B 90 SER B 108 1 19 HELIX 16 16 ASP B 112 GLN B 114 5 3 HELIX 17 17 TYR B 115 ALA B 129 1 15 HELIX 18 18 ASP B 131 ARG B 146 1 16 HELIX 19 19 SER C 12 SER C 28 1 17 HELIX 20 20 THR C 29 THR C 45 1 17 HELIX 21 21 PRO C 46 LYS C 56 5 11 HELIX 22 22 THR C 60 LYS C 65 1 6 HELIX 23 23 SER C 67 MET C 88 1 22 HELIX 24 24 ASP C 90 SER C 108 1 19 HELIX 25 25 ASP C 112 GLN C 114 5 3 HELIX 26 26 TYR C 115 ALA C 129 1 15 HELIX 27 27 ASP C 131 ARG C 146 1 16 HELIX 28 28 SER D 12 SER D 28 1 17 HELIX 29 29 THR D 29 THR D 45 1 17 HELIX 30 30 PRO D 46 LYS D 56 5 11 HELIX 31 31 THR D 60 LYS D 65 1 6 HELIX 32 32 SER D 67 MET D 88 1 22 HELIX 33 33 ASP D 90 SER D 108 1 19 HELIX 34 34 ASP D 112 GLN D 114 5 3 HELIX 35 35 TYR D 115 ALA D 129 1 15 HELIX 36 36 ASP D 131 ARG D 146 1 16 HELIX 37 37 SER E 12 SER E 28 1 17 HELIX 38 38 THR E 29 THR E 45 1 17 HELIX 39 39 PRO E 46 LYS E 56 5 11 HELIX 40 40 THR E 60 LYS E 65 1 6 HELIX 41 41 SER E 67 SER E 87 1 21 HELIX 42 42 ASP E 90 SER E 108 1 19 HELIX 43 43 ASP E 112 GLN E 114 5 3 HELIX 44 44 TYR E 115 ALA E 129 1 15 HELIX 45 45 ASP E 131 ARG E 146 1 16 HELIX 46 46 SER F 12 SER F 28 1 17 HELIX 47 47 THR F 29 THR F 45 1 17 HELIX 48 48 PRO F 46 LYS F 56 5 11 HELIX 49 49 THR F 60 LYS F 65 1 6 HELIX 50 50 SER F 67 SER F 87 1 21 HELIX 51 51 ASP F 90 SER F 108 1 19 HELIX 52 52 ASP F 112 GLN F 114 5 3 HELIX 53 53 TYR F 115 ALA F 129 1 15 HELIX 54 54 ASP F 131 ARG F 146 1 16 LINK FE HEM A 150 NE2 HIS A 105 1555 1555 1.95 LINK FE HEM A 150 C CMO A 151 1555 1555 1.86 LINK FE HEM B 150 NE2 HIS B 105 1555 1555 1.97 LINK FE HEM B 150 C CMO B 151 1555 1555 1.87 LINK FE HEM C 150 NE2 HIS C 105 1555 1555 2.09 LINK FE HEM C 150 C CMO C 151 1555 1555 1.89 LINK FE HEM D 150 NE2 HIS D 105 1555 1555 2.13 LINK FE HEM D 150 C CMO D 151 1555 1555 1.94 LINK FE HEM E 150 NE2 HIS E 105 1555 1555 2.09 LINK FE HEM E 150 C CMO E 151 1555 1555 1.86 LINK FE HEM F 150 NE2 HIS F 105 1555 1555 2.11 LINK FE HEM F 150 C CMO F 151 1555 1555 1.92 LINK FE HEM A 150 O CMO A 151 1555 1555 3.07 LINK FE HEM B 150 O CMO B 151 1555 1555 3.05 LINK FE HEM C 150 O CMO C 151 1555 1555 3.11 LINK FE HEM E 150 O CMO E 151 1555 1555 3.10 LINK FE HEM F 150 O CMO F 151 1555 1555 3.13 SITE 1 AC1 15 PHE A 51 PHE A 52 LYS A 54 HIS A 73 SITE 2 AC1 15 ARG A 76 ALA A 80 LYS A 104 HIS A 105 SITE 3 AC1 15 PHE A 109 VAL A 111 TYR A 115 PHE A 116 SITE 4 AC1 15 LEU A 119 LEU A 145 CMO A 151 SITE 1 AC2 3 HIS A 73 ILE A 77 HEM A 150 SITE 1 AC3 13 PHE B 51 LYS B 54 HIS B 73 ARG B 76 SITE 2 AC3 13 LYS B 104 HIS B 105 PHE B 109 VAL B 111 SITE 3 AC3 13 TYR B 115 PHE B 116 LEU B 119 LEU B 145 SITE 4 AC3 13 CMO B 151 SITE 1 AC4 3 HIS B 73 ILE B 77 HEM B 150 SITE 1 AC5 15 PHE C 51 PHE C 52 LYS C 54 HIS C 73 SITE 2 AC5 15 ARG C 76 ILE C 77 LEU C 101 LYS C 104 SITE 3 AC5 15 HIS C 105 PHE C 109 VAL C 111 TYR C 115 SITE 4 AC5 15 PHE C 116 LEU C 145 CMO C 151 SITE 1 AC6 3 HIS C 73 ILE C 77 HEM C 150 SITE 1 AC7 14 PHE D 51 PHE D 52 LYS D 54 HIS D 73 SITE 2 AC7 14 ARG D 76 ALA D 80 LYS D 104 HIS D 105 SITE 3 AC7 14 PHE D 109 TYR D 115 PHE D 116 LEU D 119 SITE 4 AC7 14 LEU D 145 CMO D 151 SITE 1 AC8 3 HIS D 73 ILE D 77 HEM D 150 SITE 1 AC9 14 PHE E 51 PHE E 52 LYS E 54 HIS E 73 SITE 2 AC9 14 ARG E 76 LYS E 104 HIS E 105 PHE E 109 SITE 3 AC9 14 VAL E 111 TYR E 115 PHE E 116 LEU E 119 SITE 4 AC9 14 LEU E 145 CMO E 151 SITE 1 BC1 3 HIS E 73 ILE E 77 HEM E 150 SITE 1 BC2 14 PHE F 51 PHE F 52 LYS F 54 HIS F 73 SITE 2 BC2 14 ARG F 76 ILE F 77 LYS F 104 HIS F 105 SITE 3 BC2 14 PHE F 109 VAL F 111 TYR F 115 PHE F 116 SITE 4 BC2 14 LEU F 145 CMO F 151 SITE 1 BC3 3 HIS F 73 ILE F 77 HEM F 150 CRYST1 82.500 96.200 145.100 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012121 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010395 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006892 0.00000 MASTER 402 0 12 54 0 0 30 6 0 0 0 72 END