HEADER OXIDOREDUCTASE 20-MAY-00 1F1V TITLE ANAEROBIC SUBSTRATE COMPLEX OF HOMOPROTOCATECHUATE 2,3-DIOXYGENASE TITLE 2 FROM ARTHROBACTER GLOBIFORMIS. (COMPLEX WITH 3,4- TITLE 3 DIHYDROXYPHENYLACETATE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMOPROTOCATECHUATE 2,3-DIOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3,4-DIHYDROXYPHENYLACETATE 2,3-DIOXYGENASE; COMPND 5 EC: 1.13.11.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROBACTER GLOBIFORMIS; SOURCE 3 ORGANISM_TAXID: 1665; SOURCE 4 STRAIN: CM-2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIOXYGENASE, EXTRADIOL, MANGANESE, BIODEGRADATION, AROMATIC, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,J.D.LIPSCOMB,L.P.WACKETT,L.QUE JR.,D.H.OHLENDORF REVDAT 4 13-JUL-11 1F1V 1 VERSN REVDAT 3 24-FEB-09 1F1V 1 VERSN REVDAT 2 11-MAY-04 1F1V 1 JRNL REVDAT 1 10-JUN-03 1F1V 0 JRNL AUTH M.W.VETTING,L.P.WACKETT,L.QUE JR.,J.D.LIPSCOMB,D.H.OHLENDORF JRNL TITL CRYSTALLOGRAPHIC COMPARISON OF MANGANESE- AND IRON-DEPENDENT JRNL TITL 2 HOMOPROTOCATECHUATE 2,3-DIOXYGENASES. JRNL REF J.BACTERIOL. V. 186 1945 2004 JRNL REFN ISSN 0021-9193 JRNL PMID 15028678 JRNL DOI 10.1128/JB.186.7.1945-1958.2004 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.K.WHITING,Y.R.BOLDT,M.P.HENDRICH,L.P.WACKETT,L.QUE JR REMARK 1 TITL MANGANESE(II)-DEPENDENT EXTRADIOL-CLEAVING CATECHOL REMARK 1 TITL 2 DIOXYGENASE FROM ARTHROBACTER GLOBIFORMIS CM-2 REMARK 1 REF BIOCHEMISTRY V. 35 160 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI951979H REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.R.BOLDT,M.J.SADOWSKY,L.B.ELLIS,L.QUE JR,L.P.WACKETT REMARK 1 TITL A MANGANESE-DEPENDENT DIOXYGENASE FROM ARTHROBACTER REMARK 1 TITL 2 GLOBIFORMIS CM-2 BELONGS TO THE MAJOR EXTRADIOL DIOXYGENASE REMARK 1 TITL 3 FAMILY REMARK 1 REF J.BACTERIOL. V. 177 1225 1995 REMARK 1 REFN ISSN 0021-9193 REMARK 1 REFERENCE 3 REMARK 1 AUTH Y.R.BOLDT,A.K.WHITING,M.L.WAGNER,M.J.SADOWSKY,L.QUE JR, REMARK 1 AUTH 2 L.P.WACKETT REMARK 1 TITL MANGANESE(II) ACTIVE SITE MUTANTS OF REMARK 1 TITL 2 3,4-DIHYDROXYPHENYLACETATE 2,3-DIOXYGENASE FROM ARTHROBACTER REMARK 1 TITL 3 GLOBIFORMIS STRAIN CM-2. REMARK 1 REF BIOCHEMISTRY V. 36 2147 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI962362I REMARK 1 REFERENCE 4 REMARK 1 AUTH L.QUE JR,J.WIDOM,R.L.CRAWFORD REMARK 1 TITL 3,4-DIHYDROXYPHENYLACETATE 2,3-DIOXYGENASE. A MANGANESE(II) REMARK 1 TITL 2 DIOXYGENASE FROM BACILLUS BREVIS. REMARK 1 REF J.BIOL.CHEM. V. 256 10941 1981 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 56746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM 3% OF DATA REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1742 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5178 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 1.92 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1F1V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-00. REMARK 100 THE RCSB ID CODE IS RCSB011141. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-99 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56746 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.790 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.06300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, MG ACETATE, NA CACODYLATE, REMARK 280 PH 6.8, BATCH CRYSTALLIZATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.71000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.71000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER CONSTRUCTED REMARK 300 FROM CHAIN A AND CHAIN B WITH A SYMMETRY PARTNER REMARK 300 GENERATED BY THE TWO-FOLD. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 13350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASN B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY B 113 C ASP B 114 N -0.176 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 36 -60.42 -100.48 REMARK 500 TYR A 130 -56.30 -120.05 REMARK 500 SER A 251 -28.57 84.16 REMARK 500 GLN A 271 51.05 71.59 REMARK 500 ASP A 272 -158.59 -85.16 REMARK 500 ARG A 293 -63.19 -95.45 REMARK 500 GLN B 197 34.30 -85.84 REMARK 500 SER B 251 -23.24 85.52 REMARK 500 GLN B 271 53.86 70.97 REMARK 500 ARG B 293 -63.63 -91.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 269 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLN A 271 23.7 L L OUTSIDE RANGE REMARK 500 GLN B 271 24.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 791 DISTANCE = 6.64 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 915 O REMARK 620 2 GLU A 267 OE1 177.0 REMARK 620 3 DHY A 999 O3 73.3 107.5 REMARK 620 4 HIS A 155 NE2 86.9 92.8 158.1 REMARK 620 5 HIS A 214 NE2 89.9 87.3 85.6 103.9 REMARK 620 6 DHY A 999 O4 79.1 103.9 77.0 90.5 161.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 916 O REMARK 620 2 DHY B 999 O4 82.1 REMARK 620 3 HIS B 155 NE2 85.5 96.3 REMARK 620 4 HIS B 214 NE2 91.7 160.8 101.4 REMARK 620 5 GLU B 267 OE1 176.3 101.6 94.5 84.7 REMARK 620 6 DHY B 999 O3 76.0 75.9 160.6 84.9 104.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DHY A 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DHY B 999 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F1R RELATED DB: PDB REMARK 900 NATIVE CRYSTAL, DATA COLLECTION AT ROOM TEMPERATURE. REMARK 900 RELATED ID: 1F1U RELATED DB: PDB REMARK 900 NATIVE CRYSTAL, DATA COLLECTION AT CRYOGENIC TEMPERATURE REMARK 900 RELATED ID: 1F1X RELATED DB: PDB REMARK 900 SAME PROTEIN FROM BREVIBACTERIUM FUSCUM, C-TERMINAL REMOVED REMARK 900 WITH TRYPSIN REMARK 900 RELATED ID: 1F1Y RELATED DB: PDB REMARK 900 SAME PROTEIN FROM BREVIBACTERIUM FUSCUM, C-TERMINAL NOT REMARK 900 REMOVED WITH TRYPSIN DBREF 1F1V A 1 323 UNP Q44048 Q44048_ARTGO 1 322 DBREF 1F1V B 1 323 UNP Q44048 Q44048_ARTGO 1 322 SEQADV 1F1V GLY A 233 UNP Q44048 SEE REMARK 999 SEQADV 1F1V ALA A 234 UNP Q44048 ARG 233 SEE REMARK 999 SEQADV 1F1V LEU A 235 UNP Q44048 PRO 234 SEE REMARK 999 SEQADV 1F1V ARG A 236 UNP Q44048 CYS 235 SEE REMARK 999 SEQADV 1F1V ILE A 237 UNP Q44048 ALA 236 SEE REMARK 999 SEQADV 1F1V ASP A 239 UNP Q44048 ALA 238 SEE REMARK 999 SEQADV 1F1V ARG A 240 UNP Q44048 THR 239 SEE REMARK 999 SEQADV 1F1V ILE A 241 UNP Q44048 GLY 240 SEE REMARK 999 SEQADV 1F1V GLU A 242 UNP Q44048 SER 241 SEE REMARK 999 SEQADV 1F1V ARG A 243 UNP Q44048 ASN 242 SEE REMARK 999 SEQADV 1F1V GLY A 246 UNP Q44048 ARG 245 SEE REMARK 999 SEQADV 1F1V ARG A 247 UNP Q44048 PRO 246 SEE REMARK 999 SEQADV 1F1V HIS A 248 UNP Q44048 ALA 247 SEE REMARK 999 SEQADV 1F1V GLY A 249 UNP Q44048 PRO 248 SEE REMARK 999 SEQADV 1F1V GLY B 233 UNP Q44048 SEE REMARK 999 SEQADV 1F1V ALA B 234 UNP Q44048 ARG 233 SEE REMARK 999 SEQADV 1F1V LEU B 235 UNP Q44048 PRO 234 SEE REMARK 999 SEQADV 1F1V ARG B 236 UNP Q44048 CYS 235 SEE REMARK 999 SEQADV 1F1V ILE B 237 UNP Q44048 ALA 236 SEE REMARK 999 SEQADV 1F1V ASP B 239 UNP Q44048 ALA 238 SEE REMARK 999 SEQADV 1F1V ARG B 240 UNP Q44048 THR 239 SEE REMARK 999 SEQADV 1F1V ILE B 241 UNP Q44048 GLY 240 SEE REMARK 999 SEQADV 1F1V GLU B 242 UNP Q44048 SER 241 SEE REMARK 999 SEQADV 1F1V ARG B 243 UNP Q44048 ASN 242 SEE REMARK 999 SEQADV 1F1V GLY B 246 UNP Q44048 ARG 245 SEE REMARK 999 SEQADV 1F1V ARG B 247 UNP Q44048 PRO 246 SEE REMARK 999 SEQADV 1F1V HIS B 248 UNP Q44048 ALA 247 SEE REMARK 999 SEQADV 1F1V GLY B 249 UNP Q44048 PRO 248 SEE REMARK 999 SEQRES 1 A 323 MET THR ASN PHE VAL PRO THR PRO SER VAL PRO ALA PRO SEQRES 2 A 323 ASP ILE VAL ARG CYS ALA TYR MET GLU ILE VAL VAL THR SEQRES 3 A 323 ASP LEU ALA LYS SER ARG GLU PHE TYR VAL ASP VAL LEU SEQRES 4 A 323 GLY LEU HIS VAL THR GLU GLU ASP GLU ASN THR ILE TYR SEQRES 5 A 323 LEU ARG SER LEU GLU GLU PHE ILE HIS HIS ASN LEU VAL SEQRES 6 A 323 LEU ARG GLN GLY PRO ILE ALA ALA VAL ALA ALA PHE ALA SEQRES 7 A 323 TYR ARG VAL LYS SER PRO ALA GLU VAL ASP ALA ALA GLU SEQRES 8 A 323 ALA TYR TYR LYS GLU LEU GLY CYS ARG THR GLU ARG ARG SEQRES 9 A 323 LYS GLU GLY PHE THR LYS GLY ILE GLY ASP SER VAL ARG SEQRES 10 A 323 VAL GLU ASP PRO LEU GLY PHE PRO TYR GLU PHE PHE TYR SEQRES 11 A 323 GLU THR GLU HIS VAL GLU ARG LEU THR GLN ARG TYR ASP SEQRES 12 A 323 LEU TYR SER ALA GLY GLU LEU VAL ARG LEU ASP HIS PHE SEQRES 13 A 323 ASN GLN VAL THR PRO ASP VAL PRO ARG GLY ARG ALA TYR SEQRES 14 A 323 LEU GLU ASP LEU GLY PHE ARG VAL SER GLU ASP ILE LYS SEQRES 15 A 323 ASP SER ASP GLY VAL THR TYR ALA ALA TRP MET HIS ARG SEQRES 16 A 323 LYS GLN THR VAL HIS ASP THR ALA LEU THR GLY GLY ASN SEQRES 17 A 323 GLY PRO ARG MET HIS HIS VAL ALA PHE ALA THR HIS GLU SEQRES 18 A 323 LYS HIS ASN ILE ILE GLN ILE CYS ASP LYS MET GLY ALA SEQRES 19 A 323 LEU ARG ILE SER ASP ARG ILE GLU ARG GLY PRO GLY ARG SEQRES 20 A 323 HIS GLY VAL SER ASN ALA PHE TYR LEU TYR ILE LEU ASP SEQRES 21 A 323 PRO ASP GLY HIS ARG ILE GLU ILE TYR THR GLN ASP TYR SEQRES 22 A 323 TYR THR GLY ASP PRO ASP ASN PRO THR ILE THR TRP ASP SEQRES 23 A 323 VAL HIS ASP ASN GLN ARG ARG ASP TRP TRP GLY ASN PRO SEQRES 24 A 323 VAL VAL PRO SER TRP TYR THR GLU ALA SER LEU VAL LEU SEQRES 25 A 323 ASP LEU ASP GLY ASN PRO GLN PRO VAL ILE VAL SEQRES 1 B 323 MET THR ASN PHE VAL PRO THR PRO SER VAL PRO ALA PRO SEQRES 2 B 323 ASP ILE VAL ARG CYS ALA TYR MET GLU ILE VAL VAL THR SEQRES 3 B 323 ASP LEU ALA LYS SER ARG GLU PHE TYR VAL ASP VAL LEU SEQRES 4 B 323 GLY LEU HIS VAL THR GLU GLU ASP GLU ASN THR ILE TYR SEQRES 5 B 323 LEU ARG SER LEU GLU GLU PHE ILE HIS HIS ASN LEU VAL SEQRES 6 B 323 LEU ARG GLN GLY PRO ILE ALA ALA VAL ALA ALA PHE ALA SEQRES 7 B 323 TYR ARG VAL LYS SER PRO ALA GLU VAL ASP ALA ALA GLU SEQRES 8 B 323 ALA TYR TYR LYS GLU LEU GLY CYS ARG THR GLU ARG ARG SEQRES 9 B 323 LYS GLU GLY PHE THR LYS GLY ILE GLY ASP SER VAL ARG SEQRES 10 B 323 VAL GLU ASP PRO LEU GLY PHE PRO TYR GLU PHE PHE TYR SEQRES 11 B 323 GLU THR GLU HIS VAL GLU ARG LEU THR GLN ARG TYR ASP SEQRES 12 B 323 LEU TYR SER ALA GLY GLU LEU VAL ARG LEU ASP HIS PHE SEQRES 13 B 323 ASN GLN VAL THR PRO ASP VAL PRO ARG GLY ARG ALA TYR SEQRES 14 B 323 LEU GLU ASP LEU GLY PHE ARG VAL SER GLU ASP ILE LYS SEQRES 15 B 323 ASP SER ASP GLY VAL THR TYR ALA ALA TRP MET HIS ARG SEQRES 16 B 323 LYS GLN THR VAL HIS ASP THR ALA LEU THR GLY GLY ASN SEQRES 17 B 323 GLY PRO ARG MET HIS HIS VAL ALA PHE ALA THR HIS GLU SEQRES 18 B 323 LYS HIS ASN ILE ILE GLN ILE CYS ASP LYS MET GLY ALA SEQRES 19 B 323 LEU ARG ILE SER ASP ARG ILE GLU ARG GLY PRO GLY ARG SEQRES 20 B 323 HIS GLY VAL SER ASN ALA PHE TYR LEU TYR ILE LEU ASP SEQRES 21 B 323 PRO ASP GLY HIS ARG ILE GLU ILE TYR THR GLN ASP TYR SEQRES 22 B 323 TYR THR GLY ASP PRO ASP ASN PRO THR ILE THR TRP ASP SEQRES 23 B 323 VAL HIS ASP ASN GLN ARG ARG ASP TRP TRP GLY ASN PRO SEQRES 24 B 323 VAL VAL PRO SER TRP TYR THR GLU ALA SER LEU VAL LEU SEQRES 25 B 323 ASP LEU ASP GLY ASN PRO GLN PRO VAL ILE VAL HET MN A 500 1 HET MN B 500 1 HET DHY A 999 12 HET DHY B 999 12 HETNAM MN MANGANESE (II) ION HETNAM DHY 2-(3,4-DIHYDROXYPHENYL)ACETIC ACID FORMUL 3 MN 2(MN 2+) FORMUL 5 DHY 2(C8 H8 O4) FORMUL 7 HOH *316(H2 O) HELIX 1 1 ASP A 27 VAL A 36 1 10 HELIX 2 2 SER A 83 LEU A 97 1 15 HELIX 3 3 ASP A 162 LEU A 173 1 12 HELIX 4 4 GLU A 221 LEU A 235 1 15 HELIX 5 5 ILE A 237 ASP A 239 5 3 HELIX 6 6 VAL A 301 GLU A 307 1 7 HELIX 7 7 ASP B 27 VAL B 36 1 10 HELIX 8 8 SER B 83 LEU B 97 1 15 HELIX 9 9 ASP B 162 LEU B 173 1 12 HELIX 10 10 GLU B 221 LEU B 235 1 15 HELIX 11 11 ILE B 237 ASP B 239 5 3 HELIX 12 12 VAL B 301 GLU B 307 1 7 SHEET 1 A 8 HIS A 42 GLU A 46 0 SHEET 2 A 8 THR A 50 ARG A 54 -1 O TYR A 52 N THR A 44 SHEET 3 A 8 LEU A 64 GLN A 68 -1 O LEU A 64 N LEU A 53 SHEET 4 A 8 ILE A 15 VAL A 25 1 O MET A 21 N VAL A 65 SHEET 5 A 8 ALA A 73 VAL A 81 -1 O ALA A 73 N VAL A 24 SHEET 6 A 8 PRO A 125 PHE A 129 1 O PRO A 125 N PHE A 77 SHEET 7 A 8 SER A 115 GLU A 119 -1 N VAL A 116 O PHE A 128 SHEET 8 A 8 THR A 101 ARG A 104 -1 O GLU A 102 N ARG A 117 SHEET 1 B 9 ILE A 283 ASP A 286 0 SHEET 2 B 9 ARG A 176 LYS A 182 1 SHEET 3 B 9 THR A 188 HIS A 194 -1 N TYR A 189 O ILE A 181 SHEET 4 B 9 THR A 202 GLY A 206 -1 O THR A 202 N MET A 193 SHEET 5 B 9 ARG A 152 THR A 160 1 O PHE A 156 N ALA A 203 SHEET 6 B 9 ARG A 211 ALA A 218 -1 O ARG A 211 N VAL A 159 SHEET 7 B 9 ARG A 265 THR A 270 1 O ARG A 265 N VAL A 215 SHEET 8 B 9 PHE A 254 LEU A 259 -1 N PHE A 254 O THR A 270 SHEET 9 B 9 ILE A 241 ARG A 247 -1 N GLU A 242 O TYR A 257 SHEET 1 C 7 ILE A 283 ASP A 286 0 SHEET 2 C 7 ARG A 176 LYS A 182 1 SHEET 3 C 7 THR A 188 HIS A 194 -1 N TYR A 189 O ILE A 181 SHEET 4 C 7 THR A 202 GLY A 206 -1 O THR A 202 N MET A 193 SHEET 5 C 7 ARG A 152 THR A 160 1 O PHE A 156 N ALA A 203 SHEET 6 C 7 ARG A 211 ALA A 218 -1 O ARG A 211 N VAL A 159 SHEET 7 C 7 SER A 309 LEU A 310 -1 N SER A 309 O MET A 212 SHEET 1 D 8 HIS B 42 GLU B 46 0 SHEET 2 D 8 THR B 50 ARG B 54 -1 O TYR B 52 N THR B 44 SHEET 3 D 8 LEU B 64 GLN B 68 -1 O LEU B 64 N LEU B 53 SHEET 4 D 8 ILE B 15 VAL B 25 1 O MET B 21 N VAL B 65 SHEET 5 D 8 ALA B 73 VAL B 81 -1 O ALA B 73 N VAL B 24 SHEET 6 D 8 PRO B 125 PHE B 129 1 O PRO B 125 N PHE B 77 SHEET 7 D 8 SER B 115 GLU B 119 -1 O VAL B 116 N PHE B 128 SHEET 8 D 8 THR B 101 ARG B 104 -1 O GLU B 102 N ARG B 117 SHEET 1 E 9 ILE B 283 ASP B 286 0 SHEET 2 E 9 ARG B 176 LYS B 182 1 SHEET 3 E 9 THR B 188 HIS B 194 -1 N TYR B 189 O ILE B 181 SHEET 4 E 9 THR B 202 GLY B 206 -1 O THR B 202 N MET B 193 SHEET 5 E 9 ARG B 152 THR B 160 1 O PHE B 156 N ALA B 203 SHEET 6 E 9 ARG B 211 ALA B 218 -1 O ARG B 211 N VAL B 159 SHEET 7 E 9 ARG B 265 THR B 270 1 O ARG B 265 N VAL B 215 SHEET 8 E 9 PHE B 254 LEU B 259 -1 N PHE B 254 O THR B 270 SHEET 9 E 9 ILE B 241 ARG B 247 -1 N GLU B 242 O TYR B 257 SHEET 1 F 7 ILE B 283 ASP B 286 0 SHEET 2 F 7 ARG B 176 LYS B 182 1 SHEET 3 F 7 THR B 188 HIS B 194 -1 N TYR B 189 O ILE B 181 SHEET 4 F 7 THR B 202 GLY B 206 -1 O THR B 202 N MET B 193 SHEET 5 F 7 ARG B 152 THR B 160 1 O PHE B 156 N ALA B 203 SHEET 6 F 7 ARG B 211 ALA B 218 -1 O ARG B 211 N VAL B 159 SHEET 7 F 7 SER B 309 LEU B 310 -1 O SER B 309 N MET B 212 LINK MN MN A 500 O HOH A 915 1555 1555 2.32 LINK MN MN B 500 O HOH B 916 1555 1555 2.22 LINK MN MN A 500 OE1 GLU A 267 1555 1555 2.01 LINK MN MN A 500 O3 DHY A 999 1555 1555 1.90 LINK MN MN A 500 NE2 HIS A 155 1555 1555 2.12 LINK MN MN A 500 NE2 HIS A 214 1555 1555 2.19 LINK MN MN A 500 O4 DHY A 999 1555 1555 2.14 LINK MN MN B 500 O4 DHY B 999 1555 1555 1.99 LINK MN MN B 500 NE2 HIS B 155 1555 1555 2.17 LINK MN MN B 500 NE2 HIS B 214 1555 1555 2.20 LINK MN MN B 500 OE1 GLU B 267 1555 1555 1.97 LINK MN MN B 500 O3 DHY B 999 1555 1555 2.00 CISPEP 1 GLY A 209 PRO A 210 0 1.20 CISPEP 2 GLY A 244 PRO A 245 0 0.48 CISPEP 3 GLY B 209 PRO B 210 0 0.31 CISPEP 4 GLY B 244 PRO B 245 0 0.51 SITE 1 AC1 5 HIS A 155 HIS A 214 GLU A 267 HOH A 915 SITE 2 AC1 5 DHY A 999 SITE 1 AC2 5 HIS B 155 HIS B 214 GLU B 267 HOH B 916 SITE 2 AC2 5 DHY B 999 SITE 1 AC3 15 HIS A 155 TRP A 192 HIS A 200 HIS A 214 SITE 2 AC3 15 ARG A 243 HIS A 248 VAL A 250 SER A 251 SITE 3 AC3 15 TYR A 257 GLU A 267 TYR A 269 ARG A 293 SITE 4 AC3 15 TRP A 304 MN A 500 HOH A 915 SITE 1 AC4 15 HIS B 155 TRP B 192 HIS B 200 HIS B 214 SITE 2 AC4 15 ARG B 243 HIS B 248 VAL B 250 SER B 251 SITE 3 AC4 15 TYR B 257 GLU B 267 TYR B 269 ARG B 293 SITE 4 AC4 15 TRP B 304 MN B 500 HOH B 916 CRYST1 139.420 59.300 103.200 90.00 118.39 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007173 0.000000 0.003877 0.00000 SCALE2 0.000000 0.016863 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011015 0.00000 MASTER 411 0 4 12 48 0 12 6 0 0 0 50 END