HEADER HYDROLASE 09-MAY-00 1EZ2 TITLE THREE-DIMENSIONAL STRUCTURE OF THE ZINC-CONTAINING PHOSPHOTRIESTERASE TITLE 2 WITH BOUND SUBSTRATE ANALOG DIISOPROPYLMETHYL PHOSPHONATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTRIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PARATHION HYDROLASE, PTE; COMPND 5 EC: 3.1.8.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVUNDIMONAS DIMINUTA; SOURCE 3 ORGANISM_TAXID: 293; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PKK01 KEYWDS HYDROLASE ZINC ORGANOPHOSPHATE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.M.HOLDEN,M.M.BENNING,F.M.RAUSHEL,S.-B.HONG REVDAT 4 04-OCT-17 1EZ2 1 REMARK REVDAT 3 24-FEB-09 1EZ2 1 VERSN REVDAT 2 01-APR-03 1EZ2 1 JRNL REVDAT 1 20-DEC-00 1EZ2 0 JRNL AUTH M.M.BENNING,S.B.HONG,F.M.RAUSHEL,H.M.HOLDEN JRNL TITL THE BINDING OF SUBSTRATE ANALOGS TO PHOSPHOTRIESTERASE. JRNL REF J.BIOL.CHEM. V. 275 30556 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10871616 JRNL DOI 10.1074/JBC.M003852200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 58525 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1830 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 58525 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5022 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.012 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.100 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.006 ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : 0.007 ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT STANDARD GEOMETRY REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-00. REMARK 100 THE DEPOSITION ID IS D_1000011047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-97 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS HI-STAR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : FRAMBO REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58525 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.16200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: TNT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM CHLORIDE, 2 REMARK 280 -PHENYLETHANOL DIISOPROPYLMETHYL PHOSPHONATE, PH 9.0, BATCH, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.70000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.70000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER FORMED BY REMARK 300 CHAINS A AND B. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -152.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 364 REMARK 465 SER A 365 REMARK 465 ALA B 364 REMARK 465 SER B 365 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 35 CG OD1 OD2 REMARK 470 ARG A 363 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 35 CG OD1 OD2 REMARK 470 ARG B 363 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 181 CD GLU A 181 OE2 0.067 REMARK 500 GLU A 263 CD GLU A 263 OE2 0.068 REMARK 500 GLU A 338 CD GLU A 338 OE2 0.071 REMARK 500 GLU A 344 CD GLU A 344 OE2 0.076 REMARK 500 GLU B 115 CD GLU B 115 OE2 0.066 REMARK 500 GLU B 338 CD GLU B 338 OE2 0.066 REMARK 500 GLU B 344 CD GLU B 344 OE2 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 89 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 100 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 100 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 121 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 133 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 133 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 208 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 208 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 232 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 232 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 235 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 235 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 264 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 264 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 315 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 323 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 356 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 89 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 89 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG B 96 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP B 100 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 100 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG B 108 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 139 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 152 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 TYR B 156 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 TYR B 156 CB - CG - CD2 ANGL. DEV. = 4.3 DEGREES REMARK 500 TYR B 156 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 TYR B 156 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG B 189 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ALA B 203 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 ASP B 232 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 232 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP B 264 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 289 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 301 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 319 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP B 323 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -141.90 -142.88 REMARK 500 TRP A 131 -146.80 -103.70 REMARK 500 GLU A 159 -132.12 54.84 REMARK 500 ASP A 236 86.03 -67.70 REMARK 500 SER A 308 38.84 -85.11 REMARK 500 VAL A 351 -58.08 -121.98 REMARK 500 SER B 61 -142.47 -141.82 REMARK 500 TRP B 131 -148.49 -99.75 REMARK 500 GLU B 159 -128.24 50.57 REMARK 500 GLU B 263 -19.87 -49.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 169 OQ1 REMARK 620 2 HIS A 201 ND1 104.4 REMARK 620 3 HIS A 230 NE2 99.4 92.6 REMARK 620 4 HOH A1551 O 111.4 140.9 96.6 REMARK 620 5 DII A1403 O1 127.8 74.3 132.7 71.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 57 NE2 REMARK 620 2 KCX A 169 OQ2 88.0 REMARK 620 3 HIS A 55 NE2 117.5 102.3 REMARK 620 4 ASP A 301 OD2 85.9 173.7 82.1 REMARK 620 5 HOH A1551 O 129.9 94.5 110.8 88.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 55 NE2 REMARK 620 2 KCX B 169 OQ1 102.8 REMARK 620 3 ASP B 301 OD2 82.7 172.1 REMARK 620 4 HOH B2609 O 120.0 87.3 94.9 REMARK 620 5 HIS B 57 NE2 109.6 86.5 86.3 130.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 230 NE2 REMARK 620 2 DII B2403 O1 137.4 REMARK 620 3 HOH B2609 O 105.3 69.3 REMARK 620 4 HIS B 201 ND1 93.0 73.6 140.6 REMARK 620 5 KCX B 169 OQ2 108.2 113.9 106.7 99.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DII A 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DII B 2403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EYW RELATED DB: PDB REMARK 900 1EYW CONTAINS THE SAME ENZYME COMPLEXED WITH TRIETHYLPHOSPHATE DBREF 1EZ2 A 35 365 UNP P0A434 OPD_BREDI 35 365 DBREF 1EZ2 B 35 365 UNP P0A434 OPD_BREDI 35 365 SEQADV 1EZ2 KCX A 169 UNP P0A434 LYS 169 MODIFIED RESIDUE SEQADV 1EZ2 KCX B 169 UNP P0A434 LYS 169 MODIFIED RESIDUE SEQRES 1 A 331 ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR ILE SER SEQRES 2 A 331 GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE CYS GLY SEQRES 3 A 331 SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU PHE PHE SEQRES 4 A 331 GLY SER ARG LYS ALA LEU ALA GLU LYS ALA VAL ARG GLY SEQRES 5 A 331 LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR ILE VAL SEQRES 6 A 331 ASP VAL SER THR PHE ASP ILE GLY ARG ASP VAL SER LEU SEQRES 7 A 331 LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS ILE VAL SEQRES 8 A 331 ALA ALA THR GLY LEU TRP PHE ASP PRO PRO LEU SER MET SEQRES 9 A 331 ARG LEU ARG SER VAL GLU GLU LEU THR GLN PHE PHE LEU SEQRES 10 A 331 ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY ILE ARG SEQRES 11 A 331 ALA GLY ILE ILE KCX VAL ALA THR THR GLY LYS ALA THR SEQRES 12 A 331 PRO PHE GLN GLU LEU VAL LEU LYS ALA ALA ALA ARG ALA SEQRES 13 A 331 SER LEU ALA THR GLY VAL PRO VAL THR THR HIS THR ALA SEQRES 14 A 331 ALA SER GLN ARG ASP GLY GLU GLN GLN ALA ALA ILE PHE SEQRES 15 A 331 GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS ILE GLY SEQRES 16 A 331 HIS SER ASP ASP THR ASP ASP LEU SER TYR LEU THR ALA SEQRES 17 A 331 LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP HIS ILE SEQRES 18 A 331 PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SER ALA SEQRES 19 A 331 SER ALA LEU LEU GLY ILE ARG SER TRP GLN THR ARG ALA SEQRES 20 A 331 LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR MET LYS SEQRES 21 A 331 GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY PHE SER SEQRES 22 A 331 SER TYR VAL THR ASN ILE MET ASP VAL MET ASP ARG VAL SEQRES 23 A 331 ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG VAL ILE SEQRES 24 A 331 PRO PHE LEU ARG GLU LYS GLY VAL PRO GLN GLU THR LEU SEQRES 25 A 331 ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE LEU SER SEQRES 26 A 331 PRO THR LEU ARG ALA SER SEQRES 1 B 331 ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR ILE SER SEQRES 2 B 331 GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE CYS GLY SEQRES 3 B 331 SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU PHE PHE SEQRES 4 B 331 GLY SER ARG LYS ALA LEU ALA GLU LYS ALA VAL ARG GLY SEQRES 5 B 331 LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR ILE VAL SEQRES 6 B 331 ASP VAL SER THR PHE ASP ILE GLY ARG ASP VAL SER LEU SEQRES 7 B 331 LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS ILE VAL SEQRES 8 B 331 ALA ALA THR GLY LEU TRP PHE ASP PRO PRO LEU SER MET SEQRES 9 B 331 ARG LEU ARG SER VAL GLU GLU LEU THR GLN PHE PHE LEU SEQRES 10 B 331 ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY ILE ARG SEQRES 11 B 331 ALA GLY ILE ILE KCX VAL ALA THR THR GLY LYS ALA THR SEQRES 12 B 331 PRO PHE GLN GLU LEU VAL LEU LYS ALA ALA ALA ARG ALA SEQRES 13 B 331 SER LEU ALA THR GLY VAL PRO VAL THR THR HIS THR ALA SEQRES 14 B 331 ALA SER GLN ARG ASP GLY GLU GLN GLN ALA ALA ILE PHE SEQRES 15 B 331 GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS ILE GLY SEQRES 16 B 331 HIS SER ASP ASP THR ASP ASP LEU SER TYR LEU THR ALA SEQRES 17 B 331 LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP HIS ILE SEQRES 18 B 331 PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SER ALA SEQRES 19 B 331 SER ALA LEU LEU GLY ILE ARG SER TRP GLN THR ARG ALA SEQRES 20 B 331 LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR MET LYS SEQRES 21 B 331 GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY PHE SER SEQRES 22 B 331 SER TYR VAL THR ASN ILE MET ASP VAL MET ASP ARG VAL SEQRES 23 B 331 ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG VAL ILE SEQRES 24 B 331 PRO PHE LEU ARG GLU LYS GLY VAL PRO GLN GLU THR LEU SEQRES 25 B 331 ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE LEU SER SEQRES 26 B 331 PRO THR LEU ARG ALA SER MODRES 1EZ2 KCX A 169 LYS LYSINE NZ-CARBOXYLIC ACID MODRES 1EZ2 KCX B 169 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 169 12 HET KCX B 169 12 HET ZN A 401 1 HET ZN A 402 1 HET DII A1403 11 HET ZN B 401 1 HET ZN B 402 1 HET DII B2403 11 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM DII METHYLPHOSPHONIC ACID DIISOPROPYL ESTER FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 ZN 4(ZN 2+) FORMUL 5 DII 2(C7 H17 O3 P) FORMUL 9 HOH *286(H2 O) HELIX 1 1 SER A 47 ALA A 49 5 3 HELIX 2 2 GLY A 64 TRP A 69 1 6 HELIX 3 3 PRO A 70 GLY A 74 5 5 HELIX 4 4 SER A 75 ALA A 93 1 19 HELIX 5 5 THR A 103 GLY A 107 5 5 HELIX 6 6 ASP A 109 ASP A 121 1 13 HELIX 7 7 PRO A 135 LEU A 140 1 6 HELIX 8 8 SER A 142 TYR A 156 1 15 HELIX 9 9 THR A 177 GLY A 195 1 19 HELIX 10 10 ALA A 203 GLN A 206 5 4 HELIX 11 11 ARG A 207 GLU A 219 1 13 HELIX 12 12 SER A 222 SER A 224 5 3 HELIX 13 13 HIS A 230 THR A 234 5 5 HELIX 14 14 ASP A 236 GLY A 247 1 12 HELIX 15 15 ASN A 265 GLY A 273 1 9 HELIX 16 16 SER A 276 GLN A 290 1 15 HELIX 17 17 TYR A 292 LYS A 294 5 3 HELIX 18 18 ASN A 312 ASN A 321 1 10 HELIX 19 19 ASP A 323 MET A 325 5 3 HELIX 20 20 ALA A 326 ARG A 331 1 6 HELIX 21 21 ARG A 331 LYS A 339 1 9 HELIX 22 22 PRO A 342 VAL A 351 1 10 HELIX 23 23 VAL A 351 SER A 359 1 9 HELIX 24 24 ILE B 46 GLY B 50 1 5 HELIX 25 25 GLY B 64 TRP B 69 1 6 HELIX 26 26 PRO B 70 GLY B 74 5 5 HELIX 27 27 SER B 75 ALA B 93 1 19 HELIX 28 28 THR B 103 GLY B 107 5 5 HELIX 29 29 ASP B 109 ASP B 121 1 13 HELIX 30 30 PRO B 135 LEU B 140 1 6 HELIX 31 31 SER B 142 TYR B 156 1 15 HELIX 32 32 THR B 177 GLY B 195 1 19 HELIX 33 33 ALA B 203 GLN B 206 5 4 HELIX 34 34 ARG B 207 GLU B 219 1 13 HELIX 35 35 SER B 222 SER B 224 5 3 HELIX 36 36 HIS B 230 THR B 234 5 5 HELIX 37 37 ASP B 236 ARG B 246 1 11 HELIX 38 38 ASN B 265 GLY B 273 1 9 HELIX 39 39 SER B 276 GLN B 290 1 15 HELIX 40 40 TYR B 292 LYS B 294 5 3 HELIX 41 41 ASN B 312 ASN B 321 1 10 HELIX 42 42 ASP B 323 MET B 325 5 3 HELIX 43 43 ALA B 326 ARG B 331 1 6 HELIX 44 44 ARG B 331 LYS B 339 1 9 HELIX 45 45 PRO B 342 VAL B 351 1 10 HELIX 46 46 VAL B 351 SER B 359 1 9 SHEET 1 A 2 ARG A 36 THR A 39 0 SHEET 2 A 2 GLY A 42 THR A 45 -1 N GLY A 42 O THR A 39 SHEET 1 B 3 THR A 52 GLU A 56 0 SHEET 2 B 3 THR A 97 ASP A 100 1 O THR A 97 N LEU A 53 SHEET 3 B 3 HIS A 123 VAL A 125 1 O HIS A 123 N ILE A 98 SHEET 1 C 2 CYS A 59 GLY A 60 0 SHEET 2 C 2 GLY A 305 PHE A 306 1 O GLY A 305 N GLY A 60 SHEET 1 D 5 ILE A 168 ALA A 171 0 SHEET 2 D 5 VAL A 198 HIS A 201 1 N THR A 199 O ILE A 168 SHEET 3 D 5 VAL A 226 ILE A 228 1 O CYS A 227 N THR A 200 SHEET 4 D 5 LEU A 249 LEU A 252 1 O LEU A 249 N ILE A 228 SHEET 5 D 5 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252 SHEET 1 E 2 ARG B 36 THR B 39 0 SHEET 2 E 2 GLY B 42 THR B 45 -1 N GLY B 42 O THR B 39 SHEET 1 F 3 THR B 52 GLU B 56 0 SHEET 2 F 3 THR B 97 ASP B 100 1 O THR B 97 N LEU B 53 SHEET 3 F 3 HIS B 123 VAL B 125 1 O HIS B 123 N ILE B 98 SHEET 1 G 2 CYS B 59 GLY B 60 0 SHEET 2 G 2 GLY B 305 PHE B 306 1 O GLY B 305 N GLY B 60 SHEET 1 H 5 ILE B 168 ALA B 171 0 SHEET 2 H 5 VAL B 198 HIS B 201 1 N THR B 199 O ILE B 168 SHEET 3 H 5 VAL B 226 ILE B 228 1 O CYS B 227 N THR B 200 SHEET 4 H 5 LEU B 249 LEU B 252 1 O LEU B 249 N ILE B 228 SHEET 5 H 5 ILE B 296 VAL B 298 1 O LEU B 297 N LEU B 252 LINK C ILE A 168 N KCX A 169 1555 1555 1.31 LINK C KCX A 169 N VAL A 170 1555 1555 1.34 LINK OQ1 KCX A 169 ZN ZN A 402 1555 1555 1.85 LINK ZN ZN A 401 NE2 HIS A 57 1555 1555 2.04 LINK ZN ZN A 401 OQ2 KCX A 169 1555 1555 2.30 LINK ZN ZN A 401 NE2 HIS A 55 1555 1555 1.73 LINK ZN ZN A 401 OD2 ASP A 301 1555 1555 2.33 LINK ZN ZN A 401 O HOH A1551 1555 1555 2.20 LINK ZN ZN A 402 ND1 HIS A 201 1555 1555 2.30 LINK ZN ZN A 402 NE2 HIS A 230 1555 1555 1.97 LINK ZN ZN A 402 O HOH A1551 1555 1555 2.09 LINK ZN ZN A 402 O1 DII A1403 1555 1555 2.54 LINK C ILE B 168 N KCX B 169 1555 1555 1.32 LINK C KCX B 169 N VAL B 170 1555 1555 1.36 LINK ZN ZN B 401 NE2 HIS B 55 1555 1555 1.78 LINK ZN ZN B 401 OQ1 KCX B 169 1555 1555 2.24 LINK ZN ZN B 401 OD2 ASP B 301 1555 1555 2.28 LINK ZN ZN B 401 O HOH B2609 1555 1555 2.11 LINK ZN ZN B 401 NE2 HIS B 57 1555 1555 2.08 LINK ZN ZN B 402 NE2 HIS B 230 1555 1555 2.01 LINK ZN ZN B 402 O1 DII B2403 1555 1555 2.57 LINK ZN ZN B 402 O HOH B2609 1555 1555 1.95 LINK ZN ZN B 402 ND1 HIS B 201 1555 1555 2.04 LINK ZN ZN B 402 OQ2 KCX B 169 1555 1555 2.07 SITE 1 AC1 6 HIS A 55 HIS A 57 KCX A 169 ASP A 301 SITE 2 AC1 6 ZN A 402 HOH A1551 SITE 1 AC2 6 KCX A 169 HIS A 201 HIS A 230 ZN A 401 SITE 2 AC2 6 DII A1403 HOH A1551 SITE 1 AC3 6 HIS B 55 HIS B 57 KCX B 169 ASP B 301 SITE 2 AC3 6 ZN B 402 HOH B2609 SITE 1 AC4 6 KCX B 169 HIS B 201 HIS B 230 ZN B 401 SITE 2 AC4 6 DII B2403 HOH B2609 SITE 1 AC5 6 HIS A 57 TRP A 131 HIS A 201 SER A 308 SITE 2 AC5 6 ZN A 402 HOH A1551 SITE 1 AC6 7 TRP B 131 PHE B 132 HIS B 201 LEU B 271 SITE 2 AC6 7 ASP B 301 ZN B 402 HOH B2609 CRYST1 129.400 91.000 69.200 90.00 91.60 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007728 0.000000 0.000216 0.00000 SCALE2 0.000000 0.010989 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014457 0.00000 MASTER 386 0 8 46 24 0 12 6 0 0 0 52 END