HEADER COMPLEX (HYDROLASE/INHIBITOR) 18-JUN-98 1EUI TITLE ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE COMPLEX WITH URACIL- TITLE 2 DNA GLYCOSYLASE INHIBITOR PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: URACIL-DNA GLYCOSYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ECUDG; COMPND 5 EC: 3.2.2.-; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: UGI SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: BACILLUS PHAGE PBS2; SOURCE 6 ORGANISM_TAXID: 10684 KEYWDS GLYCOSYLASE, INHIBITOR, DNA REPAIR, BASE EXCISION, COMPLEX KEYWDS 2 (HYDROLASE/INHIBITOR) EXPDTA X-RAY DIFFRACTION AUTHOR R.RAVISHANKAR,M.B.SAGAR,S.ROY,K.PURNAPATRE,P.HANDA, AUTHOR 2 U.VARSHNEY,M.VIJAYAN REVDAT 2 24-FEB-09 1EUI 1 VERSN REVDAT 1 22-JUN-99 1EUI 0 JRNL AUTH R.RAVISHANKAR,M.BIDYA SAGAR,S.ROY,K.PURNAPATRE, JRNL AUTH 2 P.HANDA,U.VARSHNEY,M.VIJAYAN JRNL TITL X-RAY ANALYSIS OF A COMPLEX OF ESCHERICHIA COLI JRNL TITL 2 URACIL DNA GLYCOSYLASE (ECUDG) WITH A JRNL TITL 3 PROTEINACEOUS INHIBITOR. THE STRUCTURE ELUCIDATION JRNL TITL 4 OF A PROKARYOTIC UDG. JRNL REF NUCLEIC ACIDS RES. V. 26 4880 1998 JRNL REFN ISSN 0305-1048 JRNL PMID 9776748 JRNL DOI 10.1093/NAR/26.21.4880 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.ROY,K.PURNAPATRE,P.HANDA,M.BOYANAPALLI,U.VARSHNEY REMARK 1 TITL USE OF A COUPLED TRANSCRIPTIONAL SYSTEM FOR REMARK 1 TITL 2 CONSISTENT OVEREXPRESSION AND PURIFICATION OF REMARK 1 TITL 3 UDG-UGI COMPLEX AND UGI FROM ESCHERICHIA COLI REMARK 1 REF PROTEIN EXPR.PURIF. V. 13 155 1998 REMARK 1 REFN ISSN 1046-5928 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 9936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1028 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.39 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1286 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 154 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.029 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4573 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 10.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.38 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.80 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.58 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAIN REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : WAT.PAR REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : WAT.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EUI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JAN-98 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11074 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.47100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: PDB ENTRY 1UGI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.68650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.06600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.88600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.06600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.68650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.88600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: REMARK 300 THERE ARE TWO ECUDG-UGI COMPLEXES IN THE ASYMMETRIC UNIT REMARK 300 CHAINS A AND C FORM ONE COMPLEX WHILE CHAINS B AND D FORM REMARK 300 THE OTHER COMPLEX. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 GLU A 4 REMARK 465 LEU A 5 REMARK 465 GLU A 227 REMARK 465 SER A 228 REMARK 465 GLU A 229 REMARK 465 ALA B 2 REMARK 465 ASN B 3 REMARK 465 GLU B 4 REMARK 465 LEU B 5 REMARK 465 ALA B 226 REMARK 465 GLU B 227 REMARK 465 SER B 228 REMARK 465 GLU B 229 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ASN C 3 REMARK 465 LEU C 4 REMARK 465 SER C 5 REMARK 465 ASP C 6 REMARK 465 ILE C 7 REMARK 465 ILE C 8 REMARK 465 GLU C 9 REMARK 465 LYS C 10 REMARK 465 GLU C 11 REMARK 465 THR C 12 REMARK 465 GLY C 13 REMARK 465 LYS C 14 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ASN D 3 REMARK 465 LEU D 4 REMARK 465 SER D 5 REMARK 465 ASP D 6 REMARK 465 ILE D 7 REMARK 465 ILE D 8 REMARK 465 GLU D 9 REMARK 465 LYS D 10 REMARK 465 GLU D 11 REMARK 465 THR D 12 REMARK 465 GLY D 13 REMARK 465 LYS D 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 9 CG OD1 OD2 REMARK 470 LEU A 11 CG CD1 CD2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 ARG A 195 CG CD NE CZ NH1 NH2 REMARK 470 THR B 6 OG1 CG2 REMARK 470 VAL B 10 CG1 CG2 REMARK 470 LYS B 171 CG CD CE NZ REMARK 470 LYS B 177 CG CD CE NZ REMARK 470 ARG B 179 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 195 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 211 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 51 CB THR A 51 CG2 -0.198 REMARK 500 ALA A 226 C ALA A 226 O 0.122 REMARK 500 TRP B 209 CG TRP B 209 CD1 -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 38 N - CA - C ANGL. DEV. = 19.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 7 -1.71 73.20 REMARK 500 ASP A 9 -85.99 -138.71 REMARK 500 LEU A 11 -47.64 176.70 REMARK 500 TYR A 38 -97.88 -71.59 REMARK 500 PRO A 39 100.50 -39.08 REMARK 500 GLN A 41 -15.07 -45.43 REMARK 500 VAL A 56 97.31 -52.49 REMARK 500 GLN A 63 -104.60 -79.17 REMARK 500 GLN A 71 -71.54 -84.38 REMARK 500 HIS A 73 21.35 -144.61 REMARK 500 PHE A 77 -45.33 70.29 REMARK 500 PRO A 81 3.29 -46.61 REMARK 500 PRO A 101 2.45 -66.42 REMARK 500 PHE A 103 -175.28 -41.74 REMARK 500 THR A 104 169.61 172.56 REMARK 500 PRO A 106 -91.52 -62.38 REMARK 500 ASN A 107 14.12 154.57 REMARK 500 ALA A 137 45.26 -87.45 REMARK 500 SER A 138 12.55 -161.07 REMARK 500 LYS A 170 -118.66 50.42 REMARK 500 LYS A 171 -71.94 -9.35 REMARK 500 ALA A 173 70.09 -168.77 REMARK 500 ASP A 176 98.33 -67.57 REMARK 500 PRO A 188 -9.98 -58.50 REMARK 500 LEU A 191 26.53 -76.11 REMARK 500 SER A 192 -35.55 -166.78 REMARK 500 ARG A 195 49.07 30.35 REMARK 500 PHE A 198 -10.90 -45.02 REMARK 500 PRO A 222 -169.55 -54.36 REMARK 500 VAL A 223 -128.45 -164.36 REMARK 500 LEU A 224 68.47 162.71 REMARK 500 PRO A 225 -174.50 -61.12 REMARK 500 TRP B 7 -19.28 66.66 REMARK 500 VAL B 10 -26.06 67.96 REMARK 500 TYR B 38 -115.11 -71.70 REMARK 500 PRO B 39 90.67 -23.34 REMARK 500 PRO B 40 139.17 -38.94 REMARK 500 VAL B 44 -38.40 -34.02 REMARK 500 VAL B 56 92.73 -49.66 REMARK 500 GLN B 63 -102.06 -86.94 REMARK 500 HIS B 73 16.37 -152.17 REMARK 500 PHE B 77 -39.42 64.70 REMARK 500 PRO B 81 -2.15 -44.24 REMARK 500 PRO B 101 8.06 -65.11 REMARK 500 THR B 104 -120.99 -115.08 REMARK 500 PRO B 106 -162.51 -77.55 REMARK 500 ALA B 137 41.46 -85.06 REMARK 500 SER B 138 11.23 -152.58 REMARK 500 LYS B 170 -124.63 55.35 REMARK 500 LYS B 171 -84.00 3.20 REMARK 500 ALA B 173 65.89 -169.24 REMARK 500 ASP B 176 94.30 -61.81 REMARK 500 LYS B 177 12.62 -59.73 REMARK 500 ALA B 185 163.21 177.96 REMARK 500 LEU B 191 26.48 -76.11 REMARK 500 SER B 192 -35.52 -166.72 REMARK 500 ARG B 195 29.19 -64.28 REMARK 500 PHE B 198 -16.66 -43.52 REMARK 500 PRO B 222 -168.81 -52.74 REMARK 500 VAL B 223 167.98 172.54 REMARK 500 LEU C 16 101.49 -43.44 REMARK 500 SER C 39 -173.08 -177.62 REMARK 500 SER C 50 -82.11 -65.47 REMARK 500 LEU D 16 93.17 -18.40 REMARK 500 SER D 39 -167.54 -170.35 REMARK 500 SER D 50 -81.33 -69.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 19 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 260 DISTANCE = 5.53 ANGSTROMS DBREF 1EUI A 2 229 UNP P12295 UNG_ECOLI 1 228 DBREF 1EUI B 2 229 UNP P12295 UNG_ECOLI 1 228 DBREF 1EUI C 1 84 UNP P14739 UNGI_BPPB2 1 84 DBREF 1EUI D 1 84 UNP P14739 UNGI_BPPB2 1 84 SEQRES 1 A 228 ALA ASN GLU LEU THR TRP HIS ASP VAL LEU ALA GLU GLU SEQRES 2 A 228 LYS GLN GLN PRO TYR PHE LEU ASN THR LEU GLN THR VAL SEQRES 3 A 228 ALA SER GLU ARG GLN SER GLY VAL THR ILE TYR PRO PRO SEQRES 4 A 228 GLN LYS ASP VAL PHE ASN ALA PHE ARG PHE THR GLU LEU SEQRES 5 A 228 GLY ASP VAL LYS VAL VAL ILE LEU GLY GLN ASP PRO TYR SEQRES 6 A 228 HIS GLY PRO GLY GLN ALA HIS GLY LEU ALA PHE SER VAL SEQRES 7 A 228 ARG PRO GLY ILE ALA ILE PRO PRO SER LEU LEU ASN MET SEQRES 8 A 228 TYR LYS GLU LEU GLU ASN THR ILE PRO GLY PHE THR ARG SEQRES 9 A 228 PRO ASN HIS GLY TYR LEU GLU SER TRP ALA ARG GLN GLY SEQRES 10 A 228 VAL LEU LEU LEU ASN THR VAL LEU THR VAL ARG ALA GLY SEQRES 11 A 228 GLN ALA HIS SER HIS ALA SER LEU GLY TRP GLU THR PHE SEQRES 12 A 228 THR ASP LYS VAL ILE SER LEU ILE ASN GLN HIS ARG GLU SEQRES 13 A 228 GLY VAL VAL PHE LEU LEU TRP GLY SER HIS ALA GLN LYS SEQRES 14 A 228 LYS GLY ALA ILE ILE ASP LYS GLN ARG HIS HIS VAL LEU SEQRES 15 A 228 LYS ALA PRO HIS PRO SER PRO LEU SER ALA HIS ARG GLY SEQRES 16 A 228 PHE PHE GLY CYS ASN HIS PHE VAL LEU ALA ASN GLN TRP SEQRES 17 A 228 LEU GLU GLN ARG GLY GLU THR PRO ILE ASP TRP MET PRO SEQRES 18 A 228 VAL LEU PRO ALA GLU SER GLU SEQRES 1 B 228 ALA ASN GLU LEU THR TRP HIS ASP VAL LEU ALA GLU GLU SEQRES 2 B 228 LYS GLN GLN PRO TYR PHE LEU ASN THR LEU GLN THR VAL SEQRES 3 B 228 ALA SER GLU ARG GLN SER GLY VAL THR ILE TYR PRO PRO SEQRES 4 B 228 GLN LYS ASP VAL PHE ASN ALA PHE ARG PHE THR GLU LEU SEQRES 5 B 228 GLY ASP VAL LYS VAL VAL ILE LEU GLY GLN ASP PRO TYR SEQRES 6 B 228 HIS GLY PRO GLY GLN ALA HIS GLY LEU ALA PHE SER VAL SEQRES 7 B 228 ARG PRO GLY ILE ALA ILE PRO PRO SER LEU LEU ASN MET SEQRES 8 B 228 TYR LYS GLU LEU GLU ASN THR ILE PRO GLY PHE THR ARG SEQRES 9 B 228 PRO ASN HIS GLY TYR LEU GLU SER TRP ALA ARG GLN GLY SEQRES 10 B 228 VAL LEU LEU LEU ASN THR VAL LEU THR VAL ARG ALA GLY SEQRES 11 B 228 GLN ALA HIS SER HIS ALA SER LEU GLY TRP GLU THR PHE SEQRES 12 B 228 THR ASP LYS VAL ILE SER LEU ILE ASN GLN HIS ARG GLU SEQRES 13 B 228 GLY VAL VAL PHE LEU LEU TRP GLY SER HIS ALA GLN LYS SEQRES 14 B 228 LYS GLY ALA ILE ILE ASP LYS GLN ARG HIS HIS VAL LEU SEQRES 15 B 228 LYS ALA PRO HIS PRO SER PRO LEU SER ALA HIS ARG GLY SEQRES 16 B 228 PHE PHE GLY CYS ASN HIS PHE VAL LEU ALA ASN GLN TRP SEQRES 17 B 228 LEU GLU GLN ARG GLY GLU THR PRO ILE ASP TRP MET PRO SEQRES 18 B 228 VAL LEU PRO ALA GLU SER GLU SEQRES 1 C 84 MET THR ASN LEU SER ASP ILE ILE GLU LYS GLU THR GLY SEQRES 2 C 84 LYS GLN LEU VAL ILE GLN GLU SER ILE LEU MET LEU PRO SEQRES 3 C 84 GLU GLU VAL GLU GLU VAL ILE GLY ASN LYS PRO GLU SER SEQRES 4 C 84 ASP ILE LEU VAL HIS THR ALA TYR ASP GLU SER THR ASP SEQRES 5 C 84 GLU ASN VAL MET LEU LEU THR SER ASP ALA PRO GLU TYR SEQRES 6 C 84 LYS PRO TRP ALA LEU VAL ILE GLN ASP SER ASN GLY GLU SEQRES 7 C 84 ASN LYS ILE LYS MET LEU SEQRES 1 D 84 MET THR ASN LEU SER ASP ILE ILE GLU LYS GLU THR GLY SEQRES 2 D 84 LYS GLN LEU VAL ILE GLN GLU SER ILE LEU MET LEU PRO SEQRES 3 D 84 GLU GLU VAL GLU GLU VAL ILE GLY ASN LYS PRO GLU SER SEQRES 4 D 84 ASP ILE LEU VAL HIS THR ALA TYR ASP GLU SER THR ASP SEQRES 5 D 84 GLU ASN VAL MET LEU LEU THR SER ASP ALA PRO GLU TYR SEQRES 6 D 84 LYS PRO TRP ALA LEU VAL ILE GLN ASP SER ASN GLY GLU SEQRES 7 D 84 ASN LYS ILE LYS MET LEU FORMUL 5 HOH *116(H2 O) HELIX 1 1 GLU A 14 GLN A 16 5 3 HELIX 2 2 PRO A 18 SER A 33 1 16 HELIX 3 3 ASN A 46 PHE A 50 1 5 HELIX 4 4 LEU A 53 ASP A 55 5 3 HELIX 5 5 PRO A 87 THR A 99 1 13 HELIX 6 6 GLU A 112 GLN A 117 1 6 HELIX 7 7 TRP A 141 HIS A 155 1 15 HELIX 8 8 GLY A 165 ALA A 168 1 4 HELIX 9 9 LYS A 170 GLY A 172 5 3 HELIX 10 10 PRO A 190 ALA A 193 1 4 HELIX 11 11 HIS A 202 GLN A 212 1 11 HELIX 12 12 LEU B 11 GLN B 16 1 6 HELIX 13 13 PRO B 18 SER B 33 1 16 HELIX 14 14 GLN B 41 VAL B 44 1 4 HELIX 15 15 ASN B 46 PHE B 50 1 5 HELIX 16 16 LEU B 53 ASP B 55 5 3 HELIX 17 17 PRO B 87 THR B 99 1 13 HELIX 18 18 GLU B 112 GLN B 117 1 6 HELIX 19 19 TRP B 141 HIS B 155 1 15 HELIX 20 20 GLY B 165 ALA B 168 1 4 HELIX 21 21 PRO B 190 ALA B 193 1 4 HELIX 22 22 HIS B 202 ARG B 213 1 12 HELIX 23 23 PRO C 26 ILE C 33 1 8 HELIX 24 24 PRO D 26 ILE D 33 1 8 SHEET 1 A 4 VAL A 119 ASN A 123 0 SHEET 2 A 4 VAL A 58 GLY A 62 1 N VAL A 58 O LEU A 120 SHEET 3 A 4 VAL A 160 TRP A 164 1 N VAL A 160 O VAL A 59 SHEET 4 A 4 HIS A 181 ALA A 185 1 N HIS A 181 O PHE A 161 SHEET 1 B 4 VAL B 119 ASN B 123 0 SHEET 2 B 4 VAL B 58 GLY B 62 1 N VAL B 58 O LEU B 120 SHEET 3 B 4 VAL B 160 TRP B 164 1 N VAL B 160 O VAL B 59 SHEET 4 B 4 HIS B 181 ALA B 185 1 N HIS B 181 O PHE B 161 SHEET 1 C 5 GLU C 20 MET C 24 0 SHEET 2 C 5 ILE C 41 ASP C 48 -1 N THR C 45 O GLU C 20 SHEET 3 C 5 GLU C 53 SER C 60 -1 N THR C 59 O LEU C 42 SHEET 4 C 5 PRO C 67 GLN C 73 -1 N GLN C 73 O ASN C 54 SHEET 5 C 5 ASN C 79 MET C 83 -1 N LYS C 82 O LEU C 70 SHEET 1 D 5 GLU D 20 MET D 24 0 SHEET 2 D 5 ILE D 41 ASP D 48 -1 N THR D 45 O GLU D 20 SHEET 3 D 5 GLU D 53 SER D 60 -1 N THR D 59 O LEU D 42 SHEET 4 D 5 PRO D 67 GLN D 73 -1 N GLN D 73 O ASN D 54 SHEET 5 D 5 ASN D 79 MET D 83 -1 N LYS D 82 O LEU D 70 CISPEP 1 ALA C 62 PRO C 63 0 -0.30 CISPEP 2 ALA D 62 PRO D 63 0 1.85 CRYST1 51.373 89.772 142.132 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019465 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011139 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007036 0.00000 MASTER 433 0 0 24 18 0 0 6 0 0 0 50 END