HEADER VIRAL PROTEIN 11-APR-00 1ESX TITLE 1H, 15N AND 13C STRUCTURE OF THE HIV-1 REGULATORY PROTEIN VPR : TITLE 2 COMPARISON WITH THE N-AND C-TERMINAL DOMAIN STRUCTURE, (1-51)VPR AND TITLE 3 (52-96)VPR COMPND MOL_ID: 1; COMPND 2 MOLECULE: VPR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VIRAL PROTEIN OF REGULATION; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE HAS BEEN OBTAINED BY SOLID PHASE SOURCE 4 SYNTHESIS. THE SEQUENCE OF THIS PROTEIN IS NATURALLY FOUND IN HUMAN SOURCE 5 IMMUNODEFICIENCY VIRUS TYPE 1 (HIV-1). KEYWDS HELIX, AMPHIPATIC, TURN, VIRAL PROTEIN EXPDTA SOLUTION NMR AUTHOR K.WECKER,N.MORELLET,S.BOUAZIZ,B.ROQUES REVDAT 5 27-MAR-13 1ESX 1 REMARK VERSN REVDAT 4 24-FEB-09 1ESX 1 VERSN REVDAT 3 01-APR-03 1ESX 1 JRNL REVDAT 2 30-OCT-02 1ESX 1 JRNL REVDAT 1 11-APR-01 1ESX 0 JRNL AUTH K.WECKER,N.MORELLET,S.BOUAZIZ,B.P.ROQUES JRNL TITL NMR STRUCTURE OF THE HIV-1 REGULATORY PROTEIN VPR IN JRNL TITL 2 H2O/TRIFLUOROETHANOL. COMPARISON WITH THE VPR N-TERMINAL JRNL TITL 3 (1-51) AND C-TERMINAL (52-96) DOMAINS. JRNL REF EUR.J.BIOCHEM. V. 269 3779 2002 JRNL REFN ISSN 0014-2956 JRNL PMID 12153575 JRNL DOI 10.1046/J.1432-1033.2002.03067.X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER 98.0 REMARK 3 AUTHORS : MSI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE IS BASED ON A TOTAL OF REMARK 3 1420 DISTANCE CONSTRAINTS REMARK 4 REMARK 4 1ESX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-00. REMARK 100 THE RCSB ID CODE IS RCSB010865. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 323; 313 REMARK 210 PH : 3.4; 3.4 REMARK 210 IONIC STRENGTH : 0; 0 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM VPR 15N, 13C ; 10 MM DTT ; REMARK 210 HMDS ; 70 % H2O ; 30 % TFE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY; HSQC (15N, REMARK 210 13C); HSQC-NOESY (15N, 13C); HSQC REMARK 210 -TOCSY(15N, 13C) REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DISCOVER 98.0, XWINNMR 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS, MINIMISATIONS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY,STRUCTURES WITH REMARK 210 FAVORABLE NON-BOND ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 20 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES, 2D HETERONUCLEAR TECHNIQUES AND REMARK 210 RELAXATION EXPERIMENTS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 2 CD GLU A 2 OE2 0.111 REMARK 500 GLU A 6 CD GLU A 6 OE2 0.112 REMARK 500 GLU A 13 CD GLU A 13 OE2 0.112 REMARK 500 GLU A 21 CD GLU A 21 OE2 0.112 REMARK 500 GLU A 24 CD GLU A 24 OE2 0.112 REMARK 500 GLU A 25 CD GLU A 25 OE2 0.111 REMARK 500 GLU A 29 CD GLU A 29 OE2 0.112 REMARK 500 GLU A 48 CD GLU A 48 OE2 0.112 REMARK 500 GLU A 58 CD GLU A 58 OE2 0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 87 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 6 -48.58 -161.34 REMARK 500 GLN A 8 -54.44 -153.83 REMARK 500 PRO A 14 36.79 -64.80 REMARK 500 TYR A 15 -125.50 -143.41 REMARK 500 ASN A 16 -126.34 55.95 REMARK 500 ARG A 36 -68.28 -100.98 REMARK 500 ILE A 37 97.70 -2.12 REMARK 500 TRP A 38 -79.14 -147.37 REMARK 500 GLU A 48 -73.74 -69.68 REMARK 500 THR A 55 -57.15 -145.84 REMARK 500 HIS A 78 54.09 -91.11 REMARK 500 SER A 79 -58.05 -161.12 REMARK 500 ILE A 84 42.19 -106.82 REMARK 500 SER A 94 86.97 -55.43 REMARK 500 LYS A 95 -63.96 -140.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 50 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 PHE A 34 21.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 1ESX A 1 96 UNP Q73369 Q73369_9HIV1 1 96 SEQRES 1 A 96 MET GLU GLN ALA PRO GLU ASP GLN GLY PRO GLN ARG GLU SEQRES 2 A 96 PRO TYR ASN ASP TRP THR LEU GLU LEU LEU GLU GLU LEU SEQRES 3 A 96 LYS ASN GLU ALA VAL ARG HIS PHE PRO ARG ILE TRP LEU SEQRES 4 A 96 HIS SER LEU GLY GLN HIS ILE TYR GLU THR TYR GLY ASP SEQRES 5 A 96 THR TRP THR GLY VAL GLU ALA LEU ILE ARG ILE LEU GLN SEQRES 6 A 96 GLN LEU LEU PHE ILE HIS PHE ARG ILE GLY CYS ARG HIS SEQRES 7 A 96 SER ARG ILE GLY ILE ILE GLN GLN ARG ARG THR ARG ASN SEQRES 8 A 96 GLY ALA SER LYS SER HELIX 1 1 ASN A 16 HIS A 33 1 18 HELIX 2 2 TRP A 38 TYR A 50 1 13 HELIX 3 3 THR A 55 ILE A 81 1 27 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 187 0 0 3 0 0 0 6 0 0 0 8 END