HEADER DNA 31-JAN-00 1EEG TITLE A(GGGG)A HEXAD PAIRING ALIGMENT FOR THE D(G-G-A-G-G-A-G) TITLE 2 SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*GP*AP*GP*GP*A)-3'); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS A*(GGGG)*A HEXAD FORMATION; G*(A-G) TRIADS, G-QUADRUPLEX KEYWDS 2 RECOGNITION, SHEARED G*A MISMATCH FORMATION, UNIFORM 13C, KEYWDS 3 15N-LABELED DNA EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.KETTANI,A.GORIN,A.MAJUMDAR,T.HERMANN,E.SKRIPKIN,H.ZHAO, AUTHOR 2 R.JONES,D.J.PATEL REVDAT 2 24-FEB-09 1EEG 1 VERSN REVDAT 1 02-APR-00 1EEG 0 JRNL AUTH A.KETTANI,A.GORIN,A.MAJUMDAR,T.HERMANN,E.SKRIPKIN, JRNL AUTH 2 H.ZHAO,R.JONES,D.J.PATEL JRNL TITL A DIMERIC DNA INTERFACE STABILIZED BY STACKED JRNL TITL 2 A.(G.G.G.G).A HEXADS AND COORDINATED MONOVALENT JRNL TITL 3 CATIONS. JRNL REF J.MOL.BIOL. V. 297 627 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10731417 JRNL DOI 10.1006/JMBI.2000.3524 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.81 REMARK 3 AUTHORS : BRUNGER, A.T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EEG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-00. REMARK 100 THE RCSB ID CODE IS RCSB010493. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 273; 293 REMARK 210 PH : 6.6; 6.6 REMARK 210 IONIC STRENGTH : 150MM; 150MM REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : D(G-G-A-G-G-A-G) IN 150MM REMARK 210 NACL, 10 MM PHOSPHATE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, H2O NOESY, H(CN) REMARK 210 N(H)-COSY IN THE UNIFORM 13C, REMARK 210 15N REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.81 REMARK 210 METHOD USED : DESCRIBED IN THE CITED PAPER REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: N/A REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 DG B 2 C5' DG B 2 C4' 0.057 REMARK 500 1 DG D 2 C5' DG D 2 C4' 0.051 REMARK 500 1 DA D 6 C5' DA D 6 C4' -0.073 REMARK 500 2 DG A 2 C5' DG A 2 C4' 0.048 REMARK 500 2 DG B 5 C3' DG B 5 C2' -0.060 REMARK 500 2 DG C 2 C5' DG C 2 C4' 0.046 REMARK 500 2 DG D 2 C5' DG D 2 C4' 0.047 REMARK 500 3 DG A 2 C5' DG A 2 C4' 0.052 REMARK 500 3 DG B 2 C5' DG B 2 C4' 0.054 REMARK 500 3 DG C 2 C5' DG C 2 C4' 0.048 REMARK 500 4 DG A 2 C5' DG A 2 C4' 0.050 REMARK 500 4 DG C 2 C5' DG C 2 C4' 0.048 REMARK 500 4 DG D 2 C5' DG D 2 C4' 0.045 REMARK 500 4 DA D 6 C5' DA D 6 C4' -0.066 REMARK 500 5 DG A 2 C5' DG A 2 C4' 0.098 REMARK 500 5 DG B 2 C5' DG B 2 C4' 0.071 REMARK 500 5 DG B 2 C4' DG B 2 C3' 0.067 REMARK 500 5 DG C 2 C5' DG C 2 C4' 0.064 REMARK 500 5 DG D 2 C5' DG D 2 C4' 0.119 REMARK 500 6 DG A 2 C5' DG A 2 C4' 0.104 REMARK 500 6 DG B 2 C5' DG B 2 C4' 0.102 REMARK 500 6 DG C 2 C5' DG C 2 C4' 0.094 REMARK 500 6 DG D 2 C5' DG D 2 C4' 0.084 REMARK 500 7 DG A 2 C5' DG A 2 C4' 0.071 REMARK 500 7 DG A 5 C3' DG A 5 C2' -0.065 REMARK 500 7 DG B 2 C5' DG B 2 C4' 0.046 REMARK 500 7 DG C 2 C5' DG C 2 C4' 0.052 REMARK 500 8 DG A 2 C5' DG A 2 C4' 0.059 REMARK 500 8 DG A 5 C3' DG A 5 C2' -0.061 REMARK 500 8 DG C 2 C5' DG C 2 C4' 0.065 REMARK 500 8 DG D 2 C5' DG D 2 C4' 0.046 REMARK 500 9 DG A 2 C5' DG A 2 C4' 0.084 REMARK 500 9 DG B 2 C5' DG B 2 C4' 0.082 REMARK 500 9 DG C 2 C5' DG C 2 C4' 0.066 REMARK 500 9 DG D 2 C5' DG D 2 C4' 0.076 REMARK 500 10 DG A 2 C5' DG A 2 C4' 0.102 REMARK 500 10 DG A 4 C6 DG A 4 N1 -0.044 REMARK 500 10 DG B 2 C5' DG B 2 C4' 0.087 REMARK 500 10 DG C 2 C5' DG C 2 C4' 0.109 REMARK 500 10 DG D 2 C5' DG D 2 C4' 0.076 REMARK 500 10 DG D 5 C3' DG D 5 C2' -0.052 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DG A 1 C4' - C3' - C2' ANGL. DEV. = -4.8 DEGREES REMARK 500 1 DA A 3 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 DG A 4 N9 - C1' - C2' ANGL. DEV. = 11.6 DEGREES REMARK 500 1 DG A 5 O4' - C1' - C2' ANGL. DEV. = -9.0 DEGREES REMARK 500 1 DG A 5 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 1 DA A 6 C4' - C3' - C2' ANGL. DEV. = -4.5 DEGREES REMARK 500 1 DA A 6 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 1 DA A 6 O4' - C1' - C2' ANGL. DEV. = -5.6 DEGREES REMARK 500 1 DG B 1 O4' - C1' - C2' ANGL. DEV. = -8.4 DEGREES REMARK 500 1 DG B 2 N3 - C2 - N2 ANGL. DEV. = -4.5 DEGREES REMARK 500 1 DG B 4 C4' - C3' - C2' ANGL. DEV. = -6.1 DEGREES REMARK 500 1 DG B 4 O4' - C1' - C2' ANGL. DEV. = -9.2 DEGREES REMARK 500 1 DG B 5 C1' - O4' - C4' ANGL. DEV. = -7.9 DEGREES REMARK 500 1 DG B 5 O4' - C1' - C2' ANGL. DEV. = -7.5 DEGREES REMARK 500 1 DG B 5 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 1 DA B 6 C4' - C3' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 1 DA B 6 O4' - C1' - C2' ANGL. DEV. = -6.4 DEGREES REMARK 500 1 DA B 6 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DG C 1 O4' - C4' - C3' ANGL. DEV. = -5.4 DEGREES REMARK 500 1 DG C 1 C1' - O4' - C4' ANGL. DEV. = -10.1 DEGREES REMARK 500 1 DG C 2 O4' - C1' - C2' ANGL. DEV. = -6.9 DEGREES REMARK 500 1 DA C 3 O4' - C1' - N9 ANGL. DEV. = 6.2 DEGREES REMARK 500 1 DG C 4 N9 - C1' - C2' ANGL. DEV. = 12.1 DEGREES REMARK 500 1 DG C 5 O4' - C1' - C2' ANGL. DEV. = -10.4 DEGREES REMARK 500 1 DA C 6 C4' - C3' - C2' ANGL. DEV. = -5.6 DEGREES REMARK 500 1 DA C 6 O4' - C1' - C2' ANGL. DEV. = -6.7 DEGREES REMARK 500 1 DG D 1 C4' - C3' - C2' ANGL. DEV. = -4.2 DEGREES REMARK 500 1 DG D 1 O4' - C1' - C2' ANGL. DEV. = -5.7 DEGREES REMARK 500 1 DG D 1 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 DG D 2 O4' - C1' - C2' ANGL. DEV. = -6.2 DEGREES REMARK 500 1 DA D 3 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 1 DA D 3 N9 - C1' - C2' ANGL. DEV. = 9.3 DEGREES REMARK 500 1 DG D 4 O4' - C1' - C2' ANGL. DEV. = -6.5 DEGREES REMARK 500 1 DG D 5 O4' - C1' - C2' ANGL. DEV. = -6.8 DEGREES REMARK 500 1 DG D 5 O4' - C1' - N9 ANGL. DEV. = -4.5 DEGREES REMARK 500 1 DG D 5 N3 - C2 - N2 ANGL. DEV. = -4.4 DEGREES REMARK 500 1 DG D 5 N1 - C6 - O6 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 DG D 5 C5 - C6 - O6 ANGL. DEV. = -4.7 DEGREES REMARK 500 1 DA D 6 O4' - C4' - C3' ANGL. DEV. = -5.4 DEGREES REMARK 500 1 DA D 6 C1' - O4' - C4' ANGL. DEV. = -13.8 DEGREES REMARK 500 2 DG A 1 O4' - C4' - C3' ANGL. DEV. = -5.1 DEGREES REMARK 500 2 DG A 1 C1' - O4' - C4' ANGL. DEV. = -9.6 DEGREES REMARK 500 2 DG A 1 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 2 DG A 2 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 2 DG A 2 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 2 DA A 3 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 2 DG A 4 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 2 DG A 4 C1' - O4' - C4' ANGL. DEV. = -7.1 DEGREES REMARK 500 2 DG A 4 N9 - C1' - C2' ANGL. DEV. = 10.8 DEGREES REMARK 500 2 DG A 4 O4' - C1' - N9 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 608 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1EEG A 1 6 PDB 1EEG 1EEG 1 6 DBREF 1EEG B 1 6 PDB 1EEG 1EEG 1 6 DBREF 1EEG C 1 6 PDB 1EEG 1EEG 1 6 DBREF 1EEG D 1 6 PDB 1EEG 1EEG 1 6 SEQRES 1 A 6 DG DG DA DG DG DA SEQRES 1 B 6 DG DG DA DG DG DA SEQRES 1 C 6 DG DG DA DG DG DA SEQRES 1 D 6 DG DG DA DG DG DA CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 178 0 0 0 0 0 0 6 0 0 0 4 END