HEADER DEFENSIN 12-JUL-00 1E4R TITLE SOLUTION STRUCTURE OF THE MOUSE DEFENSIN MBD-8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-DEFENSIN 8; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MBD-8,DEFENSIN,BETA 8,DEFENSIN-RELATED PEPTIDE,DEFR1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 4 ORGANISM_COMMON: MOUSE; SOURCE 5 ORGANISM_TAXID: 10090 KEYWDS DEFENSIN, MOUSE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.BAUER,K.SCHWEIMER,E.KLUVER,K.ADERMANN,W.G.FORSSMANN,P.ROESCH, AUTHOR 2 H.STICHT REVDAT 5 20-JUN-18 1E4R 1 COMPND SOURCE JRNL DBREF REVDAT 4 24-FEB-09 1E4R 1 VERSN REVDAT 3 26-NOV-01 1E4R 1 REVDAT JRNL REVDAT 2 23-AUG-01 1E4R 1 TITLE COMPND REMARK DBREF REVDAT 1 12-JUL-01 1E4R 0 JRNL AUTH F.BAUER,K.SCHWEIMER,E.KLUVER,J.R.CONEJO-GARCIA, JRNL AUTH 2 W.G.FORSSMANN,P.ROSCH,K.ADERMANN,H.STICHT JRNL TITL STRUCTURE DETERMINATION OF HUMAN AND MURINE BETA-DEFENSINS JRNL TITL 2 REVEALS STRUCTURAL CONSERVATION IN THE ABSENCE OF JRNL TITL 3 SIGNIFICANT SEQUENCE SIMILARITY. JRNL REF PROTEIN SCI. V. 10 2470 2001 JRNL REFN ISSN 0961-8368 JRNL PMID 11714914 JRNL DOI 10.1110/PS.24401 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 1E4R COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-00. REMARK 100 THE DEPOSITION ID IS D_1290005055. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : COSY; TOCSY; NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 400 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NDEE, X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY, LEAST RESTRAINT REMARK 210 VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 4 173.67 56.00 REMARK 500 2 VAL A 4 173.49 51.69 REMARK 500 6 VAL A 4 -161.55 38.50 REMARK 500 6 ILE A 7 -28.16 -175.06 REMARK 500 7 PRO A 3 -155.26 -76.24 REMARK 500 10 PRO A 3 -155.18 -73.55 REMARK 500 14 PRO A 3 -154.71 -78.64 REMARK 500 17 PRO A 3 -156.41 -78.16 REMARK 500 17 HIS A 22 37.01 -99.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 8 0.10 SIDE CHAIN REMARK 500 1 ARG A 16 0.30 SIDE CHAIN REMARK 500 1 ARG A 21 0.20 SIDE CHAIN REMARK 500 2 ARG A 8 0.30 SIDE CHAIN REMARK 500 2 ARG A 16 0.27 SIDE CHAIN REMARK 500 2 ARG A 21 0.14 SIDE CHAIN REMARK 500 3 ARG A 8 0.15 SIDE CHAIN REMARK 500 3 ARG A 16 0.19 SIDE CHAIN REMARK 500 3 ARG A 21 0.31 SIDE CHAIN REMARK 500 4 ARG A 8 0.11 SIDE CHAIN REMARK 500 4 ARG A 16 0.20 SIDE CHAIN REMARK 500 4 ARG A 21 0.25 SIDE CHAIN REMARK 500 5 ARG A 8 0.26 SIDE CHAIN REMARK 500 5 ARG A 16 0.32 SIDE CHAIN REMARK 500 5 ARG A 21 0.27 SIDE CHAIN REMARK 500 6 ARG A 8 0.21 SIDE CHAIN REMARK 500 6 ARG A 16 0.17 SIDE CHAIN REMARK 500 6 ARG A 21 0.27 SIDE CHAIN REMARK 500 7 ARG A 8 0.11 SIDE CHAIN REMARK 500 7 ARG A 16 0.30 SIDE CHAIN REMARK 500 7 ARG A 21 0.22 SIDE CHAIN REMARK 500 8 ARG A 8 0.29 SIDE CHAIN REMARK 500 8 ARG A 16 0.27 SIDE CHAIN REMARK 500 8 ARG A 21 0.20 SIDE CHAIN REMARK 500 9 ARG A 8 0.09 SIDE CHAIN REMARK 500 9 ARG A 16 0.16 SIDE CHAIN REMARK 500 9 ARG A 21 0.27 SIDE CHAIN REMARK 500 10 ARG A 8 0.31 SIDE CHAIN REMARK 500 10 ARG A 16 0.32 SIDE CHAIN REMARK 500 10 ARG A 21 0.30 SIDE CHAIN REMARK 500 11 ARG A 8 0.28 SIDE CHAIN REMARK 500 11 ARG A 16 0.32 SIDE CHAIN REMARK 500 11 ARG A 21 0.32 SIDE CHAIN REMARK 500 12 ARG A 8 0.31 SIDE CHAIN REMARK 500 12 ARG A 16 0.26 SIDE CHAIN REMARK 500 12 ARG A 21 0.32 SIDE CHAIN REMARK 500 13 ARG A 8 0.31 SIDE CHAIN REMARK 500 13 ARG A 16 0.29 SIDE CHAIN REMARK 500 13 ARG A 21 0.25 SIDE CHAIN REMARK 500 14 ARG A 8 0.32 SIDE CHAIN REMARK 500 14 ARG A 21 0.16 SIDE CHAIN REMARK 500 15 ARG A 8 0.28 SIDE CHAIN REMARK 500 15 ARG A 16 0.26 SIDE CHAIN REMARK 500 15 ARG A 21 0.32 SIDE CHAIN REMARK 500 16 ARG A 8 0.13 SIDE CHAIN REMARK 500 16 ARG A 16 0.11 SIDE CHAIN REMARK 500 16 ARG A 21 0.31 SIDE CHAIN REMARK 500 17 ARG A 8 0.23 SIDE CHAIN REMARK 500 17 ARG A 16 0.17 SIDE CHAIN REMARK 500 17 ARG A 21 0.31 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 57 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1E4R A 1 35 UNP Q91V82 DEFB8_MOUSE 26 60 SEQRES 1 A 35 ASN GLU PRO VAL SER CYS ILE ARG ASN GLY GLY ILE CYS SEQRES 2 A 35 GLN TYR ARG CYS ILE GLY LEU ARG HIS LYS ILE GLY THR SEQRES 3 A 35 CYS GLY SER PRO PHE LYS CYS CYS LYS HELIX 1 1 SER A 5 GLY A 10 5 6 SHEET 1 A 2 ILE A 12 GLN A 14 0 SHEET 2 A 2 LYS A 32 CYS A 34 -1 N CYS A 34 O ILE A 12 SHEET 3 A 2 HIS A 22 THR A 26 -1 N GLY A 25 O CYS A 33 SSBOND 1 CYS A 6 CYS A 33 1555 1555 2.02 SSBOND 2 CYS A 13 CYS A 27 1555 1555 2.02 SSBOND 3 CYS A 17 CYS A 34 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 167 0 0 1 3 0 0 6 0 0 0 3 END