HEADER VIRAL PEPTIDE 23-OCT-97 1DSK TITLE NMR SOLUTION STRUCTURE OF VPR59_86, 20 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: VPR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 59 - 86; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676 KEYWDS VIRAL PEPTIDE, POLYPEPTIDE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.YAO,A.M.TORRES,A.A.AZAD,I.G.MACREADIE,R.S.NORTON REVDAT 3 20-DEC-17 1DSK 1 JRNL REMARK REVDAT 2 24-FEB-09 1DSK 1 VERSN REVDAT 1 01-JUL-98 1DSK 0 JRNL AUTH S.YAO,A.M.TORRES,A.A.AZAD,I.G.MACREADIE,R.S.NORTON JRNL TITL SOLUTION STRUCTURE OF PEPTIDES FROM HIV-1 VPR PROTEIN THAT JRNL TITL 2 CAUSE MEMBRANE PERMEABILIZATION AND GROWTH ARREST. JRNL REF J. PEPT. SCI. V. 4 426 1998 JRNL REFN ISSN 1075-2617 JRNL PMID 9851370 JRNL DOI 10.1002/(SICI)1099-1387(199811)4:7<426::AID-PSC161>3.0 JRNL DOI 2 .CO;2-J REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.WANG,S.MUKHERJEE,O.NARAYAN,L.J.ZHAO REMARK 1 TITL CHARACTERIZATION OF A LEUCINE-ZIPPER-LIKE DOMAIN IN VPR REMARK 1 TITL 2 PROTEIN OF HUMAN IMMUNODEFICIENCY VIRUS TYPE 1. REMARK 1 REF GENE V. 178 7 1996 REMARK 1 REFN ISSN 0378-1119 REMARK 1 PMID 8921884 REMARK 1 REFERENCE 2 REMARK 1 AUTH I.G.MACREADIE,L.A.CASTELLI,D.R.HEWISH,A.KIRKPATRICK, REMARK 1 AUTH 2 A.C.WARD,A.A.AZAD REMARK 1 TITL A DOMAIN OF HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 VPR REMARK 1 TITL 2 CONTAINING REPEATED H(S/F)RIG AMINO ACID MOTIFS CAUSES CELL REMARK 1 TITL 3 GROWTH ARREST AND STRUCTURAL DEFECTS. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 92 2770 1995 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 7708721 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DSK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172924. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 HIS A 71 NE2 HIS A 71 CD2 -0.068 REMARK 500 1 HIS A 78 NE2 HIS A 78 CD2 -0.068 REMARK 500 2 HIS A 71 NE2 HIS A 71 CD2 -0.069 REMARK 500 2 HIS A 78 NE2 HIS A 78 CD2 -0.067 REMARK 500 3 HIS A 71 NE2 HIS A 71 CD2 -0.069 REMARK 500 3 HIS A 78 NE2 HIS A 78 CD2 -0.069 REMARK 500 4 HIS A 71 NE2 HIS A 71 CD2 -0.068 REMARK 500 4 HIS A 78 NE2 HIS A 78 CD2 -0.070 REMARK 500 5 HIS A 71 NE2 HIS A 71 CD2 -0.067 REMARK 500 5 HIS A 78 NE2 HIS A 78 CD2 -0.067 REMARK 500 6 HIS A 71 NE2 HIS A 71 CD2 -0.068 REMARK 500 6 HIS A 78 NE2 HIS A 78 CD2 -0.070 REMARK 500 7 HIS A 71 NE2 HIS A 71 CD2 -0.068 REMARK 500 7 HIS A 78 NE2 HIS A 78 CD2 -0.069 REMARK 500 8 HIS A 71 NE2 HIS A 71 CD2 -0.068 REMARK 500 8 HIS A 78 NE2 HIS A 78 CD2 -0.069 REMARK 500 9 HIS A 71 NE2 HIS A 71 CD2 -0.068 REMARK 500 9 HIS A 78 NE2 HIS A 78 CD2 -0.068 REMARK 500 10 HIS A 71 NE2 HIS A 71 CD2 -0.068 REMARK 500 10 HIS A 78 NE2 HIS A 78 CD2 -0.069 REMARK 500 11 HIS A 71 NE2 HIS A 71 CD2 -0.068 REMARK 500 11 HIS A 78 NE2 HIS A 78 CD2 -0.068 REMARK 500 12 HIS A 71 NE2 HIS A 71 CD2 -0.068 REMARK 500 12 HIS A 78 NE2 HIS A 78 CD2 -0.068 REMARK 500 13 HIS A 71 NE2 HIS A 71 CD2 -0.068 REMARK 500 13 HIS A 78 NE2 HIS A 78 CD2 -0.070 REMARK 500 14 HIS A 71 NE2 HIS A 71 CD2 -0.068 REMARK 500 14 HIS A 78 NE2 HIS A 78 CD2 -0.068 REMARK 500 15 HIS A 71 NE2 HIS A 71 CD2 -0.067 REMARK 500 15 HIS A 78 NE2 HIS A 78 CD2 -0.068 REMARK 500 16 HIS A 71 NE2 HIS A 71 CD2 -0.067 REMARK 500 16 HIS A 78 NE2 HIS A 78 CD2 -0.069 REMARK 500 17 HIS A 71 NE2 HIS A 71 CD2 -0.068 REMARK 500 17 HIS A 78 NE2 HIS A 78 CD2 -0.068 REMARK 500 18 HIS A 71 NE2 HIS A 71 CD2 -0.069 REMARK 500 18 HIS A 78 NE2 HIS A 78 CD2 -0.067 REMARK 500 19 HIS A 71 NE2 HIS A 71 CD2 -0.067 REMARK 500 19 HIS A 78 NE2 HIS A 78 CD2 -0.068 REMARK 500 20 HIS A 71 NE2 HIS A 71 CD2 -0.068 REMARK 500 20 HIS A 78 NE2 HIS A 78 CD2 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 62 -47.05 -131.40 REMARK 500 1 CYS A 76 -5.79 -55.47 REMARK 500 1 SER A 79 35.28 -163.34 REMARK 500 1 ARG A 80 60.46 34.53 REMARK 500 1 THR A 84 -30.05 141.07 REMARK 500 1 ARG A 85 86.69 -59.73 REMARK 500 2 ILE A 61 13.95 -64.68 REMARK 500 2 ARG A 62 -37.63 -135.30 REMARK 500 2 HIS A 78 -39.79 -31.44 REMARK 500 2 SER A 79 28.86 -146.76 REMARK 500 2 ARG A 80 70.12 43.41 REMARK 500 3 ILE A 61 27.06 -75.76 REMARK 500 3 ARG A 62 -49.96 -144.42 REMARK 500 3 CYS A 76 9.47 -59.55 REMARK 500 3 SER A 79 40.31 -171.75 REMARK 500 3 VAL A 83 -51.67 -20.94 REMARK 500 3 THR A 84 -46.78 -132.38 REMARK 500 4 ILE A 61 6.28 -64.36 REMARK 500 4 ARG A 62 -45.24 -132.95 REMARK 500 4 CYS A 76 7.54 -68.23 REMARK 500 4 SER A 79 31.59 -148.11 REMARK 500 4 ARG A 80 59.08 33.94 REMARK 500 4 ARG A 85 74.71 12.51 REMARK 500 5 ARG A 62 -47.05 -130.24 REMARK 500 5 SER A 79 28.32 -164.02 REMARK 500 5 THR A 84 -4.25 -141.56 REMARK 500 5 ARG A 85 50.35 28.48 REMARK 500 6 ILE A 61 14.95 -67.41 REMARK 500 6 ARG A 62 -44.62 -135.98 REMARK 500 6 SER A 79 29.11 -159.13 REMARK 500 6 ARG A 80 12.78 49.82 REMARK 500 7 ILE A 61 26.33 -75.55 REMARK 500 7 ARG A 62 -51.15 -143.65 REMARK 500 7 CYS A 76 3.13 -69.69 REMARK 500 7 SER A 79 54.57 169.89 REMARK 500 7 ARG A 80 36.94 34.10 REMARK 500 7 THR A 84 -63.66 152.77 REMARK 500 8 ILE A 61 15.01 -66.65 REMARK 500 8 ARG A 62 -40.61 -133.37 REMARK 500 8 CYS A 76 0.94 -60.49 REMARK 500 8 SER A 79 27.20 -147.74 REMARK 500 8 ARG A 80 58.48 33.29 REMARK 500 8 ILE A 81 -1.74 -54.42 REMARK 500 8 VAL A 83 -29.34 -34.95 REMARK 500 8 THR A 84 -51.36 -176.13 REMARK 500 9 ARG A 62 -41.06 -139.80 REMARK 500 9 CYS A 76 1.03 -62.41 REMARK 500 9 SER A 79 53.31 175.70 REMARK 500 9 ARG A 80 40.53 34.55 REMARK 500 9 ILE A 81 41.47 38.42 REMARK 500 REMARK 500 THIS ENTRY HAS 101 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 62 0.29 SIDE CHAIN REMARK 500 1 ARG A 73 0.32 SIDE CHAIN REMARK 500 1 ARG A 77 0.31 SIDE CHAIN REMARK 500 1 ARG A 80 0.30 SIDE CHAIN REMARK 500 1 ARG A 85 0.29 SIDE CHAIN REMARK 500 2 ARG A 62 0.29 SIDE CHAIN REMARK 500 2 ARG A 73 0.26 SIDE CHAIN REMARK 500 2 ARG A 77 0.31 SIDE CHAIN REMARK 500 2 ARG A 80 0.26 SIDE CHAIN REMARK 500 2 ARG A 85 0.28 SIDE CHAIN REMARK 500 3 ARG A 62 0.32 SIDE CHAIN REMARK 500 3 ARG A 73 0.28 SIDE CHAIN REMARK 500 3 ARG A 77 0.31 SIDE CHAIN REMARK 500 3 ARG A 80 0.27 SIDE CHAIN REMARK 500 3 ARG A 85 0.31 SIDE CHAIN REMARK 500 4 ARG A 62 0.31 SIDE CHAIN REMARK 500 4 ARG A 73 0.32 SIDE CHAIN REMARK 500 4 ARG A 77 0.30 SIDE CHAIN REMARK 500 4 ARG A 80 0.22 SIDE CHAIN REMARK 500 4 ARG A 85 0.15 SIDE CHAIN REMARK 500 5 ARG A 62 0.30 SIDE CHAIN REMARK 500 5 ARG A 73 0.15 SIDE CHAIN REMARK 500 5 ARG A 77 0.30 SIDE CHAIN REMARK 500 5 ARG A 80 0.27 SIDE CHAIN REMARK 500 5 ARG A 85 0.30 SIDE CHAIN REMARK 500 6 ARG A 62 0.30 SIDE CHAIN REMARK 500 6 ARG A 73 0.30 SIDE CHAIN REMARK 500 6 ARG A 77 0.24 SIDE CHAIN REMARK 500 6 ARG A 80 0.32 SIDE CHAIN REMARK 500 6 ARG A 85 0.32 SIDE CHAIN REMARK 500 7 ARG A 62 0.29 SIDE CHAIN REMARK 500 7 ARG A 73 0.22 SIDE CHAIN REMARK 500 7 ARG A 77 0.31 SIDE CHAIN REMARK 500 7 ARG A 80 0.31 SIDE CHAIN REMARK 500 7 ARG A 85 0.32 SIDE CHAIN REMARK 500 8 ARG A 62 0.19 SIDE CHAIN REMARK 500 8 ARG A 73 0.32 SIDE CHAIN REMARK 500 8 ARG A 77 0.24 SIDE CHAIN REMARK 500 8 ARG A 80 0.30 SIDE CHAIN REMARK 500 8 ARG A 85 0.29 SIDE CHAIN REMARK 500 9 ARG A 62 0.22 SIDE CHAIN REMARK 500 9 ARG A 73 0.26 SIDE CHAIN REMARK 500 9 ARG A 77 0.31 SIDE CHAIN REMARK 500 9 ARG A 80 0.29 SIDE CHAIN REMARK 500 9 ARG A 85 0.32 SIDE CHAIN REMARK 500 10 ARG A 62 0.22 SIDE CHAIN REMARK 500 10 ARG A 73 0.31 SIDE CHAIN REMARK 500 10 ARG A 77 0.25 SIDE CHAIN REMARK 500 10 ARG A 80 0.32 SIDE CHAIN REMARK 500 10 ARG A 85 0.32 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 100 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1DSK A 59 86 UNP P12520 VPR_HV1N5 59 86 SEQRES 1 A 28 ALA ILE ILE ARG ILE LEU GLN GLN LEU LEU PHE ILE HIS SEQRES 2 A 28 PHE ARG ILE GLY CYS ARG HIS SER ARG ILE GLY VAL THR SEQRES 3 A 28 ARG GLN HELIX 1 1 ILE A 60 ARG A 77 1SEE REMARK 650 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 275 0 0 1 0 0 0 6 0 0 0 3 END