HEADER IMMUNE SYSTEM 27-OCT-99 1D9C TITLE BOVINE INTERFERON-GAMMA AT 2.0 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON-GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HELICAL HOMODIMER, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.RANDAL,A.A.KOSSIAKOFF REVDAT 5 04-OCT-17 1D9C 1 REMARK REVDAT 4 24-FEB-09 1D9C 1 VERSN REVDAT 3 01-APR-03 1D9C 1 JRNL REVDAT 2 19-JAN-00 1D9C 1 JRNL REMARK REVDAT 1 10-NOV-99 1D9C 0 JRNL AUTH M.RANDAL,A.A.KOSSIAKOFF JRNL TITL THE 2.0 A STRUCTURE OF BOVINE INTERFERON-GAMMA; ASSESSMENT JRNL TITL 2 OF THE STRUCTURAL DIFFERENCES BETWEEN SPECIES. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 56 14 2000 JRNL REFN ISSN 0907-4449 JRNL PMID 10666622 JRNL DOI 10.1107/S0907444999014304 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 16093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1612 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1863 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 183 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1993 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : -0.88000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.28 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.360 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.510 ; 3.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.030 ; 7.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.430 ; 5.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 9.490 ; 14.000 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NCS RESTRAINTS WERE APPLIED TO REMARK 3 INDIVIDUAL HELICES, BULK SOLVENT MODEL USED REMARK 4 REMARK 4 1D9C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-99. REMARK 100 THE DEPOSITION ID IS D_1000009906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, AUTOMAR REMARK 200 DATA SCALING SOFTWARE : MARSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71885 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 27.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 72.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, SODIUM CHLORIDE, SODIUM CITRATE , REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.07500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.93000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.54000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.93000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.07500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.54000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS REMARK 300 THE BIOLOGICALLY RELEVANT REMARK 300 HOMODIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 201 REMARK 465 GLY B 202 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 16 49.81 72.74 REMARK 500 LEU A 28 -62.37 -101.47 REMARK 500 LYS B 261 -5.19 -52.90 REMARK 500 ASN B 283 29.65 48.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HIG RELATED DB: PDB REMARK 900 HUMAN INTERFERON-GAMMA AT 3.5A RESOLUTION REMARK 900 RELATED ID: 1RFB RELATED DB: PDB REMARK 900 BOVINE INTERFERON-GAMMA AT 3A RESOLUTION REMARK 900 RELATED ID: 2RIG RELATED DB: PDB REMARK 900 RABBIT INTERFERON-GAMMA AT 2.3A RESOLUTION REMARK 900 RELATED ID: 1D9G RELATED DB: PDB REMARK 900 BOVINE INTERFERON-GAMMA AT 2.90A RESOLUTION DBREF 1D9C A 1 121 UNP P07353 IFNG_BOVIN 24 144 DBREF 1D9C B 201 321 UNP P07353 IFNG_BOVIN 24 144 SEQRES 1 A 121 GLN GLY GLN PHE PHE ARG GLU ILE GLU ASN LEU LYS GLU SEQRES 2 A 121 TYR PHE ASN ALA SER SER PRO ASP VAL ALA LYS GLY GLY SEQRES 3 A 121 PRO LEU PHE SER GLU ILE LEU LYS ASN TRP LYS ASP GLU SEQRES 4 A 121 SER ASP LYS LYS ILE ILE GLN SER GLN ILE VAL SER PHE SEQRES 5 A 121 TYR PHE LYS LEU PHE GLU ASN LEU LYS ASP ASN GLN VAL SEQRES 6 A 121 ILE GLN ARG SER MET ASP ILE ILE LYS GLN ASP MET PHE SEQRES 7 A 121 GLN LYS PHE LEU ASN GLY SER SER GLU LYS LEU GLU ASP SEQRES 8 A 121 PHE LYS LYS LEU ILE GLN ILE PRO VAL ASP ASP LEU GLN SEQRES 9 A 121 ILE GLN ARG LYS ALA ILE ASN GLU LEU ILE LYS VAL MET SEQRES 10 A 121 ASN ASP LEU SER SEQRES 1 B 121 GLN GLY GLN PHE PHE ARG GLU ILE GLU ASN LEU LYS GLU SEQRES 2 B 121 TYR PHE ASN ALA SER SER PRO ASP VAL ALA LYS GLY GLY SEQRES 3 B 121 PRO LEU PHE SER GLU ILE LEU LYS ASN TRP LYS ASP GLU SEQRES 4 B 121 SER ASP LYS LYS ILE ILE GLN SER GLN ILE VAL SER PHE SEQRES 5 B 121 TYR PHE LYS LEU PHE GLU ASN LEU LYS ASP ASN GLN VAL SEQRES 6 B 121 ILE GLN ARG SER MET ASP ILE ILE LYS GLN ASP MET PHE SEQRES 7 B 121 GLN LYS PHE LEU ASN GLY SER SER GLU LYS LEU GLU ASP SEQRES 8 B 121 PHE LYS LYS LEU ILE GLN ILE PRO VAL ASP ASP LEU GLN SEQRES 9 B 121 ILE GLN ARG LYS ALA ILE ASN GLU LEU ILE LYS VAL MET SEQRES 10 B 121 ASN ASP LEU SER FORMUL 3 HOH *130(H2 O) HELIX 1 1 GLN A 1 ASN A 16 1 16 HELIX 2 2 PHE A 29 TRP A 36 1 8 HELIX 3 3 LYS A 42 ASN A 59 1 18 HELIX 4 4 ILE A 66 LEU A 82 1 17 HELIX 5 5 SER A 85 GLN A 97 1 13 HELIX 6 6 ASP A 102 GLU A 112 1 11 HELIX 7 7 GLU A 112 SER A 121 1 10 HELIX 8 8 GLN B 203 ASN B 216 1 14 HELIX 9 9 SER B 219 LYS B 224 5 6 HELIX 10 10 PHE B 229 TRP B 236 1 8 HELIX 11 11 LYS B 242 LEU B 260 1 19 HELIX 12 12 ILE B 266 LEU B 282 1 17 HELIX 13 13 SER B 285 GLN B 297 1 13 HELIX 14 14 ASP B 302 GLU B 312 1 11 HELIX 15 15 GLU B 312 LEU B 320 1 9 CRYST1 36.150 81.080 83.860 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027660 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012330 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011920 0.00000 MASTER 248 0 0 15 0 0 0 6 0 0 0 20 END