HEADER GENE REGULATION 25-OCT-99 1D8J TITLE SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL TRANSCRIPTION FACTOR TFIIE-BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CENTRAL CORE DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS WINGED HELIX-TURN-HELIX, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, KEYWDS 3 GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.OKUDA,Y.WATANABE,H.OKAMURA,F.HANAOKA,Y.OHKUMA,Y.NISHIMURA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 1D8J 1 VERSN REVDAT 1 26-APR-00 1D8J 0 JRNL AUTH M.OKUDA,Y.WATANABE,H.OKAMURA,F.HANAOKA,Y.OHKUMA, JRNL AUTH 2 Y.NISHIMURA JRNL TITL STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIEBETA JRNL TITL 2 WITH A NOVEL DOUBLE-STRANDED DNA-BINDING SURFACE. JRNL REF EMBO J. V. 19 1346 2000 JRNL REFN ISSN 0261-4189 JRNL PMID 10716934 JRNL DOI 10.1093/EMBOJ/19.6.1346 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : EMBOSS 5 REMARK 3 AUTHORS : NAKAI, KIDERA, NAKAMURA REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 1224 RESTRAINTS, 1184 ARE NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 38 DIHEDRAL ANGLE RESTRAINTS, 40 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS. REMARK 4 REMARK 4 1D8J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-99. REMARK 100 THE RCSB ID CODE IS RCSB009887. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 500MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-2MM PROTEIN U-15N,13C; 20MM REMARK 210 PHOSPHATE BUFFER, 500MM NACL; REMARK 210 1-2MM PROTEIN ; 20MM PHOSPHATE REMARK 210 BUFFER, 500MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 3D_13C-SEPARATED_ REMARK 210 NOESY, 3D_15N-SEPARATED_NOESY, REMARK 210 4D_13C-SEPARATED_NOESY, HNHA, REMARK 210 HMQC-J REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX, AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.6, PIPP, CAPP, REMARK 210 STAPP 3.9, EMBOSS 5 REMARK 210 METHOD USED : 4D SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 20 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 9 -59.90 74.93 REMARK 500 1 ILE A 46 -105.72 26.28 REMARK 500 1 GLU A 57 -67.39 -165.45 REMARK 500 1 LEU A 59 27.93 -79.71 REMARK 500 1 VAL A 60 -38.80 -134.88 REMARK 500 1 ILE A 68 -98.66 -115.96 REMARK 500 1 TYR A 78 49.22 36.15 REMARK 500 1 ASN A 79 -49.69 -164.60 REMARK 500 2 LEU A 2 -64.79 -155.68 REMARK 500 2 SER A 5 -173.10 61.26 REMARK 500 2 LYS A 9 -47.36 82.62 REMARK 500 2 ASP A 28 46.38 -82.06 REMARK 500 2 GLN A 42 72.71 -26.47 REMARK 500 2 HIS A 43 58.12 -178.58 REMARK 500 2 ASP A 45 -45.06 -162.21 REMARK 500 2 ILE A 46 -89.57 40.88 REMARK 500 2 GLU A 57 -54.21 -138.84 REMARK 500 2 LYS A 77 -72.25 71.60 REMARK 500 2 TYR A 78 46.28 -146.02 REMARK 500 3 LYS A 9 -47.87 -166.34 REMARK 500 3 ARG A 26 -51.71 -163.87 REMARK 500 3 LEU A 44 -52.59 166.26 REMARK 500 3 GLU A 57 -68.89 -160.32 REMARK 500 3 ASN A 61 58.35 -101.78 REMARK 500 3 ILE A 68 -96.65 -131.79 REMARK 500 3 LYS A 77 -103.56 55.73 REMARK 500 3 ASN A 79 173.76 73.99 REMARK 500 4 SER A 3 -36.58 -153.82 REMARK 500 4 SER A 6 34.23 -83.79 REMARK 500 4 TYR A 8 -126.81 51.95 REMARK 500 4 ASP A 28 53.96 -140.46 REMARK 500 4 ASP A 45 -40.65 -163.54 REMARK 500 4 ILE A 46 -88.30 18.18 REMARK 500 4 GLU A 57 -66.86 -162.29 REMARK 500 4 VAL A 60 -41.78 -133.22 REMARK 500 5 LEU A 2 -81.73 62.08 REMARK 500 5 SER A 5 81.04 56.92 REMARK 500 5 LYS A 9 -67.88 69.56 REMARK 500 5 GLU A 57 -74.43 -138.77 REMARK 500 5 ASN A 61 -15.78 -145.81 REMARK 500 5 ILE A 68 -108.09 -116.94 REMARK 500 5 PRO A 76 -81.86 -73.65 REMARK 500 5 LYS A 77 41.10 -161.42 REMARK 500 5 ASN A 79 105.39 -167.52 REMARK 500 6 LYS A 9 -47.68 175.27 REMARK 500 6 ARG A 26 -47.09 -136.81 REMARK 500 6 ILE A 46 -102.46 22.47 REMARK 500 6 GLU A 57 -55.16 -167.58 REMARK 500 6 LYS A 77 -44.47 -164.35 REMARK 500 6 TYR A 78 -64.24 -147.08 REMARK 500 6 ASN A 79 80.39 57.61 REMARK 500 7 LEU A 2 -155.46 61.56 REMARK 500 7 LYS A 9 -64.89 75.42 REMARK 500 7 GLN A 42 -11.95 68.83 REMARK 500 7 HIS A 43 35.51 -77.35 REMARK 500 7 ASP A 45 37.82 -86.30 REMARK 500 7 GLU A 57 -49.89 -160.93 REMARK 500 7 ALA A 58 -76.82 -81.93 REMARK 500 7 ASN A 61 26.57 -147.50 REMARK 500 7 ILE A 68 -112.78 -127.71 REMARK 500 7 ASN A 79 47.35 -154.98 REMARK 500 8 LEU A 2 29.66 -150.35 REMARK 500 8 SER A 3 52.29 -161.33 REMARK 500 8 LYS A 9 -61.80 74.20 REMARK 500 8 ARG A 26 -59.29 -165.53 REMARK 500 8 GLN A 42 86.41 -32.60 REMARK 500 8 HIS A 43 29.27 -140.60 REMARK 500 8 GLU A 57 -67.29 -166.95 REMARK 500 8 LEU A 59 37.45 -80.27 REMARK 500 8 ASP A 69 77.60 -160.32 REMARK 500 8 TYR A 78 -109.65 57.52 REMARK 500 8 ASN A 79 163.48 64.95 REMARK 500 9 SER A 5 135.56 71.55 REMARK 500 9 SER A 6 -55.05 -158.28 REMARK 500 9 LYS A 9 -61.58 -151.44 REMARK 500 9 GLN A 42 -88.84 73.68 REMARK 500 9 HIS A 43 -109.60 31.82 REMARK 500 9 LEU A 44 -64.71 69.36 REMARK 500 9 ILE A 46 137.78 47.51 REMARK 500 9 GLU A 57 -65.65 -170.50 REMARK 500 9 ASN A 61 -9.34 69.17 REMARK 500 9 ASP A 69 19.90 59.16 REMARK 500 9 LYS A 77 -51.95 -157.50 REMARK 500 9 TYR A 78 -52.40 -171.82 REMARK 500 10 LEU A 2 28.29 -149.92 REMARK 500 10 TYR A 8 124.31 66.25 REMARK 500 10 LYS A 9 -74.66 65.10 REMARK 500 10 GLN A 42 -10.52 69.04 REMARK 500 10 HIS A 43 39.15 -78.06 REMARK 500 10 GLU A 57 -56.19 -167.75 REMARK 500 10 ILE A 68 -95.90 -120.87 REMARK 500 10 PRO A 76 -172.50 -67.02 REMARK 500 10 TYR A 78 -49.31 -163.02 REMARK 500 11 SER A 3 60.04 -152.51 REMARK 500 11 SER A 6 54.32 -140.48 REMARK 500 11 TYR A 8 15.82 50.71 REMARK 500 11 LYS A 9 -42.75 -169.34 REMARK 500 11 GLN A 42 -61.00 75.63 REMARK 500 11 ILE A 46 -134.37 55.63 REMARK 500 11 GLU A 57 -66.77 -165.72 REMARK 500 11 LEU A 59 31.70 -81.46 REMARK 500 11 VAL A 60 -40.38 -134.41 REMARK 500 11 ILE A 68 -60.80 -104.06 REMARK 500 11 ASP A 69 76.23 -152.45 REMARK 500 11 ASN A 79 -49.26 -165.79 REMARK 500 12 SER A 3 -62.24 -153.22 REMARK 500 12 SER A 6 56.30 -150.35 REMARK 500 12 TYR A 8 -122.43 -114.38 REMARK 500 12 GLN A 42 84.40 -36.92 REMARK 500 12 HIS A 43 45.10 -140.04 REMARK 500 12 ILE A 46 -98.42 22.85 REMARK 500 12 GLU A 57 -72.68 -102.00 REMARK 500 12 LEU A 59 31.90 -80.39 REMARK 500 12 VAL A 60 -47.68 -134.47 REMARK 500 13 SER A 3 -57.44 75.01 REMARK 500 13 LYS A 9 -69.97 69.12 REMARK 500 13 ARG A 26 38.99 -95.17 REMARK 500 13 ASP A 28 41.76 -82.30 REMARK 500 13 ASP A 45 41.22 -83.90 REMARK 500 13 GLU A 57 -70.33 -168.38 REMARK 500 13 LEU A 59 28.59 -79.10 REMARK 500 13 LYS A 64 36.52 -99.00 REMARK 500 13 ASN A 79 143.78 70.22 REMARK 500 14 SER A 3 35.91 -153.05 REMARK 500 14 LYS A 9 -65.82 74.19 REMARK 500 14 GLN A 42 -111.27 67.54 REMARK 500 14 HIS A 43 -116.30 46.71 REMARK 500 14 LEU A 44 -55.40 78.44 REMARK 500 14 ILE A 46 -74.11 66.39 REMARK 500 14 GLU A 57 -67.91 -152.46 REMARK 500 14 LYS A 77 52.21 -160.68 REMARK 500 14 VAL A 80 135.72 69.49 REMARK 500 15 SER A 3 76.78 -153.16 REMARK 500 15 LYS A 9 -47.40 -154.90 REMARK 500 15 GLN A 25 43.37 -82.41 REMARK 500 15 ARG A 26 -51.43 -158.60 REMARK 500 15 GLU A 57 -61.88 -172.77 REMARK 500 15 ILE A 68 -114.07 -115.80 REMARK 500 15 LYS A 77 128.26 70.76 REMARK 500 16 SER A 3 75.26 -162.43 REMARK 500 16 SER A 5 -168.76 64.17 REMARK 500 16 TYR A 8 38.01 -153.31 REMARK 500 16 LYS A 9 -51.04 -173.50 REMARK 500 16 ARG A 26 -50.13 -154.45 REMARK 500 16 TYR A 78 -61.13 -156.27 REMARK 500 16 ASN A 79 -67.68 70.25 REMARK 500 17 SER A 6 -128.78 -83.52 REMARK 500 17 TYR A 8 142.00 69.02 REMARK 500 17 LYS A 9 -45.69 74.47 REMARK 500 17 ASP A 45 38.72 -87.22 REMARK 500 17 GLU A 57 -70.77 -166.79 REMARK 500 17 ALA A 58 -80.09 -57.45 REMARK 500 17 ASN A 61 54.57 -145.66 REMARK 500 18 LYS A 9 -67.20 72.99 REMARK 500 18 GLN A 25 48.74 -83.82 REMARK 500 18 ARG A 26 -50.14 -162.79 REMARK 500 18 GLN A 42 -15.37 72.45 REMARK 500 18 HIS A 43 42.73 -78.18 REMARK 500 18 ILE A 46 -132.07 34.74 REMARK 500 18 GLU A 57 -49.09 -132.90 REMARK 500 18 VAL A 60 -93.46 -73.83 REMARK 500 18 ASN A 79 -155.31 61.42 REMARK 500 19 LEU A 2 -68.06 73.32 REMARK 500 19 SER A 5 52.14 -163.99 REMARK 500 19 TYR A 8 145.13 66.48 REMARK 500 19 LYS A 9 -48.71 77.68 REMARK 500 19 ASP A 45 42.53 -84.59 REMARK 500 19 GLU A 57 -66.11 -165.75 REMARK 500 19 ASN A 61 66.02 -102.26 REMARK 500 19 ILE A 68 -120.97 -112.59 REMARK 500 19 LYS A 77 -80.35 -166.36 REMARK 500 20 SER A 5 -131.95 46.15 REMARK 500 20 LYS A 9 -65.18 72.51 REMARK 500 20 GLN A 42 -58.51 74.44 REMARK 500 20 HIS A 43 77.75 -69.76 REMARK 500 20 ILE A 46 -70.48 50.26 REMARK 500 20 GLU A 57 -75.17 -168.17 REMARK 500 20 ILE A 68 -125.15 -126.52 REMARK 500 20 LYS A 77 -173.41 71.22 REMARK 500 20 TYR A 78 32.73 -164.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 ARG A 23 0.08 SIDE_CHAIN REMARK 500 8 ARG A 23 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1D8K RELATED DB: PDB REMARK 900 RELATED ID: TRT001000205.1 RELATED DB: TARGETDB DBREF 1D8J A 1 81 UNP P29084 T2EB_HUMAN 66 146 SEQRES 1 A 81 ALA LEU SER GLY SER SER GLY TYR LYS PHE GLY VAL LEU SEQRES 2 A 81 ALA LYS ILE VAL ASN TYR MET LYS THR ARG HIS GLN ARG SEQRES 3 A 81 GLY ASP THR HIS PRO LEU THR LEU ASP GLU ILE LEU ASP SEQRES 4 A 81 GLU THR GLN HIS LEU ASP ILE GLY LEU LYS GLN LYS GLN SEQRES 5 A 81 TRP LEU MET THR GLU ALA LEU VAL ASN ASN PRO LYS ILE SEQRES 6 A 81 GLU VAL ILE ASP GLY LYS TYR ALA PHE LYS PRO LYS TYR SEQRES 7 A 81 ASN VAL ARG HELIX 1 1 PHE A 10 GLN A 25 1 16 HELIX 2 2 LEU A 34 GLU A 40 1 7 HELIX 3 3 LEU A 48 MET A 55 1 8 SHEET 1 A 3 LEU A 32 LEU A 32 0 SHEET 2 A 3 ILE A 65 ILE A 68 0 SHEET 3 A 3 LYS A 71 PHE A 74 0 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 275 0 0 3 3 0 0 6 0 0 0 7 END